MALDI ionization: the role of in-plume processes.
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Journal Article↗
Biomedical subjects
R Zenobi
Publications and source records attributed to R Zenobi.
Picogram quantitation of polycyclic aromatic hydrocarbons adsorbed on aerosol particles by two-step laser mass spectrometry.
Polycyclic aromatic hydrocarbons (PAHs) are emitted into the atmosphere mostly by anthropogenic combustion sources. Because of their carcinogenic and mutagenic properties, PAHs are often analyzed in air quality measurements. Atmospheric concentrations of PAHs, typically in the nanograms-per-cubic-meter range, require significant effort for sample collection and processing when conventional methods such as gas chromatography/mass spectrometry (GC/MS) or liquid chromatography/mass spectrometry are used. In contrast, two-step laser mass spectrometry (L2MS) is highly sensitive and selective for PAHs and requires almost no sample preparation. Here, we present for the first time a method based on L2MS to quantify PAHs adsorbed on aerosol particles collected on a filter. Linear ranges for quantitation were determined for five different PAHs in the mass range of 178-276 Da (i.e., phenanthrene, pyrene, chrysene, benzo[e]pyrene, benzo[ghi]perylene) covering more than 2 orders of magnitude with detection limits between 50 and 300 pg of a single PAH on a whole filter sample. A quantitative comparison with GC/MS was performed using model aerosols consisting of benzo[e]pyrene adsorbed on inorganic salt aerosol particles. On average, 25% less benzo[e]pyrene was determined with GC/MS than with L2MS, with a variability between the two methods of +/-68%. The general lower amount measured with GC/MS is attributed to losses during the sample preparation for the GC/MS measurements.
Journal Article↗
A mass spectrometry and electron paramagnetic resonance study of photochemical and thermal aging of triterpenoid varnishes.
Photochemical and thermal aging of triterpenoid dammar and mastic resins used as varnishes on paintings were studied using graphite-assisted laser desorption/ionization mass spectrometry. This extends an earlier study on similar materials (Zumbühl et al., Anal. Chem. 1998, 70, 707-715) that focused on photoaging. Progressive aging results in development of groups of signals spaced by 14 and 16 Da, indicating incorporation of oxygen as well as simultaneous loss of hydrogen. Oligomers up to tetramers are formed, while cleavage reactions lead to increased signal intensities in the mass ranges between the oligomers and below the monomers. No major differences were found between the mass spectra of samples aged in light or darkness, except that deterioration was faster in light. Electron paramagnetic resonance spectroscopy revealed similar and significant amounts of radicals in films of dammar stored either in light or in darkness. It is concluded that oxidative radical reactions also take place in darkness and that differences in light and dark aging pathways are minor, although rates may differ. These findings lead to a unified explanation for yellowing of natural resin varnishes, one of the major degenerative changes in the appearance of paintings. It is also shown that the commercially available, nominally fresh resins are already in an advanced stage of oxidation and degradation. Energy-rich substances are formed upon irradiation with sunlight and are believed to restart the autoxidative chain reactions, regardless of storage conditions. As a result, varnishes are oxidized quite quickly (months) even when kept in darkness.
Journal Article↗
Nanoscale atmospheric pressure laser ablation-mass spectrometry.
We describe an atmospheric pressure nanosampling interface for mass spectrometry based on near-field laser ablation. Pulsed laser radiation is delivered to the sample surface through a near-field optical probe, and the ablation plume is sampled through a capillary orifice and analyzed by standard MS methods. A spatial resolution of less than 200 nm and a sensitivity below 2 amol is demonstrated.
Journal Article↗
Deceleration of high-energy matrix-assisted laser desorption/ionization ions in an open cell for Fourier transform ion cyclotron resonance mass spectrometry.
A new method of ion deceleration in a Fourier transform ion cyclotron resonance (FTICR) open cell is described that improves the performance of FTICR-MS instruments equipped with an internal source for laser desorption/ionization. Ion deceleration occurs in the front trapping cylinder of an open cylindrical cell. Decelerating voltages up to 100 V can be applied for 10-500 micros to the front cylinder during ion introduction. The deceleration field is uniformly distributed along the cylinder length giving a "smooth" deceleration, which means that the deceleration is effective over a large time interval and a large m/z range. This results in improved trapping efficiency of high-energy ions. We demonstrate efficient trapping of high (m/z 66 kDa) mass ions and the possibility to reduce the width of the kinetic energy distribution of MALDI ions with this arrangement.
