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R Galler

Publications and source records attributed to R Galler.

At least 37 records · Page 2Linked to original sources
PubMed1995

Complete nucleotide sequence of yellow fever virus vaccine strains 17DD and 17D-213.

The complete nucleotide sequence of the genome from two yellow fever (YF) virus vaccine strains, 17DD and 17D-213, has been determined. Comparison of these sequences with those of other YF viruses including the parental virulent Asibi strain allowed the identification of 48 nucleotide sequence differences which are common to all 17D substrains. This is a significant reduction from the 67 nucleotide changes originally reported as being 17D-specific and potentially related to viral attenuation. The 48 changes are scattered throughout the genome, 26 of which are silent and 22 led to amino acid substitutions. These 22 changes are bona fide candidates to test by mutating the infectious YF cDNA to investigate their role in viral attenuation.

Codon↗
PubMed1992

Heterogeneity in envelope protein sequence and N-linked glycosylation among yellow fever virus vaccine strains.

We have compared the deduced envelope (E) protein sequences of two biologically well-characterized yellow fever (YF) virus vaccine strains. The 17DD strain has been produced in Brazil for more than 50 years and used to successfully vaccinate millions of people worldwide. The 17D-213 is a candidate vaccine strain produced in tissue culture which has previously passed the monkey neurovirulence assay for testing human YF vaccines. Nucleotide sequence analysis of polymerase chain reaction-amplified cDNA revealed a number of mutations which were strain- and substrain-specific. A major difference of 17DD and 17D-213 as compared to 17D-204 and Asibi was the existence of a potential N-linked glycosylation site located at amino acid residues 153 and 151 of 17DD and 17D-213, respectively. These acceptor sites are apparently utilized for the addition of high-mannose carbohydrate chains as shown by endoglycosidase analyses of immunoprecipitated E proteins. Glycosylated E protein is also used to assemble YF vaccine virions. This work and eventual complete nucleotide sequence analysis of both vaccine strains should help to define possible changes involved in YF virus attenuation and allow their biological importance to be determined using a recently developed system for generating YF virus from cDNA. In addition, these data provide an estimate on the extent of genetic variability among YF 17D seeds and vaccines.

Amino Acid Sequence↗
PubMed1992

Trypanosoma cruzi flagellar repetitive antigen expression by recombinant baculovirus: towards an improved diagnostic reagent for Chagas' disease.

We constructed a recombinant baculovirus that expressed part of a Trypanosoma cruzi flagellar repetitive antigen (FRA). Both cell- associated and secreted forms of recombinant FRA were detected in cultures of virus-infected Spodoptera frugiperda (Sf9) cells. These forms show a complex pattern after polyacrylamide gel electrophoresis and Western blot analysis using either an anti-FRA rabbit serum or human Chagasic sera. Competitive Western-blot experiments revealed that all bands react with the same antibodies as a bacterially-derived FRA. Polymerase chain reaction and Southern blots of the recombinant viral DNA also showed a complex pattern, suggesting the presence of more than one repeat unit in the viral genome. When tested against a panel of human sera from an endemic area for Chagas' disease, FRA recombinant-Sf9 culture supernatant showed the same reactivity as purified FRA produced in bacteria.

Animals↗
PubMed1992

[The use of tapioca as coverage in viral titration].

Virus titration is an important step required on viral vaccines quality control. "Plaque assay", which employs several types of overlay media, is usually used on viral titrations. In this paper we describe the use of Tapioca as an overlay media. Firstly, the toxicity of Tapioca was tested on Vero cells inoculated or not with the Yellow Fever virus (YF) 17DD vaccine strain. Secondly, different batches of the 17DD virus using the Tapioca and Karaya gum as the overlay on Vero cells were tested when higher titres were obtained using Tapioca. Tapioca was also shown to be a suitable overlay to be used in thermostability and plaque reduction neutralization tests. Other systems could benefit from the use of Tapioca as an overlay, since it was possible to titer Measles virus in Vero cells. Tapioca is a cheap Brazilian product, is locally available, easy to use, and reliable. Its use is suggested.

Animals↗
PubMed1991

Molecular analysis of contagious pustular dermatitis virus: a simplified method for viral DNA extraction from scab material.

