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R W Giese

Publications and source records attributed to R W Giese.

At least 19 recordsLinked to original sources
PubMed1999

Preparation of an IMI dye (imidazole functional group) containing a 4-(N,N-dimethylaminosulfonyl)-2,1,3-benzoxadiazole fluorophore for labeling of phosphomonoesters.

We are studying dye-imidazole conjugates ("IMI dyes") as reagents for labeling phosphomonoesters such as nucleotides. Previously we have employed a BODIPY dye in our IMI reagents, and analyzed the labeled products by capillary electrophoresis with laser-induced fluorescence detection (CE-LIF) involving an argon ion laser. (The BODIPY fluorophore is a 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene). Here we broaden the technology by preparing a DBD-IMI dye [DBD = 4-(N,N-dimethylaminosulfonyl)-2,1,3-benzoxadiazole], and using a helium-cadmium laser. While DBD-IMI (IMI3) is about 50x more stable photolytically than a BODIPY-IMI dye (IMI2, a conjugate of a BODIPY dye with histamine, was tested), the detection limit for IMI2 (5.10(-11) M; S/N = 5, CE-LIF with an argon ion laser) is tenfold better than that for IMI3 (5.10(-10) M, S/N = 5, helium-cadmium laser). IMI3 conjugates of the four major DNA nucleotides were prepared and detected by CE-LIF.

Electrophoresis↗
PubMed1998

Phosphate-specific fluorescence labeling with BO-IMI: reaction details.

Previously we reported than BO-IMI, a reagent which contains a BODIPY fluorophore linked to an imidazole group, can be used to covalently label a phosphomonoester in a single step under aqueous conditions [P. Wang, R.W. Giese, Anal. Chem. 65 (1993) 3518]. The reaction was conducted in the presence of a water-soluble carbodiimide 1-ethyl-3-(3'-N,N'-dimethylaminopropyl) carbodiimide [EDC] to activate the phosphomonoester, and the coupling took place onto both the N1 and N3 imidazole nitrogens of BO-IMI. Whether the two BO-IMI-phosphomonoester regioisomers migrated separately or together during capillary electrophoresis depended on the pH, due to a difference in their pKa values. Since then, we have studied the reaction in more detail leading to the information reported here. First, we have learned that the regioisomer ratio changes during the course of the reaction, and found that the mechanism involves both spontaneous and BO-IMI-catalyzed hydrolysis of the less stable isomer. Second, there is a background reaction in which BO-IMI becomes attached to EDC. Third, the BO-IMI-phosphomonoester product (a mixture of two isomers), that is observed by capillary electrophoresis at an alkaline pH, is found to no longer contain the two fluorine atoms present in the starting BO-IMI reagent. This is because they are placed by hydroxy groups at high pH. Finally, an event was discovered which complicates the detection of less than about 60 fmol of a phosphomonoester with BO-IMI: hydrolysis of a tiny fraction of the BO-IMI takes place during the coupling reaction, which leads to chemical noise in the capillary electropherogram.

Boron Compounds↗
PubMed1998

N-hydroxysuccinimide ester labeling 5'-aminoalkyl DNA oligomers: reaction conditions and purification.

Difficulties were encountered in labeling 5'-aminoalkyl DNA oligomers with glycolketo electrophore N-hydroxysuccinimide esters in aqueous sodium bicarbonate (a common base for this purpose), followed by C18-silica reversed-phase high-performance liquid chromatography (HPLC) to achieve purification. The electrophore-labeled oligomers were not separated readily either from the hydrolyzed electrophore or from the starting oligomer. This problem was overcome by conducting the reaction with triethylamine as a base, organic washing the reaction mixtures after evaporation, and separating on a C18-poly(styrene-divinylbenzene) HPLC packing.

Acetonitriles↗
PubMed1998

Contrasting behavior of pentafluorophenoxyacetone and pentafluorobenzyloxyacetone in electron impact and electron capture mass spectrometry.

Towards the goal of finding new ketone electrophores suitable as molecular labels for electrophoric release tags, pentafluorophenoxyacetone (1) and pentafluorobenzyloxyacetone (2) were prepared. Both ketones were evaluated by electron capture (EC) and electron impact (EI) modes of mass spectrometry (MS). By EC-MS, 1 nearly gave a single ion (as desired), whereas 2 gave many ions. This behavior was completely reversed in EI-MS. To account for certain ion fragments in the EC mass spectrum of 2, an anion radical McLafferty-type rearrangement and loss of a carbene neutral were postulated. Electron impact of 1 gave an abundant ion at m/z 117 (C5F3+), which was suggested to be a diyne cation.

