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R H Holm

Publications and source records attributed to R H Holm.

At least 19 recordsLinked to original sources
PubMed2006

Edge-bridged Mo2Fe6S8 to pN-type Mo2Fe6S9 cluster conversion: structural fate of the attacking sulfide/selenide nucleophile.

Reaction of the edge-bridged double cubane cluster [(Tp)(2)M(2)Fe(6)S(8)(PEt(3))(4)] (1; Tp = hydrotris(pyrazolyl)borate(1-)) with hydrosulfide affords the clusters [(Tp)(2)M(2)Fe(6)S(9)(SH)(2)](3)(-)(,4)(-) (M = Mo (2), V), which have been established as the first structural (topological) analogues of the P(N) cluster of nitrogenase. The synthetic reaction is an example of core conversion, resulting in the transformation M(2)Fe(6)(mu(3)-S)(6)(mu(4)-S)(2) (C(i)) --> M(2)Fe(6)(mu(2)-S)(2)(mu(3)-S)(6)(mu(6)-S) (C(2)(v)), the reaction pathway of which is unknown. The most prominent structural feature of P(N)-type clusters is the mu(6)-S atom, which bridges six iron atoms in two MFe(3)S(3) cuboidal halves of the cluster. The initial issue in core conversion is the origin of the mu(6)-S atom. Utilizing SeH(-) as a surrogate reactant for SH(-) in the system 1/SeH(-)/L(-) in acetonitrile, a series of selenide clusters [(Tp)(2)Mo(2)Fe(6)S(8)SeL(2)](3)(-) (L(-) = SH(-) (4), SeH(-) (5), EtS(-) (6), CN(-) (7)) was prepared. The electrospray mass spectra of 4 and 6 revealed inclusion of one Se atom in each cluster, and (1)H NMR spectra and crystallographic refinements of 4-7 indicated that this atom was disordered over the two mu(2)-S/Se positions. The clusters {[(Tp)(2)Mo(2)Fe(6)S(9)](mu(2)-S)}(2)(5)(-) (8) and {[(Tp)(2)Mo(2)Fe(6)S(8)Se](mu(2)-Se)}(2)(5)(-) (9) were prepared from 2 and 5, respectively, and shown to be isostructural. They consist of two P(N)-type cluster units bridged by two mu(2)-S or mu(2)-Se atoms. It is concluded that, in the preparation of 2, the probable structural fate of the attacking nucleophile is as a mu(2)-S atom, and that the mu(3)-S and mu(6)-S atoms of the product cluster derive from precursor cluster 1. Cluster fragmentation during P(N)-type cluster synthesis is unlikely.

Crystallography, X-Ray↗
PubMed2006

Analogue reaction systems of selenate reductase.

Analogue reaction systems of selenate reductase, which reduces substrate in the overall enzymatic reaction SeO4(2-) + 2H+ + 2e- --> SeO3(2-) + H2O, have been developed using bis(dithiolene) complexes of Mo(IV) and W(IV). On the basis of the results of EXAFS analysis of the oxidized and reduced enzyme, the minimal reaction Mo(IV)OH + SeO4(2-) --> Mo(VI)O(OH) + SeO3(2-) is probable. The square pyramidal complexes [M(OMe)(S2C2Me2)2](1-) (M = Mo, W) were prepared as structural analogues of the reduced enzyme site. The systems, [ML(S2C2Me2)2](1-)/SeO4(2-) (L = OMe, OPh, SC6H2-2,4,6-Pr(i)3) in acetonitrile, cleanly reduce selenate to selenite in second-order reactions whose negative entropies of activation implicate associative transition states. Rate constants at 298 K are in the 10(-2)-10(-4) M(-1) s(-1) range with DeltaS++ = -12 to -34 eu. When rate constants are compared with previous data for the reduction of (CH2)4SO, Ph3AsO, and nitrate by oxygen atom transfer, reactivity trends dependent on the metal, axial ligand L, and substrate are identified. As in all other cases of substrate reduction by oxo transfer, the kinetic metal effect k(2)W > k(2)Mo holds. A proposal from primary sequence alignments suggesting that a conserved Asp residue is a likely ligand in the type II enzymes in the DMSO reductase family has been pursued by synthesis of the [Mo(IV)(O2CR)(S2C2Me2)2](1-) (R = Ph, Bu(t)) complexes. The species display symmetrical eta2-carboxylate binding and distorted trigonal prismatic stereochemistry. They serve as possible structural analogues of the reduced sites of nitrate, selenate, and perchlorate reductases under the proposed aspartate coordination. Carboxylate binding has been crystallographically demonstrated for one nitrate reductase, but not for the other two enzymes.