A new simplified method of DNA extraction of contagious pustular dermatitis virus directly from scab material of natural and experimental infections is described. Scabs are suspended in buffer solution and an enriched core suspension is obtained after treatment with detergent, quelants and centrifugation. DNA is isolated after proteinase digestion and phenolchloroform extraction. Viral DNA and fragments with sizes ranging from 23-25 kb were observed by agarose gel electrophoresis. This DNA was used for digestion with several restriction endonucleases which produced parapoxvirus-specific patterns. Southern blots with the TK gene of vaccinia virus as probe confirmed the virus as being poxvirus-related and allowed a preliminary TK gene location for our isolates. The method was developed in order to allow a quick epidemiological survey of contagious pustular dermatitis virus in Brazil, eliminating the need for time-consuming and expensive viral propagation in cell culture and purification.

Animals↗
PubMed1991

Glycosylation and secretion of yellow fever virus nonstructural protein NS1.

The flavivirus genome codes for structural and nonstructural proteins which are produced from a common polyprotein precursor by proteolytic processing. The nonstructural protein NS1 is hypothesized to be involved in virus assembly and maturation as well as in protective immunity. This paper describes the synthesis of several forms of yellow fever (YF) virus NS1 protein during virus cultivation in vitro. These include cell-associated and secreted NS1 forms, the major difference among these being their N-linked glycosylation status. High-mannose and complex (or hybrid)-type moieties were identified on YF NS1 by analysis with endoglycosidases of known specificity. These studies are the basis for a systematic approach to determining the role of NS1 in the virus cycle and possibly in pathogenesis.

Amino Acid Sequence↗
PubMed1990

Expression of the structural proteins of dengue 2 virus and yellow fever virus by recombinant vaccinia viruses.

Vaccinia virus recombinants were constructed which contained cDNA sequences encoding the structural region of dengue 2 virus (PR159/S1 strain) or yellow fever virus (17D strain). The flavivirus cDNA sequences were expressed under the control of the vaccinia 7.5k early/late promotor. Cultured cells infected with these recombinants expressed immunologically reactive flavivirus structural proteins, precursor prM and E. These proteins appeared to be cleaved and glycosylated properly since they comigrated with the authentic proteins from dengue 2 virus- and yellow fever virus-infected cells. Mice immunized with the dengue/vaccinia recombinant showed a dengue-specific immune response that included low levels of neutralizing antibodies. Immunization of mice with the yellow fever/vaccinia recombinant was less effective at inducing an immune response to yellow fever virus and in only some of the mice were low titers of neutralizing antibodies produced.

Amino Acid Sequence↗
PubMed1989

Transcription of infectious yellow fever RNA from full-length cDNA templates produced by in vitro ligation.

Yellow fever (YF) virus is the prototype member of the flavivirus family, a diverse group of human and animal pathogens. A live-attenuated strain of YF virus, called 17D, has been used successfully for human vaccination for more than 50 years. In this report we describe the construction of full-length YF 17D cDNA templates that can be transcribed in vitro to yield infectious YF virus RNA. Because of the instability of full-length YF cDNA clones and their toxic effects on Escherichia coli, we developed a strategy in which full-length templates for transcription were constructed by in vitro ligation of appropriate restriction fragments. The YF virus recovered from cDNA was indistinguishable from the parental virus by several criteria. This system should facilitate the molecular genetic analysis of flavivirus replication and attenuation and may allow YF 17D to be used as a carrier for immunologically important epitopes from other disease agents.

Base Sequence↗
PubMed1988

Nucleotide sequence of dengue 2 RNA and comparison of the encoded proteins with those of other flaviviruses.