Acetone↗
PubMed1997

Electrophore mass tag dideoxy DNA sequencing.

Toward a goal of dideoxy sequencing DNA utilizing electrophore labels, we prepared four electrophore-labeled DNA oligonucleotide primers. Each primer has a different electrophore and DNA sequence but a common glycol keto (alpha,beta-dihydroxyketo) release group. Cleavage of this latter group by either periodate oxidation or a thermal retroaldol reaction releases the electrophores for detection by mass spectrometry. Successful sequencing data with these primers was obtained by capillary electrophoresis on an ABI Model 310 after fluorescence dideoxy terminator cycle sequencing reactions were conducted. In a separate experiment, it was demonstrated that a cocktail of the four electrophore DNA primers could be detected as a dried sample spot by CO2 laser desorption/capillary collection/gas chromatography electron capture mass spectrometry. These results establish some feasibility for our long-term goal of high-speed multiplex electrophore mass tag dideoxy DNA sequencing. Ultimately we plan to use a higher number of electrophore mass tags and to rely on direct detection of the desorbed electrophores by electron capture time-of-flight mass spectrometry.

Chromatography, High Pressure Liquid↗
PubMed1997

Hydrazide as a ligand moiety in immobilized metal ion affinity chromatography. Separation of BO-IMI and BODIPY-hydrazide.

BODIPY hydrazide (BO-HZ, a commercially available fluorescent dye) and BO-IMI (obtained by coupling the hydrazide moiety of BODIPY to the carboxyl group of N-acetylhistidine) were separated on three forms of a Sepharose-iminodiacetic acid column: Cu(II), Ni(II) and Zn(II). Whereas BO-IMI eluted first on the Cu(II) and Ni(II) columns (a pH gradient from 7.0 to 2.0 was applied), it eluted last on the Zn(II) column. BO-HZ eluted from the Zn(II) column without displacing this metal. The explanation suggested for these results is that BODIPY hydrazide undergoes strong, bidendate binding only to the Cu(II) and Ni(II) columns.

Boron Compounds↗
PubMed1997

Electron-capture detection: difluorobenzyl and related electrophores.

Difluorobenzyl derivatives (several isomers were tested) of 4-hydroxyacetophenone were synthesized and found to have similar properties (retention and response) by both reversed-phase HPLC and GC-ECD relative to each other, and also relative to that of a corresponding conventional pentafluorobenzyl derivative. The same was true for a representative difluorobenzyl derivative of thymine and 1-naphthoic acid. Overall, the responses by GC-ECD for the same core structure were only about two- to four-fold lower for a difluorobenzyl compared to a corresponding pentafluorobenzyl derivative. This makes a difluorobenzyl derivative attractive as an HPLC-UV retention marker, and sometimes as a substitute for a pentafluorobenzyl derivative (to help overcome an interference) in a method based on detection by electron capture. We also observed, somewhat as an aside, that the GC-ECD response of the benzyl derivative of 4-hydroxyacetophenone was only seven-fold lower than that of the corresponding pentafluorobenzyl derivative, and that this former benzyl derivative gave a 2.10(4) higher response than acetophenone. Thus, replacing the ring hydrogen atoms of a benzyl group with fluorine atoms had a relatively small impact on both the hydrophobicity and electron capture properties of the compounds tested here.

Chromatography, Gas↗
PubMed1997

Detection via laser desorption and mass spectrometry of multiplex electrophore-labeled albumin.

Albumin was reacted with a mixture of six electrophore N-hydroxysuccinimide esters, each of which possessed an interior glycolketo linkage. The purpose of this linkage is to release the attached electrophore as a ketone when heated, due to a thermal retro-aldol reaction. The multiplex electrophore-labeled albumin was detected as a dried spot deposited on a polyimide membrane by laser desorption/capillary collection (of the released ketone electrophores)/off-line gas chromatography/electron capture-mass spectrometry. This encourages further study of such electrophore labels in immunoassays and related techniques, where there is a need to make advances in multi-analyte detection.

Albumins↗
PubMed1995

General method for determining ethylene oxide and related N7-guanine DNA adducts by gas chromatography-electron capture mass spectrometry.