Crystallography, X-Ray↗
PubMed2006

Precursors to clusters with the topology of the P(N) cluster of nitrogenase: edge-bridged double cubane clusters [(Tp)2Mo2Fe6S8L4]z: synthesis, structures, and electron transfer series.

Members of the cluster set [(Tp)2Mo2Fe6S8L4]z contain the core unit M2Fe6(mu3-S)6(mu4-S)2 in which two MoFe3S4 cubanes are coupled by two Fe-(mu4-S) interactions to form a centrosymmetric edge-bridged double cubane cluster. Some of these clusters are synthetic precursors to [(Tp)2Mo2Fe6S9L2]3-, which possess the same core topology as the P(N) cluster of nitrogenase. In this work, the existence of a three-member electron-transfer series of single cubanes [(Tp)MoFe3S4L3](z) (z = 3-, 2-, 1-) and a four-member series of double cubanes [(Tp)2Mo2Fe6S8L4]z (z = 4-, 3-, 2-, 1-) with L = F-, Cl-, N3, PhS- is demonstrated by electrochemical methods, cluster synthesis, and X-ray structure determinations. The potential of the [4-/3-] couple is extremely low (<-1.5 V vs SCE in acetonitrile) such that the 4- state cannot be maintained in solution under normal anaerobic conditions. The chloride double cubane redox series was examined in detail. The members [(Tp)2Mo2Fe6S8Cl4]4-,3-,2- were isolated and structurally characterized. The redox series includes the reversible steps [4-/3-] and [3-/2-]. Under oxidizing conditions, [(Tp)2Mo2Fe6S8Cl4]2- cleaves with the formation of single cubane [(Tp)MoFe3S4Cl3]1-. The quasireversible [2-/1-] couple is observed at more positive potentials than those of the single cubane redox step. Structure comparison of nine double cubanes suggests that significant dimensional changes pursuant to redox reactions are mainly confined to the Fe2(mu4-S)2 bridge rhomb. The synthesis and structure of [(Tp)2Mo2Fe6S9F2.H2O]3-, a new topological analogue of the P(N) cluster of nitrogenase, is described. (Tp = hydrotris(pyrazolyl)borate(1-)).

Azides↗
PubMed2005

Reaction systems related to dissimilatory nitrate reductase: nitrate reduction mediated by bis(dithiolene)tungsten complexes.

Kinetics of the oxygen atom transfer reactions [M(IV)(QC6H2-2,4,6-Pr(i)3)(S2C2Me2)2]1- + XO --> [M(VI)O(QC6H2-2,4,6-Pr(i)3)(S2C2Me2)2]1- + X in acetonitrile with substrates XO = NO3- and (CH2)4SO have been determined. The reactants are bis(dithiolene) complexes with M = Mo, W and sterically encumbered axial ligands with Q = O, S to stabilize mononuclear square pyramidal structures. The complex [MoIV(SC6H2-2,4,6-Pr(i)3)(S2C2Me2)2]1- is an analogue of the active site of dissimilatory nitrate reductase which in the reduced state contains a molybdenum atom bound by two pyranopterindithiolene ligands and a cysteinate residue. Nitrate reduction was studied with tungsten complexes because of unfavorable stability properties of the molybdenum complexes. Product nitrite was detected by a colorimetric method. All reactions with both substrates are second-order with associative transition states (deltaS approximately -20 eu). Variation of atoms M and Q, together with data from prior work, allows certain kinetics comparisons to be made. Among them, k2W/k2Mo = 25 for (CH2)4SO reduction (Q = S), an expression of the kinetic metal effect. Further, k2S/k2O = 28 and approximately 10(4) for nitrate and (CH2)4SO reduction, respectively, effects attributed to relatively more steric congestion in achieving the transition state with hindered phenolate vs thiolate ligands. The effect is more pronounced with the larger substrate. These results demonstrate the feasibility of tungsten-mediated nitrate reduction by direct atom transfer using molecules with both axial thiolate and phenolate ligands. Complexes of the type [M(IV)(OR)(S2C2Me2)2] are capable of reducing biological N-oxide, S-oxide, and nitrate substrates and thus constitute functional analogue reaction systems of enzymic transformations.