Journal Article↗
Protein structure information from mass spectrometry? Selective titration of arginine residues by sulfonates.
Noncovalently bound complexes between basic sites of peptides/proteins and sulfonates are studied using Matrix Assisted Laser Desorption/Ionization (MALDI) Mass Spectrometry. Reactive sulfonate dyes such as Cibacron Blue F3G-A are known to bind to protonated amino groups on the exterior of a protein. In this work, we examine a wide range of other sulfonates with distinctly simpler structure and more predictable reactivity. Naphthalene-sulfonic acid derivatives were found to bind to arginine only, as opposed to expected binding to all basic sites (Arg, Lys and His). Detailed control experiments were designed to unambigously confirm this selectivity and to rule out nonspecific adduct formation in the gas phase. The data show that the number of complex adducts found equals the number of accessible arginine sites on the surface of folded peptides and proteins, plus the N-terminus. Lys and His are not complexed nor are buried residues with hindered access. MALDI-MS can therefore provide fast information related to the exposed surface of these biomolecules. Additional titration experiments with 1-anilino-naphthalene-8-sulfonic acid (ANS) revealed that this fluorescent dye, which was often hypothesized to bind to so-called molten globule states of proteins, behaved exactly like all other naphthalene-sulfonic acids. ANS binding thus occurs largely through the sulfonate group.
Journal Article↗
Analysis of water contaminants and natural water samples using two-step laser mass spectrometry
The applicability of two-step laser mass spectrometry (L2MS) to the analysis of water contaminants and environmental water samples is demonstrated. First, the ionization characteristics of a selection of naphthyl and carbamate pesticides and of phenol were determined. The ion signal of all compounds increased with ionization laser pulse energy, within the investigated range (20-200 microJ). Ion yields relative to an internal standard, benz[alanthracene, reached 30% for naphthyl pesticides ionized at 225 nm and 2-8% at 266 nm. At 266 nm, similar relative ion yields were found for phenol. Carbamate pesticides showed lower relative ion yields at all wavelengths, by a factor of approximately 10-100, but higher relative ion yields, on the order of 1%, were obtained when using short (ps) laser pulses for ionization. These data allow one to estimate the detection limits of these analytes in a variety of matrixes once they are known for one of the compounds. Second, the quantitative analysis of carbaryl, phenol, and polycyclic aromatic hydrocarbons in rainwater is demonstrated. The aqueous samples were frozen to permit direct L2MS analysis of organic pollutants without tedious sample preparation. Detection limits were in the low-microgram per liter concentration range and recoveries of phenol from spiked rainwater samples were above 90%. The specific advantages are exemplified with the investigation of dynamic washout processes of atmospheric organic pollutants with a resolution of 0.01 mm of precipitation.
Journal Article↗
Scanning Near-Field Optical Microscopy and Spectroscopy as a Tool for Chemical Analysis.
Research into the nanometer-scale region is currently of relevance in many branches of modern science and engineering, such as in microelectronics, supramolecular chemistry, and in a biological context. A great deal of attention is given to the design of molecular devices, usually towards understanding the function of existing "molecular machines". Central to this task are powerful diagnostic tools capable of recording chemical information with spatial resolution in the nanometer range. While elemental analysis of surfaces with a lateral resolution of a few dozen nanometers is almost routine, analysis of molecular species with a resolution of <1 µm is very difficult. Scanning-tunneling and atomic-force microscopies usually do not give any chemical information. By combining scanning near-field optical microscopy (SNOM)-the "optical member" of the family of scanning-probe microscopies-with optical spectroscopy, it is possible to obtain molecular information from sample areas as little as 50 nm in diameter. In SNOM, a light source is scanned above the object of interest at a distance of a few nanometers. In the optical near field, the illuminated area is not subject to the Abbé diffraction limit, but merely by the size of the illuminating source. High quality SNOM probes can be reproducibly prepared by a chemical-etching method. These etched probes have an optical transmission up to 1000-fold higher than commercial (pulled) SNOM tips and can withstand higher laser power. This last advantage allows not only high resolution optical imaging, but also localized spectroscopic investigations of surfaces and even optical "nanosampling" by pulsed-laser ablation. The ablated material can be transported over a considerable distance, which opens the possibility for its subsequent analysis with a complementary, highly sensitive analytical method, such as mass spectrometry.
