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R R Holmes

Publications and source records attributed to R R Holmes.

5 recordsLinked to original sources

Coordination of carbonyl and carboxyl oxygen atoms with phosphorus in the presence of hydrogen bonding. P-O donor action.

A series of phosphorus compounds 1-5 containing carbonyl or carboxyl groups was obtained and subjected to X-ray analysis. Syntheses of the phosphoranes 1 and 5 were effected by oxidation reactions using potassium permaganate, while the phosphine oxide 2 was obtained by oxidation with hydrogen peroxide. The readily available phosphines 3 and 4 were included in the study. The structures revealed that P-O coordination occurred for 1-3 in the presence of extensive hydrogen bonding and led to trigonal bipyramidal geometries. A similar structure was observed for 4 in the absence of hydrogen bonding. (31)P chemical shifts indicate retention of the basic coordination geometries in solution. Consideration of the chirality of the phosphoranes 1 and 5 leads to a pair of mirror images that are possible in solution but exist in preferred isomeric forms in the crystalline state. Evaluation of the energies of two competing bonding types indicated a range for P-O coordination above and below the hydrogen bond energy. The results suggest that phosphoryl transfer enzyme mechanisms should benefit by taking into account donor interactions to phosphorus by residues at active sites in addition to the inclusion of hydrogen bonding interactions.

Journal Article↗

Synthesis and structure of cyclic phosphate, phosphoramidate, phosphonates, and phosphonium salts. Phosphatrane formation.

Reaction of tris(2-hydroxy-3,5-dimethylbenzyl)amine (6) with phosphorus reagents led to the formation of the phosphoramidate, N[CH2(Me2C6H2)O]2PO (1), the phosphate N[CH2(Me2C6H2)O]2[CH2(Me2C6H2)OH]P(O)(OPh) (2), the phosphonium salts N[CH2(Me2C6H2)O]3PMe+I- (3A) and N[CH2(Me2C6H2)O]3PMe+I3- (3B), and the phosphonates N[CH2(Me2C6H2)O]2[CH2(Me2C6H2)OH]P(O)Me (4) and N[CH2(Me2C6H2)O]2[CH2(Me2C6H2)OSiMe3]P(O)Me (5). X-ray analysis provided molecular structures for all of the compounds. The solid-state structural representations were supported in solution by an analysis of the NCH2 proton NMR patterns. The structures of 3A and 3B show the presence of phosphatranes with weak P-N donor interactions. These represent the first phosphatranes containing all six-membered rings. Variable temperature analysis of the 1H NMR spectra of 3A indicates fluxional behavior whereby a racemic mixture of the chiral phosphonium salt rapidly intraconverts at room temperature. The activation energy for the enantiomeric conversion of the clockwise and anticlockwise orientations of the propeller-like phosphatrane is 11.2 kcal/mol, which is compared to that of the isoelectronic silatrane N[CH2(Me2C6H2)O]3SiMe (E), 10.3 kcal/mol.

Journal Article↗

A new 99mTc-complex with a germanium-hydrazide (GeTH) ligand.

A new tetrahydrazido-germanium (GeTH) ligand was synthesized, characterized and complexed with 99mTc. The negatively charged 99mTc-chelate was shown to form in high yields at neutral pH in the absence of other reducing agents and exhibits high in vitro and in vivo stability.

Animals↗

A square pyramidal model for ribonuclease action.

A mechanism incorporating a square pyramidal model (SP) is presented for the action of bovine pancreatic ribonuclease. Its formulation is based on structural principles governing pentacoordinate behavior. The model is compared with a previous trigonal bipyramidal (TP) representation with regard to the geometry of the active site and enzyme constraints. Of two variants of the SP model, an adjacent (cis displacement) and in-line (trans displacement) process, the in-line mechanism, as with the TP model, fits existing model studies. Consideration of the energetics of the SP vs. the TP model leads to an estimated energy difference of about 1-2 kcal/mol. This suggests that the preferred model may be intermediate in geometry between the two idealized representations for the enzymatic hydrolysis. Comparisons are made showing that pseudorotation is an unlikely process in either model.

Animals↗