Binding Sites↗
PubMed2005

On [Fe4S4]2+ -(mu2-SR)-M II bridge formation in the synthesis of an A-cluster analogue of carbon monoxide dehydrogenase/acetylcoenzyme A synthase.

The construction of a synthetic analogue of the A-cluster of carbon monoxide dehydrogenase/acetylcoenzyme synthase, the site of acetylcoenzyme A formation, requires as a final step the formation of an unsupported [Fe(4)S(4)]-(mu(2)-SR)-Ni(II) bridge to a preformed cluster. Our previous results (Rao, P. V.; Bhaduri, S.; Jiang, J.; Holm, R. H. Inorg. Chem. 2004, 43, 5833) and the work of others have addressed synthesis of dinuclear complexes relevant to the A-cluster. This investigation concentrates on reactions pertinent to bridge formation by examining systems containing dinuclear and mononuclear Ni(II) complexes and the 3:1 site-differentiated clusters [Fe(4)S(4)(LS(3))L'](2-) (L' = TfO(-) (14), SEt (15)). The system 14/[{Ni(L(O)-S(2)N(2))}M(SCH(2)CH(2)PPh(2))](+) results in cleavage of the dinuclear complex and formation of [{Ni(L(O)-S(2)N(2))}Fe(4)S(4)(LS(3))]- (18), in which the Ni(II) complex binds at the unique cluster site with formation of a Ni(mu(2)-SR)(2)Fe bridge rhomb. Cluster 18 and the related species [{Ni(phma)}Fe(4)S(4)(LS(3))](3)- (19) are obtainable by direct reaction of the corresponding cis-planar Ni(II)-S(2)N(2) complexes with 14. The mononuclear complexes [M(pdmt)(SEt)]- (M = Ni(II), Pd(II)) with 14 in acetonitrile or Me(2)SO solution react by thiolate transfer to give 15 and [M(2)(pdmt)(2)]. However, in dichloromethane the Ni(II) reaction product is interpreted as [{Ni(pdmt)(mu(2)-SEt)}Fe(4)S(4)(LS(3))](2-) (20). Reaction of Et(3)NH(+) and 15 affords the double cubane [{Fe(4)S(4)(LS(3))}(2)(mu(2)-SEt)](3-) (21). Cluster 18 contains two mutually supportive Fe-(mu(2)-SR)-Ni(II) bridges, 19 exhibits one strong and one weaker bridge, 20 has one unsupported bridge (inferred from the (1)H NMR spectrum), and 21 has one unsupported Fe-(mu(2)-SR)-Fe bridge. Bridges in 18, 19, and 21 were established by X-ray structures. This work demonstrates that a bridge of the type found in the enzyme A-clusters is achievable by synthesis and implies that more stable, unsupported single thiolate bridges may require reinforcement by an additional covalent linkage between the Fe(4)S(4) and nickel-containing components. (LS(3) = 1,3,5-tris((4,6-dimethyl-3-mercaptophenyl)thio)-2,4,6-tris(p-tolylthio)benzene(3-); L(O)-S(2)N(2) = N,N'-diethyl-3,7-diazanonane-1,9-dithiolate(2-); pdmt = pyridine-2,6-methanedithiolate(2-); phma = N,N'-1,2-phenylenebis(2-acetylthio)acetamidate(4-); TfO = triflate.).

Acetate-CoA Ligase↗
PubMed2004

Oxygen/sulfur substitution reactions of tetraoxometalates effected by electrophilic carbon and silicon reagents.