A 112-micrograms sample of DNA was spiked with 103 pg of N7-(2'-hydroxyethyl)guanine and 100 pg of N7-(2'-hydroxyethyl-d4)guanine, the internal standard. The sample was subjected to the following sequence of steps: heating at 100 degrees C, precipitation of the DNA with HCl, reaction with nitrous acid to form the corresponding xanthines, reaction twice with pentafluorobenzyl bromide (first to derivatize NH, then OH), solid-phase extraction on silica and detection by gas chromatography-electron capture mass spectrometry. The absolute, overall yield of final product for both the analyte and internal standard was 9.7%. Conveniently, the three chemical reactions are conducted sequentially in the same vial and, aside from a washing step, are separated only by evaporations. Corresponding N7-guanine methyl, phenyl and styrene oxide adducts were detected at about the 50-ng level by the procedure, to indicate the generality of the method.

DNA↗
PubMed1995

Phosphate-specific fluorescence labeling of pepsin by BO-IMI.

Pepsin (3.6 nmol) was detected by the following three-step procedure: (i) reaction with a 20-fold molar excess of BO-IMI (a fluorophore containing a reactive imidazole group) in the presence of a 150-fold molar excess of 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC) and 2% sodium dodecyl sulfate; (ii) gel filtration (spin column) to remove most of the residual BO-IMI; and (iii) capillary electrophoresis with laser-induced fluorescence detection. For the latter step, 8.5 x 10(-7) of the original sample was injected. BO-IMI/EDC targets phosphomonoesters and does not label albumin (prior knowledge). Progressive dephosphorylation of pepsin with acid phosphatase reduced its labeling with BO-IMI. Thus, the BO-IMI, as intended, labels the phosphate group on pepsin. Such BO-IMI labeling should be useful in general for studying phosphoproteins and phosphopeptides.

Fluorescence↗
PubMed1995

Masking as a mechanism for evaporative loss of trace analyte, especially after solid-phase extraction.

Using a Pasteur pipette plugged with silanized glass wool and packed with C18-silica particles, we attempted to remove K2CO3 from an aqueous acetonitrile solution. In spite of extensive washing of the column with water after the sample was applied, elution with acetonitrile followed by evaporation gave a visible, white residue. It was found that the residue was derived from both the sample and the packing, including particles from the latter. Substitution of a plastic column/polyethylene frit for the Pasteur pipette/glass wool gave a more consistent residue, apparently because this improved the retention of particles. Subsequent experiments were conducted in the plastic hardware. The amount of the residue was observed to vary as much as 19-fold when C18-silica particles were tested from different manufacturers, and the residue could be reduced in amount as much as 9-fold when a column was prepared in the laboratory vs. the use of a comparable, pre-packed column. The water itself contributed some of the residue: even the "purest" water routinely available left a visible residue when 1.0 ml was appropriately evaporated (e.g. on Saran Wrap in a microwave oven). The recovery of an arbitrary trace analyte and internal standard (pentafluorobenzylated nucleobases at the low pg level) was 32% less when they were evaporated in acetonitrile that had been passed through an acetonitrile and water-washed cartridge containing C18-Si vs. evaporation in untreated acetonitrile. Collectively these results reveal that an evaporation can risk some loss of an analyte from masking by even subtle solvent contaminants.(ABSTRACT TRUNCATED AT 250 WORDS)

Acetonitriles↗
PubMed1993

Chemical transformation/derivatization of O6-methyl- and O6-(hydroxyethyl)guanine for detection by GC-EC/MS.

In this project we set out to make an important class of DNA adducts, comprising O6-alkyl and O6-(hydroxyalkyl)guanines, susceptible to sensitive detection by GC-EC/MS. While existing literature indicated that pentafluorobenzylation would be useful for the ring NH site on these compounds, how to best overcome the polarity of the exocyclic NH2 and OH groups, without losing the O6-alkyl moiety, was less clear. Working with O6-methylguanine and O6-(2'-hydroxyethyl)guanine as representative analytes, we found that the NH2 group could be converted into fluoro without loss of the O6 substituent. For the OH group, a comparison of several derivatives (OR') led to R' = tert-butyl as the best choice at this stage. The latter work, especially via NMR, also allowed exact structural assignments to be made for the N7 and N9 pentafluorobenzyl isomeric derivatives that formed. Of these R' derivatives, the N7 isomers migrated slower on silica-TLC, had higher GC retention times, had lower responses by GC-EC/MS, and were preferentially destroyed as the GC column aged. However, the N9 isomer was slower on TLC when the OH was not derivatized. This behavior was rationalized using a concept of "polar footprint" for the derivatives. The concept also seemed to explain the puzzling GC-EC/MS behavior of some related compounds in our laboratory. Apparently the polar footprint should be minimized in designing derivatives for trace detection by GC-EC/MS.

