Biomedical subjects

Rajamani Krishna

Publications and source records attributed to Rajamani Krishna.

5 recordsLinked to original sources

PubMed2005

Quantification of binary diffusion in protein crystals.

The use of confocal laser scanning microscopy for visualization and quantification of binary diffusion within anisotropic porous material is described here for the first time. The dynamics of adsorption profiles of dianionic fluorescein, zwitterionic rhodamine B, and their mixture in the cationic native orthorhombic lysozyme crystal were subsequently analyzed. All data could be described by a classical pore diffusion model. There was no change in the adsorption characteristics, but diffusion decreased with the introduction of a second solute in the solution. It was found that diffusion is determined by the combination of steric and electrostatic interactions,while adsorption is dependent on electrostatic and hydrophobic interactions. Thus, it was established that the outcome of binary transport depends on the solute, protein, and crystal characteristics.

Adsorption↗

PubMed2005

Adsorption of xanthene dyes by lysozyme crystals.

Adsorption characteristics of cross-linked lysozyme crystals of different morphologies (tetragonal, orthorhombic, triclinic and monoclinic) were examined using four anionic dyes (fluorescein, eosin, erythrosin, and rose bengal), one zwitterionic dye (rhodamine B), and one cationic dye (rhodamine 6G). The adsorption isotherms were of the Langmuir type for all examined systems with the exception of rhodamine B adsorption by monoclinic crystals. The weakest adsorption was observed for the cationic dye, rhodamine B, whereas dianionic dyes, eosin, rose bengal, and erythrosin were strongly adsorbed on the protein surface. The adsorption capacities of the crystals for the dyes were found to depend on both charge and hydrophobicity of the dye, reflecting the heterogeneous character of the lysozyme pore surface. The adsorption affinity of the crystals for the dyes was a function of the dyes' hydrophobicity. Furthermore, the crystal morphology was identified as an additional factor determining capacity and affinity for dye adsorption. Differences between crystals prepared in the presence of the same precipitant were lower than between morphologies prepared with different precipitants.

Adsorption↗

PubMed2005

Relation between pore sizes of protein crystals and anisotropic solute diffusivities.

The diffusion of a solute, fluorescein, into lysozyme protein crystals with different pore structures was investigated. To determine the diffusion coefficients, three-dimensional solute concentration fields acquired by confocal laser scanning microscopy (CLSM) during diffusion into the crystals were compared with the output of a time-dependent 3-D diffusion model. The diffusion process was found to be anisotropic, and the degree of anisotropy increased in the order: triclinic, tetragonal and orthorhombic crystal morphology. A linear correlation between the pore diffusion coefficients and the pore sizes was established. The maximum size of the solute, deduced from the established correlation of diffusion coefficients and pore size, was 0.73 +/- 0.06 nm, which was in the range of the average diameter of fluorescein (0.69 +/- 0.02 nm). This proves that size exclusion is the key mechanism for solute diffusion in protein crystals. Hence, the origin of solute diffusion anisotropy can be found in the packing of the protein molecules in the crystals, which determines the crystal pore organization.

Anisotropy↗

PubMed2004

Understanding the role of sodium during adsorption: a force field for alkanes in sodium-exchanged faujasites.

We have developed a united atom force field able to accurately describe the adsorption properties of linear alkanes in the sodium form of FAU-type zeolites. This force field successfully reproduces experimental adsorption properties of n-alkanes over a wide range of sodium cation densities, temperatures, and pressures. The force field reproduces the sodium positions in dehydrated FAU-type zeolites known from crystallography, and it predicts how the sodium cations redistribute when n-alkanes adsorb. The cations in the sodalite cages are significantly more sensitive to the n-alkane loading than those in the supercages. We provide a simple expression that adequately describes the n-alkane Henry coefficient and adsorption enthalpy as a function of sodium density and temperature at low coverage. This expression affords an adequate substitute for complex configurational-bias Monte Carlo simulations. The applicability of the force field is by no means limited to low pressure and pure adsorbates, for it also successfully reproduces the adsorption from binary mixtures at high pressure.

Journal Article↗

PubMed2002

Entropy effects during sorption of alkanes in zeolites.

Recent developments in Configurational-Bias Monte Carlo (CBMC) techniques allow the accurate calculation of the sorption isotherms for alkanes, and their mixtures, in various zeolites. The CBMC simulations give new insights into subtle entropy effects affecting mixture adsorption. Three types of entropy effects can be distinguished. (1) Size entropy effects favour the component with the smaller number of C atoms because the smaller molecule finds it easier to fill in the 'gaps' within the zeolite matrix at high molecular loadings. (2) Configurational entropy effects come into play for mixtures of alkanes that differ in the degree of branching. For a mixture of linear and branched alkanes with the same number of C atoms, configurational entropy effects favour the linear isomer because such molecules 'pack' more efficiently within, say, the intersecting channel topology of MFI zeolite. (3) Length entropy effects comes into force for sorption of linear and branched alkanes within the cylindrical channels of say AFI and MOR zeolites; here the double branched alkane has the shortest length and can be packed more efficiently within the channels. We demonstrate that CBMC simulations allow the efficient screening of zeolite structures for a given separation duty and aid the development of novel separation processes exploiting entropy effects.

Journal Article↗