Reactions of [MO(4)](2)(-) (M = Mo, W) with certain carbon and silicon electrophiles were investigated in acetonitrile in order to produce species of potential utility in the synthesis of analogues of the sites in the xanthine oxidoreductase enzyme family. Silylation of [MoO(4)](2)(-) affords [MoO(3)(OSiPh(3))](1)(-), which with Ph(3)SiSH is converted to [MoO(2)S(OSiPh(3))](1)(-). Reaction with (Ph(3)C)(PF(6))/HS(-) yields the tetrahedral monosulfido species [MO(3)S](2)(-), previously obtained only from the aqueous system [MO(4)](2)(-)/H(2)S. Dithiolene chelate rings are readily introduced upon reaction with 1,2-C(6)H(4)(SSiMe(3))(2), leading to the square pyramidal trioxo complexes [MO(3)(bdt)](2)(-), a previously unknown dithiolene molecular type. Further ring insertion occurs upon reaction of [WO(3)(bdt)](2)(-) with 1,2-C(6)H(4)(SSiMe(3))(2), giving [WO(2)(bdt)(2)](2)(-). Related reactions occur with [ReO(4)](1)(-). Treatment with 1 equiv of (Me(3)Si)(2)S produces [ReO(3)S](1)(-); with 3 equiv of 1,2-C(6)H(4)(SSiMe(3))(2), [ReO(bdt)(2)](1)(-) is obtained with concomitant Re(VII) --> Re(V) reduction. X-ray structures are reported for [MO(3)S](z)(-) (M = Mo, W, z = 2; M = Re, z = 1), [MO(3)(bdt)](2)(-), and [WO(2)(OSiPh(3))(bdt)](1)(-), a silylation product of [WO(3)(bdt)](2)(-). [MoO(3)(bdt)](2)(-) is related to the site of inactive sulfite oxidase, and [WO(2)(OSiPh(3))(bdt)](1)(-) should closely approximate the metric features of the [(dithiolene)MoO(2)(OH)] site in inactive aldehyde/xanthine oxidoreductase. This work provides convenient syntheses of known and new derivatives of tetraoxometalates, among which is entry to a unique class of oxo-monodithiolene complexes.

Journal Article↗
PubMed2004

Comparative kinetics and mechanism of oxygen and sulfur atom transfer reactions mediated by bis(dithiolene) complexes of molybdenum and tungsten.

Although the kinetics and mechanism of metal-mediated oxygen atom (oxo) transfer reactions have been examined in some detail, sulfur atom (sulfido) transfer reactions have not been similarly scrutinized. The reactions [M(IV)(O-p-C(6)H(4)X')(S(2)C(2)Me(2))(2)](1-) + Ph(3)AsQ --> [M(VI)Q(O-p-C(6)H(4)X')(S(2)C(2)Me(2))(2)](1-) + Ph(3)As (M = Mo, W; Q = O, S) with variable substituent X' have been investigated in acetonitrile in order to determine the relative rates of oxo versus sulfido transfer at constant structure (square pyramidal) of the atom acceptor and of atom transfer at constant structure of the atom donor and metal variability of the atom acceptor. All reactions exhibit second-order kinetics and entropies of activation (-25 to -45 eu) consistent with an associative transition state. At parity of atom acceptor, k(2)(S) (0.25-0.75 M(-1)s(-1)) > k(2)(O) (0.023-0.060 M(-1)s(-1)) with M = Mo and k(2)(S) (4.1-66.7 M(-1)s(-1)) > k(2)(O) (1.8-9.8 M(-1)s(-1)) with M = W. At constant atom donor and X', k(2)(W) > k(2)(Mo) with reactivity ratios k(2)(W)/k(2)(Mo) = 78-184 (Q = O) and 16-89 (Q = S). Rate constants refer to 298 K. At constant M and Q, rates increase in the order X' = Me less, similar OMe < H < Br < COMe < CN; increasing electron-withdrawing propensity accelerates reaction rates. The probable transition state involves significant Ph(3)AsQ...M bond-making (X' rate trend) and concomitant As-Q bond weakening (bond energy order As-O > As-S). Orders of oxo and sulfido donor ability of substrates and complexes are deduced on the basis of qualitative reactivity properties determined here and elsewhere. This work complements previous studies of the reaction systems [M(IV)(O-p-C(6)H(4)X')(S(2)C(2)Me(2))(2)](1-)/XO where the substrates are N-oxides and S-oxides and k(2)(W) > k(2)(Mo) at constant substrate also applies. The reaction order of substrates is Me(3)NO > (CH(2))(4)SO > Ph(3)AsS > Ph(3)AsO. This research provides the first quantitative information of metal-mediated sulfido transfer.