Chromatography, Thin Layer↗
PubMed1993

"Chitin Leash": a polysaccharide heterobifunctional cross-linking agent which can be cleaved by lysozyme.

6-O-[(2-Hydroxyethyl)poly(2-oxyethyl)]chitosan ("glycolchitosan") was oxidatively cleaved with nitrous acid and then partly acetylated with acetic anhydride, reacted with bromoacetyl-N-hydroxysuccinimide, and reacted further with acetic anhydride. Conditions were selected, including fractionation by size-exclusion chromatography, so that the resulting "Chitin Leash" had an estimated, average molecular weight of 10,000 (dextran standards), corresponding to a length of approximately 40 sugar residues. It possessed 0.9 terminal aldehyde and 2.6 random (presumably) side-chain bromoacetyl reactive groups per chain (average values). As a model system, the Chitin Leash was used to crosslink staphylococcal nuclease (SNase) to ribonuclease A (RNase) with retention of 75 and 78%, respectively, of the starting enzyme activities. For this coupling, the Nase was first converted to a sulfhydryl SNase derivative which retained 74% of the activity of starting enzyme. The yields in this synthesis were: 13% Chitin Leash from glycolchitosan, 24% Chitin Leash-RNase from Chitin Leash and 45% SNase-Chitin Leash-RNase from the latter conjugate. The ratio of SNase to RNase in this conjugate was 1.0:0.94. In a second preparation, in which [14C]acetic anhydride was used, a longer reaction time was employed for the coupling of Chitin Leash to RNase. This gave a 1.0:1.8:0.95 molar ratio of Nase: [14C]Chitin Leash: RNase, revealing multiple attachment of the [14C]Chitin Leash to RNase. The activity of the RNase in the final conjugate was 20%. The latter conjugate was approximately 70% hydrolyzed by diaminooctyl-succinyl-lysozyme, disconnecting the two enzymes while not affecting their activities.

Carbohydrate Sequence↗
PubMed1993

4-(Trifluoromethyl)-2,3,5,6-tetrafluorobenzyl bromide as a new electrophoric derivatizing reagent.

4-(Trifluoromethyl)-2,3,5,6-tetrafluorobenzyl bromide (TTBB) was synthesized in a single step from alpha,alpha,alpha,2,3,5,6-heptafluoro-p-xylene. The purpose of TTBB is to function as an analogue of pentafluorobenzyl bromide (PFBB) in electrophoric derivatization reactions prior to detection by gas chromatography-electron-capture negative ion mass spectrometry (GC-ECNI-MS). In more detail, it was anticipated that TTBB could be used along with, or as a substitute for, PFBB to help control some interferences and confirm results. This is because a TTBB-product (of an analyte) would have different retention and sometimes m/z characteristics than a corresponding PFBB product in GC-ECNI-MS, while the two products should be similar in their ease of formation and yields. Results demonstrating these expectations were achieved by derivatizing and detecting two analytes with these reagents: N7-(2-hydroxyethyl)xanthine, and 2,3-pyrenedicarboxylic acid.

Fluorobenzenes↗
PubMed1993

KO2 chemical transformation/mass spectrometry detection of covalent damage to the DNA of cultured human lymphocytes exposed to benzo[a]pyrene.

Cultured human lymphocytes were exposed to benzo[a]pyrene (B[a]P), and diol epoxide-type DNA adducts arising from this chemical were detected by a method consisting of the following sequence of steps: (1) isolate the DNA; (2) subject the DNA to mild acid hydrolysis to release the polyaromatic moiety as a tetrahydrotetrol; (3) add an internal standard; (4) oxidize the tetrahydrotetrol with potassium superoxide to pyrene-2,3-dicarboxylic acid; (5) derivatize the latter with pentafluorobenzyl bromide; (6) purify the diester product on a silica cartridge; and (7) detect this product by gas chromatography electron capture negative ion mass spectrometry. From the dose (1 microgram/mL) of B[a]P applied, five adducts in 10(7) normal nucleotides were found. Largely because steps 2-5 of the method take place sequentially in a single vial, the procedure is convenient and affords precise results. To demonstrate the potential of the method to detect KO2-susceptible polyaromatic hydrocarbon DNA adducts in general, including unknowns, it was also applied to picomole and femtomole amounts of a standard of chrysene-1,4-quinone using scanning and selected ion monitoring conditions, respectively, in the MS. Since standard products can be detected with selected ion monitoring at levels 10(4) below those encountered here (prior work), it should be possible in the future to extend the method to samples containing smaller amounts of such adducts.

Animals↗