We have determined the complete sequence of the RNA of dengue 2 virus (S1 candidate vaccine strain derived from the PR-159 isolate) with the exception of about 15 nucleotides at the 5' end. The genome organization is the same as that deduced earlier for other flaviviruses and the amino acid sequences of the encoded dengue 2 proteins show striking homology to those of other flaviviruses. The overall amino acid sequence similarity between dengue 2 and yellow fever virus is 44.7%, whereas that between dengue 2 and West Nile virus is 50.7%. These viruses represent three different serological subgroups of mosquito-borne flaviviruses. Comparison of the amino acid sequences shows that amino acid sequence homology is not uniformly distributed among the proteins; highest homology is found in some domains of nonstructural protein NS5 and lowest homology in the hydrophobic polypeptides ns2a and 2b. In general the structural proteins are less well conserved than the nonstructural proteins. Hydrophobicity profiles, however, are remarkably similar throughout the translated region. Comparison of the dengue 2 PR-159 sequence to partial sequence data from dengue 4 and another strain of dengue 2 virus reveals amino acid sequence homologies of about 64 and 96%, respectively, in the structural protein region. Thus as a general rule for flaviviruses examined to date, members of different serological subgroups demonstrate 50% or less amino acid sequence homology, members of the same subgroup average 65-75% homology, and strains of the same virus demonstrate greater than 95% amino acid sequence similarity.

Amino Acid Sequence↗
PubMed1985

Two genes in Balbiani ring 2 with metabolically different 75S transcripts.

Balbiani ring 2 (BR2) in salivary glands of Chironomus pallidivittatus and C. tentans (two sibling species of the subgenus Camptochironomus) is a favoured model system for studies of gene organization and transcript formation. Here we show that BR2 is more complex than hitherto believed, containing two 75S RNA-producing genes, BR2a and BR2b, present in different 35-40 kb blocks of DNA. The transcripts hybridizing to two different repeat units originating in BR2 differ in size. Further support for the presence of two genes comes from RNA studies during experimentally induced BR2 regression. The amounts of BR2a RNA per cell remain more or less constant throughout the course of the experiment, whereas the BR2b RNA decreases considerably. Under normal conditions there is 5-6 times more BR2a RNA than BR2b RNA. This ratio increases 3-fold under experimental conditions. BR2a and BR2b, although partially homologous, contain repeat units with characteristic differences. BR2a contains a repeat unit that is much more similar to a BR1 repeat than it is to the BR2b repeat. The possibility is discussed that a Balbiani ring in general represents an integrated set of active genes rather than a singe gene.

Journal Article↗
PubMed1984

Phosphate incorporation into secretory protein of Chironomus salivary glands occurs during translation.

The Balbiani rings (BR) in Chironomus salivary gland cells code for giant secretory proteins, the sp-I family. During normal growth conditions the phosphorylated proteins sp-Ia and sp-Ib are formed with most phosphate present as phosphoserine. We can show that most if not all incorporation of P into sp-I occurs in parallel with the incorporation of [S]-methionine in the giant polysomes that form sp-I and contain BR-derived mRNA. We suggest that the main function of phosphorylation of sp-Ia and sp-Ib is to provide charge neutralization of an excess of lysine and arginine residues and is therefore required during early stages of protein folding. This view is supported by the previous observation that glutamic (and aspartic) acid largely substitute for phosphoserine in a non-phosphorylated member of the sp-I family, sp-Ic, which is produced during phosphate starvation.

Journal Article↗
PubMed1984

Balbiani ring induction in phosphate metabolism.

Balbiani rings (BR), giant puffs in Chironomus larval salivary glands, code for giant secretory proteins. As shown earlier, the normally dominant BR2 is turned off with its putative translation product during exposure of larvae to compounds that diminish the stores of P(i). A BR6 develops from a compact chromosome band, and a new giant protein appears in the secretion as the major component. We have determined the sequence of cloned DNA fragments representative for large parts of BR1 and BR2 (normally active) and the inducible BR6. There is an excess of positive charges and high contents of serine/threonine in the coded amino acid composition for the BR1 and BR2 sequences. The coded amino acid sequence for the BR6 clone shares homologies with the others but has an excess of negative charges and lacks serine/threonine. This suggested that the P(i) effects observed earlier could be related to differences in phosphorylation between the normal proteins and the BR6 product. This could be confirmed by measurements of phosphorylation, which occurs in the normal giant proteins mainly at seryl residues. P export with giant secretory protein is normally quantitatively important. Thus, BR6 activation should decrease P loss when P(i) pools are lowered because of inducer action.

Journal Article↗
PubMed1982

Vitellogenin in Drosophila melanogaster: a comparison of the YPI and YPII genes and their transcription products.