Crystallography, X-Ray↗
PubMed2004

Sulfur bridging interactions of cis-planar NiII-S2N2 coordination units with nickel(II), copper(I,II), zinc(II), and mercury(II): a library of bridging modes, including NiII(micro2-SR)2MI,II rhombs.

Sulfur bridging interactions between three cis-planar NiII-S2N2 complexes and NiII, CuI,II, ZnII, and HgII reactants were investigated by synthesis and X-ray crystal structures of some 24 complexes. This work was stimulated by recent crystallographic structures of the A-cluster of carbon monoxide dehydrogenase/acetylcoenzyme A synthase. This bridged biological assembly has the minimal formulation [Fe4S4]-(micro2-SCys)-[M((micro2-SCys)2Gly)Ni] with M = NiII, CuI, and ZnII at sites distal and proximal, respectively, to the iron-sulfur cluster. Bridges supported by representations of the distal nickel site were sought by reactions of the complexes [NiII(LH-S2N2)]2- and [NiII(LR-S2N2)], with 5-5-5 chelate ring patterns. Reaction products implicate the bridges Ni-(micro2-S)1,2-M in a variety of molecular structures, some with previously unknown connectivities of bridge atoms. The most frequently encountered bridge units are the nonplanar rhombs Ni(2-S)2M involving both sulfur atoms of a given complex. Those with M = NiII are biologically relevant inasmuch as the catalytic metal at the proximal site is nickel. The complex [Ni(L-655)]2-, containing the 6-5-5 ring pattern and coordination sphere of the distal nickel site, was prepared and structurally characterized. It was shown to sustain Ni2(micro2-S)2 rhombic interactions in the form of trinuclear [[Ni(L-655)]2Ni]2- and [[Ni(L-655)]Ni(R2PCH2CH2PR2)] (R = Et, Ph) in which the second NiII simulates the proximal site. Bridging interactions of NiII-S2N2 complexes are summarized, and geometrical features of Ni2(2-S)2 rhombs in these complexes, as dependent on ring patterns, are considered (LH-S2N2 = N,N'-ethylenebis(2-mercaptoisobutyramide)(4-); LR-S2N2 = trans-rac-N,N'-bis(2-mercapto-2-methylprop-1-yl)-1,2-cyclohexanediamine(2-); L-655 = N-(2-mercaptopropyl)-N'-(2'-mercaptoethyl)glycinamide(4-)).

Bridged-Ring Compounds↗
PubMed2004

Ligand K-edge X-ray absorption spectroscopy of [Fe4S4]1+,2+,3+ clusters: changes in bonding and electronic relaxation upon redox.

Sulfur K-edge X-ray absorption spectroscopy (XAS) is reported for [Fe(4)S(4)](1+,2+,3+) clusters. The results are quantitatively and qualitatively compared with DFT calculations. The change in covalency upon redox in both the [Fe(4)S(4)](1+/2+) (ferredoxin) and the [Fe(4)S(4)](2+/3+) (HiPIP) couple are much larger than that expected from just the change in number of 3d holes. Moreover, the change in the HiPIP couple is higher than that of the ferredoxin couple. These changes in electronic structure are analyzed using DFT calculations in terms of contributions from the nature of the redox active molecular orbital (RAMO) and electronic relaxation. The results indicate that the RAMO of HiPIP has 50% ligand character, and hence, the HiPIP redox couple involves limited electronic relaxation. Alternatively, the RAMO of the ferredoxin couple is metal-based, and the ferredoxin redox couple involves extensive electronic relaxation. The contributions of these RAMO differences to ET processes in the different proteins are discussed.

Electron Transport↗
PubMed2004

Initial structure modification of tetrahedral to planar nickel(II) in a nickel-iron-sulfur cluster related to the C-cluster of carbon monoxide dehydrogenase.

