PubMed Health⌕ Search

Biomedical subjects

Raffaele Guido Della Valle

Publications and source records attributed to Raffaele Guido Della Valle.

3 recordsLinked to original sources

Inherent structures of crystalline tetracene.

We have systematically sampled the potential energy surface of crystalline tetracene to identify its local minima. These minima represent all possible stable configurations and constitute the "inherent structures" of the system. The crystal is described in terms of rigid molecules with Coulombic and atom-atom interactions. Hundreds of distinct minima are identified, mostly belonging to the space groups P (triclinic) and P2(1)/c (monoclinic), with a variety of structural arrangements. The deepest minimum corresponds to the high temperature-low pressure polymorph. This is the only polymorph with a completely described X-ray structure, which is satisfactorily described by the calculations. The next deep minimum is likely to correspond to the low temperature-high pressure polymorph, which has been experimentally identified but not yet fully described.

Journal Article↗

MD simulation of the Na+-phenylalanine complex in water: competition between cation-pi interaction and aqueous solvation.

The competition between cation-pi interaction and aqueous solvation for the Na+ ion has been investigated by molecular dynamics simulations, using the phenylalanine amino acid as the test pi system. Starting from one of the best standard force fields, we have developed new parameters that significantly improve the agreement with experimental and high quality quantum mechanical results for the complexes of Na+ with phenylalanine, benzene, and water. The modified force field performs very well in forecasting energy and geometry of cation coordination for the complexes. Next, analysis of MD trajectories and steered MD simulations indicate that the Na+-phenylalanine complex survives for a significant time in aqueous solution and that the free energy barrier opposing dissociation of the complex is sizable. Finally, we analyze the role of different intermolecular interactions in determining the preference for cation-pi bonding with respect to aqueous solvation. We thus confirm that the Na+-phenylalanine stabilization energy may overcome the interactions with water.

Journal Article↗

Probing pentacene polymorphs by lattice dynamics calculations.

We have performed a lattice dynamics calculation to compute the "inherent structures" of minimum potential energy for pentacene, starting from available X-ray data. The calculation shows that two distinct bulk crystalline phases of pentacene exist, with very subtle structural differences but clearly different phonon spectra. The method of crystal growth (from solution or vapor) is not the determining factor for obtaining either structure.

Journal Article↗