Clones of genes coding for two of the yolk protein precursors from Drosophila melanogaster, YPI and YPII have been isolated. A single small intron was located in the YPII coding region at about the same position as it is found in YPI (6). The entire intergenic spacer region and most of the exon I from the YPII gene have been sequenced. The "capping" sites for both mRNAs have been determined using the S1 protection and cDNA synthesis methods. Comparison of the sequences which might be involved in transcriptional or translational control of these genes reveals for YPII a Hogness Goldberg box but no indication for a conserved sequence around-70-80 (CAT box). In contrast to YPI it resembles no significant homology to the 3' end of 18S rRNA. The first 60 amino acids of exon I from both genes share little homology except for the hydrophobic amino acids which should be involved in protein secretion.

Animals↗
PubMed1982

Constant and variable parts in the Balbiani ring 2 repeat unit and the translation termination region.

The large Balbiani rings of the chironomids produce giant internally repeated transcripts that are translated into silk-like proteins used for protective tubes. We have cloned fragments of the Balbiani ring 2 (BR2) gene of Chironomus pallidivittatus, normally the most prominent BR, for sequencing and restriction analysis. The results indicate a basic, tandemly arranged repeat unit of 198 bp, consisting of an invariant region of 102 bp followed by a variable region of 96 bp, the latter containing short internal tandem repeats. In the coding strand of both regions, there is a tendency to maximize adenine ( 40%) and minimize cytosine + thymidine (32-33%). Stringency in codon usage and absence of preference for third position nucleotide substitutions between homologous sequences suggest selection at the nucleotide level to be important. Both regions code for peptides rich in basic amino acids, but show distinct differences in other coding properties. The invariant region probably codes for a crystalline domain, and the variable region for a proline-rich, amorphous domain. One of the clones includes the 3' end of the translated region. Surrounding and following two stop codons is a sequence of four short palindromes. Furthermore, the first stop codon is part of a sequence reminiscent of a "TATA box". The possibilities are discussed that this area of the gene might be a target for regulatory molecules controlling translation termination and/or the expression of an overlapping cistron.

Journal Article↗
PubMed1981

Vitellogenin in Drosophila melanogaster: sequence of the yolk protein I gene and its flanking regions.

We have isolated recombinant DNA clones coding for female specific proteins from Drosophila melanogaster. By screening with 32P-(A)+RNA from male and female flies, respectively, we were able to isolate a set of 100 cDNA clones which showed a positive hybridization signal for RNA from female flies. These clones have been rescreened with RNA isolated from fat body of two day old male and female flies. We obtained four positive cDNA clones. Isolation of the corresponding genomic sequences, construction of the physical map and comparing it with the restriction maps published by Barnett et al. (1) led us to conclude that we had isolated the genes coding for two of the three known yolk protein precursors (vitellogenins), YP I and YP II. The sequence of the YP I gene was determined. It gives rise to a protein of 48 700 dalton MW which might be cleaved to a MW of 46 700 during transport. The coding sequence is interrupted by a single intron of 75 bases in length. The proposed leader sequence starts at a region homologous to six heat shock gene sequences at the site of initiation of transcription, suggesting the existence of an 11 bp cap specific consensus sequence for Drosophila melanogaster.

Animals↗
PubMed1979

[Genetics of anapheline populations. III. Electrophoretic analysis of Anopheles aquasalis (Diptera: Culicidae) (author's transl)].

Genetic variation at 26 loci in a natural population of Anopheles aquasalis has been studied by zymogram technique. Average proportion of polymorphic loci is 23% (criterion I) and 34% (criterion II). On the average 8.1% of the genome is in heterozygous condition in each individual. The degree of genetic variability varies from locus to locus. Some enzymes such as AO, alpha-GPDH, 3 loci of HK, 3 loci of LAP, 3 loci of MDH, GOT, 3 loci of ODH and one locus of EST (EST-4), are monomorphic. Of the rest, proportion of heterozygosity varies from the minimum of 0.041 at Xdh-2 to a maximum of 0.493 at Est-2. Similarly, except for the loci Est-2 and Est-3, proportion of heterozygote individuals is extremely low. A. aquasalis has a higher genetic identity with A. evansae (I = 0.625) than with A. argyritarsis (I = 0.543). There seems to be direct correlation between the genetic variability of a species and its capacity to explore diverse ecological nitches.

Animals↗