A method has been devised that creates a planar Ni(II) site from a tetrahedral site in a NiFe(3)S(4) cubane-type cluster. Reaction of [(Ph(3)P)NiFe(3)S(4)(LS(3))](2)(-) (2) with 1,2-bis(dimethylphosphino)ethane affords [(dmpe)NiFe(3)S(4)(LS(3))](2)(-) (3), isolated in ca. 45% yield as (Et(4)N)(2)[3a].2.5MeCN and (Et(4)N)(2)[3b].0.25MeCN, both of which occur in triclinic space group P. Each crystalline form contains two crystallographically inequivalent clusters with the same overall structure but slightly different dimensions. The cluster is bound by three thiolate terminal ligands to semirigid cavitand ligand LS(3). The NiFe(3)S(4) core contains three tetrahedral sites, one Fe(micro(3)-S)(3)(SR) and two Fe(micro(3)-S)(2)(micro(2)-S)(SR) with normal metric features, and one distorted square planar Ni(micro(3)-S)(2)P(2) site in a Ni(micro(3)-S)(2)Fe face with mean bond lengths Ni-P = 2.147(9) A and Ni-S = 2.29(2) A. The opposite Fe(2)(micro(3)-S)(micro(2)-S) face places the micro(2)-S atom at nonbonding and variable distances (2.60-2.90 A) above the nickel atom. Binding of the strong-field ligand dmpe results in a planar Ni(II) site and deconstruction of the full cubane geometry. The structure approximates that established crystallographically in the C-cluster of C. hydrogenoformans carbon monoxide dehydrogenase whose NiFe(4)S(4) core contains a planar NiS(4) site and three tetrahedral FeS(4) sites in a fragment that is bridged by sulfide atoms to an exo iron atom. Mössbauer studies of polycrystalline samples containing both clusters 3a and 3b reveal the presence of at least two cluster types. The spectroscopically best defined cluster accounts for ca. 54% of total iron and exhibits hyperfine interactions quite similar to those reported for the S = (5)/(2) state of the protein-bound cubane-type cluster [ZnFe(3)S(4)](1+), whose Mössbauer spectrum revealed the presence of a high-spin Fe(2+) site and a delocalized Fe(2.5+)Fe(2.5+) pair. Development of reactions leading to a planar nickel and a sulfide-bridged iron atom is requisite to attainment of a synthetic analogue of this complex protein-bound cluster. This work demonstrates a tetrahedral (2) --> planar (3) Ni(II) stereochemical conversion can be effected by binding of ligands that generate a sufficiently strong in-plane ligand field (dmpe = 1,2-bis(dimethylphosphino)ethane, LS(3) = 1,3,5-tris((4,6-dimethyl-3-mercaptophenyl)thio)-2,4,6-tris(p-tolylthio)benzene(3-)).

Aldehyde Oxidoreductases↗
PubMed2004

An expanded set of functional groups in bis(dithiolene)tungsten(IV,VI) complexes related to the active sites of tungstoenzymes, Including WIV-SR and WVI-O(SR).

The active sites of tungstoenzymes have the formulations W(IV,V)L(S(2)pd)(2) and W(VI)LL'(S(2)pd)(2), in which two pyranopterindithiolene cofactor ligands (S(2)pd) are chelated to a tungsten atom. Ligands L and/or L' are not fully defined in any wild-type enzyme. The feasibility of various coordination fragments (functional groups) in potential bis(dithiolene)tungsten site analogues has been examined in previous work by exploratory synthesis. This investigation expands the range of accessible functional groups. The synthetic scheme originates with [W(CO)(2)(S(2)C(2)Me(2))(2)], whose carbonyl groups are labile to substitution. Complexes [W(IV,VI)LL'(S(2)C(2)Me(2))(2)](1-) are described in terms of their functional groups W(IV,VI)LL'. Reaction of the dicarbonyl with formate in acetonitrile/THF affords W(IV)(CO)(eta(1)-HCO(2)) (4) and in Me(2)SO W(VI)O(eta(1)-HCO(2)) (7) by an oxo transfer reaction. Carboxylates yield six-coordinate W(IV)(eta(2)-O(2)CR) (1-3, R = Ph, Me, Bu(t)) with C(2)(v) symmetry. Reaction of 3 (R = Bu(t)) with Me(3)SiSR (R = C(6)H(2)-2,4,6-Pr(i)(3)) gives W(IV)(SR) (5), which undergoes oxo and sulfido atom transfer to form W(VI)O(SR) (8) and W(VI)S(SR) (9), respectively. Attempts to prepare corresponding selenolate complexes, pertinent to the active site of formate dehydrogenase, were unsuccessful, including reactions of W(VI)OCl (10) with RSe(-). Structure proofs of 2-10 were obtained by X-ray structure determinations. Some 26 functional group types in bis(dithiolene)W(IV,V,VI) molecules have now been achieved by synthesis. It remains to be seen which are incorporated in an enzyme site. A number of them (e.g., 5) are directly analogous to molybdoenzyme sites, and may possess corresponding reactivity with biological substrates, as do W(IV)(OR)/W(VI)O(OR) (prepared earlier) in the reduction of N- and S-oxides by atom transfer.