Journal Article↗
A MALDI sample preparation method suitable for insoluble polymers
Polyamides are insoluble or poorly soluble in common organic solvents, which makes normal sample preparation for matrix-assisted laser desorption/ionization (MALDI) mass spectrometry very difficult. An new analytical protocol for MALDI analysis of polyamides or other insoluble samples is described. It consists of pressing a pellet from a solid mixture of the polymer and a matrix, both in the form of finely ground powder. This sample preparation is compared with the common dried droplet sample preparation method and found to perform much better, both in terms of robustness against variation of experimental parameters and high-mass capability.
Journal Article↗
Internal energies of analyte ions generated from different matrix-assisted laser desorption/ionization matrices
A transfer of energy into the internal modes of the matrix and analyte is expected to occur during matrix-assisted laser desorption/ioniziation (MALDI) processes. Both the physical and thermochemical properties of the MALDI matrix used can influence the ion internal energy and analyte ion fragmentation. Here we report the effect of several MALDI matrices on the relative internal energy of the 2'-deoxyadenylyl-(3',5')-2'-deoxyguanosine (AG) anion. Relative internal energies were probed by low-energy collision-induced dissociation in a Fourier transform ion cyclotron resonance mass spectrometer. Sublimation temperatures of the matrices under study were also determined and found to lie between 409 and 455 K. Analyte ion internal and initial kinetic energies did not correlate with matrix sublimation temperatures. In contrast, a strong correlation between the relative internal energy of the analyte anions and the gas-phase basicity of the matrix anions was found. These results suggest that gas-phase proton transfer reactions play an important role in MALDI analyte ion formation and influence their internal energy and fragmentation behavior. Copyright 2000 John Wiley & Sons, Ltd.
Journal Article↗
Secondary ion-molecule reactions in matrix-assisted laser desorption/ionization
Ion-molecule charge- and proton-transfer reactions in the desorption plume are considered for the case of matrix-assisted laser desorption/ionization (MALDI) with ultraviolet laser excitation, and it is proposed that they are major determinants of the observed mass spectrum. Specific MALDI phenomena which are discussed include the dominance of singly charged ions and analyte-matrix or analyte-analyte signal suppression. Should any be formed, highly charged products can be reduced by reaction with neutral matrix, yet singly charged ions cannot generally be neutralized in the same manner. Ion suppression effects can also be explained by similar reactions, which in some cases involve interconversion of dissimilar ion types. The plume is proposed often to be more under thermodynamic rather than kinetic control owing to these secondary reactions. UV/MALDI mass spectra should therefore be largely predictable, given sufficient thermodynamic information, and appropriate experimental conditions of sufficient analyte and plume density. Copyright 2000 John Wiley & Sons, Ltd.
Journal Article↗
In-situ monitoring of protein labeling reactions by matrix-assisted laser desorption/ionization mass spectrometry.
Taking the labeling reaction of horse heart cytochrome c or ubiquitin with biotinamidocaproate N-hydroxysucchinimide ester (biotin-NHS) as test cases, this report demonstrates the usefulness of matrix-assisted laser desorption/ionization (MALDI) mass spectrometry for in-situ monitoring of the labeling process and for determining the composition of the labeled products without the need for prior separation. The effects of pH and starting materials concentration on the labeling process were investigated in detail. Our MALDI MS results show that: (1) labeled products are always mixtures of different conjugates, which may explain peak broadening found in chromatographic studies of labeling reactions; (2) the higher conjugate fractions become more prominent as the labeling reaction proceeds, with a concomitant exponential decline of the lower conjugate fractions; (3) biotin-NHS can be incorporated into peptides and protein in a stepwise and controlled manner simply by adjusting the molar ratio of the starting materials.
Aminocaproates↗
The immunosuppressive cytokines influence the fetal survival in patients with pregnancy-induced hypertension.