Aldehyde Oxidoreductases↗
PubMed2004

Structural conversions of molybdenum-iron-sulfur edge-bridged double cubanes and P(n)-type clusters topologically related to the nitrogenase P-cluster.

Edge-bridged Mo-Fe-S double cubanes are versatile precursors for the synthesis of other clusters of the same nuclearity. Thus, the double cubane [(Tp)(2)Mo(2)Fe(6)S(8)(PEt(3))(4)] sustains terminal ligand substitution with retention of the Mo(2)Fe(6)(micro(3)-S)(6)(micro(4)-S)(2) core structure and rearrangement to the Mo(2)Fe(6)(micro(2)-S)(2)(micro(3)-S)(6)(micro(6)-S) topology of the nitrogenase P(N) cluster upon reaction with certain nucleophiles. Four distinct processes for the conversion of double cubanes to P(N)-type clusters are documented, affording the products [(Tp)(2)Mo(2)Fe(6)S(9)(SR)(2)](3)(-), [(Tp)(2)Mo(2)Fe(6)S(8)(OMe)(3)](3)(-), and [(Tp)(2)Mo(2)Fe(6)S(7)(OMe)(4)](2)(-). In the latter clusters, two methoxides are terminal ligands and one or two are micro(2)-bridging ligands. The reverse transformation of a P(N)-type cluster to an edge-bridged double cubane has been demonstrated by the reaction of [(Tp)(2)Mo(2)Fe(6)S(8)(OMe)(3)](3)(-) with Me(3)SiX to afford [(Tp)(2)Mo(2)Fe(6)S(8)X(4)](2)(-) (X = Cl(-), Br(-)). Edge-bridged double cubanes have been obtained in the oxidation states [Mo(2)Fe(6)S(8)](2+,3+,4+). The stable oxidation state of P(N)-type clusters is [Mo(2)Fe(6)S(9)](+). Structures of five double cubanes and four P(N)-type clusters are reported. The P(N)-type clusters are synthetic representations of the biologically unique topology of the native P(N) cluster. Best-fit superpositions of the native and synthetic cluster cores gives weighted rms deviations in atom positions of 0.20-0.38 A. This study and an earlier investigation (Zhang, Y.; Holm, R. H. J. Am. Chem. Soc. 2003, 125, 3910-3920) provide a comprehensive account of the synthesis of structural analogues of the native P(N) cluster and provide the basis for continuing investigation of the synthesis of weak-field Mo-Fe-S clusters related to nitrogenase. (Tp = tris(pyrazolyl)hydroborate(1-).)

Crystallography, X-Ray↗
PubMed2003

Nucleophilic reactivity and oxo/sulfido substitution reactions of MVIO3 Groups (M = Mo, W).

The nucleophilic reactivity of oxo ligands in the groups M(VI)O(3) in the trigonal complexes [(Me(3)tacn)MO(3)] (M = Mo (1), W (10)) and [(Bu(t)(3)tach)MO(3)] (M = Mo (5), W (14)) has been investigated. Complexes 1/10 can be alkylated with MeOTf to give [(Me(3)tacn)MO(2)(OMe)](1+) (2/11), silylated with Pr(i)(3)SiOTf to form [(Me(3)tacn)MO(2)(OSiPr(i)(3))](+) (3/12), and protonated with HOTf to yield [(Me(3)tacn)MoO(2)(OH)](+) (4). Similarly, complexes 5/14 can be silylated to [(Bu(t)(3)tach)MO(2)(OSiPr(i)(3))](+) (6/15) and protonated to [(Bu(t)(3)tach)MO(2)(OH)](+) (7/16). Products were isolated as triflate salts in yields exceeding 70%. When excess acid was used, the dinuclear mu-oxo species [(Bu(t)(3)tach)(2)M(2)O(5)](2+) (8/17) were obtained. X-ray structures are reported for 2-4, 6-8, 12, and 15-17. All mononuclear complexes have dominant trigonal symmetry with a rhombic distortion owing to a M[bond]OR bond (R = Me, SiPr(i)(3), H), which is longer than M[double bond]O oxo interactions; the latter exert a substantial trans influence on M[bond]N bond lengths. Oxo ligands in 5/14 undergo replacement with sulfide. Lawesson's reagent effects formation of [(Bu(t)(3)tach)MS(3)] (9/18), 14 with excess B(2)S(3) yields incompletely substituted [(Bu(t)(3)tach)WOS(2)] (20), and 5 with excess B(2)S(3) yields [(Bu(t)(3)tach)Mo(IV)O(S(4))] (19). The structures of 9, 19, and 20 are reported. Precedents for M(VI)S(3) groups in five- and six-coordinate molecules are limited. This investigation is the first detailed study of the behavior of M(VI)O(3) groups in nucleophilic and oxo/sulfido substitution reactions and should be useful in synthetic approaches to the active sites of the xanthine oxidase enzyme family and of certain tungstoenzymes. (Bu(t)(3)tach = 1,3,5-tri-tert-butyl-1,3,5-triazacyclohexane, Me(3)tacn = 1,4,7-trimethyl-1,4,7-triazacyclonane; OTf = triflate).

Crystallography, X-Ray↗
PubMed2003

Reactions of site-differentiated [Fe4S4]2+, 1+ clusters with sulfonium cations: reactivity analogues of biotin synthase and other members of the S-adenosylmethionine enzyme family.

The first examples of reduced 3:1 site-differentiated Fe(4)S(4) clusters have been synthesized as [Fe(4)S(4)(LS(3))(SR')](3-) (R=Et, Ph) by chemical reduction of previously reported [Fe(4)S(4)(LS(3))(SR')](2-) clusters, and isolated as NBu(4)(+) salts. The reduced clusters were characterized by electrochemistry and EPR, 1H NMR, and Mössbauer spectroscopies. The reaction of oxidized clusters with the sulfonium ions [PhMeSCH(2)R](+) (R=COPh, p-C(6)H(4)CN) in acetonitrile results in electrophilic attack on coordinated thiolate and production of PhSMe and R'SCH(2)R when the reaction occurs at the unique cluster site. The reactions of reduced clusters with these substrates were examined in relation to the reductive cleavage of the cofactor S-adenosylmethionine, the first step in the catalytic cycle of biotin synthase. Product analysis indicated a approximately 4:1 ratio of reductive cleavage to electrophilic attack. The cleavage products are PhSMe, R'SCH(2)R, and RCH(3) for both clusters, and also PhMeS=CHR and RCH(2)CH(2)R from secondary reactions when the sulfonium cation is [PhMeSCH(2)COPh](+) and [PhMeSCH(2)-p-C(6)H(4)CN](+), respectively. Reaction schemes for reductive cleavage based on product distributions are presented. These results parallel those previously reported for homoleptic [Fe(4)S(4)(SR')(4)](2-,3-) clusters and demonstrate that site-differentiated clusters sustain a high percentage of reductive cleavage, a necessary result in the context of biotin synthase activity preceding an investigation of the mode of binding of sulfonium substrates and inhibitors at the unique iron site. [LS(3)=1,3,5-tris[(4,6-dimethyl-3-mercaptophenyl)thio]-2,4,6-tris(p-tolylthio)benzene(3-)].

Binding Sites↗