PROBLEM: The present study examines the hypothesis that the elevated levels of transforming growth factor (TGF)-beta1 and interleukin (IL)-10 would be protective for the fetus survival during pregnancy-induced hypertension (PIH). Moreover, we evaluate the IL-12 and IL-15 serum concentrations and their relationships with PIH. METHOD OF STUDY: Serum samples were obtained before the onset of labor from control and PIH groups. Cytokine concentrations were determined by Enzyme-Linked Immunoadsorbent Assay. RESULTS: Our data show that PIH women have significantly higher TGF-beta1 and IL-10 concentrations with respect to control groups (P = 0.0001). Similarly, macrophages from the PIH placentas produce in vitro more elevated TGF-beta1 and IL-10 levels compared to normal pregnant ones (P = 0.02), also in the absence of LPS stimulation. IL-12 and IL-15 serum concentrations were not detectable in all pregnant groups. CONCLUSION: We have found that PIH women have elevated concentrations of anti-inflammatory/immunosuppressive cytokines, suggesting their important role in fetal allograft protection during the normal and pathological pregnancy.
Adult↗
Optimization of an ion-to-photon detector for large molecules in mass spectrometry.
Ion packets can be detected in time-of-flight mass spectrometry by collecting the photons that are produced during the impact of the packets with a scintillator. The photon yield is a function of the ion energy. It was found that post-acceleration of the particles in front of the scintillator was an efficient way of increasing signal intensities. For the same total ion energy, the intensities were larger with post-acceleration than when only increasing the initial ion kinetic energy. A venetian blind dynode, converting the primary ion beam into electrons/secondary ions, was also introduced. Positive or negative secondary particles produced on the dynode surface could be accelerated to the scintillator. Electrons were found to give the highest signals. Intensities similar to those measured with microchannel plates were found. The linearity and onset of saturation of the microchannel plates and the ion-to-photon detector were compared. At optimum operating conditions, the ion-to-photon detector gave around 10 times higher signals than the microchannel plates for heavy ions (150 kDa), with similar mass resolution. Copyright 1999 John Wiley & Sons, Ltd.
Journal Article↗
Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for identifying the composition of labeled proteins.
Labeled proteins are extensively used in molecular biology and environmental science. The determination of the composition and label ratio is very important for monitoring the efficiency of their separation and purification. In this paper a novel method based on matrix-assisted laser desorption/ionization (MALDI) time-of-flight mass spectrometry was developed for this purpose. The results obtained for three commercial labeled proteins showed that they are mixtures of different conjugates. In some cases, the label ratio obtained by UV spectrometry and MALDI mass spectrometry was strikingly different. For fluorescent labels such as fluorescein isothiocyanate, MALDI mass spectrometry determines the number of covalently bound labels, whereas UV absorption yields both bound and adsorbed labels. For biotinylated proteins, label ratios obtained by the 4-hydroxyazabenzene-2'-carboxylic acid (HABA)-avidin method were found to be much smaller those determined by MALDI mass spectrometry. The HABA-avidin method may therefore not be suitable for the determination of biotin label ratios.
Biotin↗
Matrix-assisted laser desorption/ionization mass spectra reflect solution-phase zinc finger peptide complexation.
The complexation between an 18-residue zinc finger peptide of CCHC type (CCHC = Cys-X2-Cys-X4-His-X4-Cys, X = variable amino acid) from the gag protein p55 of human immunodeficiency virus type 1 (HIV-1) and various transition metal ions was studied by means of circular dichroism spectroscopy and matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS). A correlation between the complexation behavior in solution and in MALDI-MS could be established. It was shown that MALDI-MS is a fast method suitable for studying metal binding properties of zinc finger complexes.
Amino Acid Sequence↗
MALDI mass spectrometry of dye-peptide and dye-protein complexes.
Immobilized sulfonate dyes are widely used for protein separation and purification, but the mode of interaction between the dye molecules and the proteins is largely unknown. Here we show that specific noncovalent dye-protein and dye-peptide complexes can be observed using MALDI mass spectrometry. We prove that the interaction is prodominantly electrostatic and that it involves protonated sites of the peptides and proteins, including the NH2 terminus, and deprotonated SO3 groups of the dyes. Furthermore, we show that MALDI-MS of such complexes with a nonacidic matrix, p-nitro-aniline, can be used to determine the number of accessible basic sites of a protein or peptide in its folded structure. Our results are in good agreement with measurements of the same property done with electrospray ionization.
Adrenocorticotropic Hormone↗