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Biomedical subjects

Robert Bau

Publications and source records attributed to Robert Bau.

At least 19 recordsLinked to original sources

Syntheses and structures of asymmetric Bis(silyl) niobocene hydrides.

This paper deals with the preparation and structural investigation of asymmetric bis(silyl) niobocene hydrides, Cp2Nb(SiHMe2)(H)(SiXMe2) (2; X = F (a), Cl (b), Br (c), I (d)) and Cp2Nb(SiXMe2)(H)(SiYMe2) (X,Y= F-I; X not equal Y). Complexes 2a-d were prepared by selective electrophilic activation of the Si-H bond in Cp2Nb(SiHMe2)2(H). The Cp2Nb(SiXMe2)(H)(SiYMe2) complexes were prepared by electrophilic activation of the Si-H bond in 2a-d and, in some cases, by electrophilic exchange of the X halides in Cp2Nb(SiXMe2)2(H) (1) for other halides, Y. The structures of complexes 2b and 2c have been studied by X-ray and neutron diffraction (ND). The ND results unequivocally established that the hydride ligand in 2c is shifted toward the SiBrMe2 ligand and that in 2b is positioned symmetrically between two nonequivalent silyl groups, with the H...SiClMe2 distance being shorter because of the shorter Nb-SiClMe2 bond length. Analysis of the X-ray structures of complexes 2a-d and complexes Cp2Nb(SiXMe2)(H)(SiYMe2) shows that the largest structural distortions are observed for the silyl groups substituted by heavy halogen atoms. These trends are rationalized in terms of stronger interligand hypervalent interactions (IHI) Nb-H...Si-X for heavy atoms X from Group 7.

Journal Article↗

Intramolecular arene epoxidation by phosphadioxiranes.

Singlet oxygen reacts with binaphthyl phosphine derivatives such as 1,1'-binaphthyl di-tert-butyl phosphine to form the corresponding binaphthyl-2-oxide phosphine oxides. This new intramolecular arene epoxidation reaction proceeds with complete retention of stereochemistry. The binaphthyl-2-oxide di-tert-butyl phosphine oxide undergoes a slow "NIH-rearrangement" to form the corresponding hydroxylated product. A transient phosphadioxirane intermediate has been directly observed by low-temperature NMR. Kinetic analyses show that all of the phosphadioxirane intermediate is converted to product. [reaction: see text]

Catalysis↗

Are the NF4+ cations in NF4BF4 really nontetrahedral?

The crystal structure of NF4BF4 has been reexamined. The low-temperature X-ray structure and solid-state 19F MAS NMR spectra are in agreement with the conclusions reached from the vibrational spectra, that solid NF4+ salts contain only tetrahedral NF4+ cations. The alleged observation of two kind of nontetrahedral NF4+ cations in several previous crystal structures is attributed to incorrectly solved structures and, possibly, problems caused by disorder or twinning. It is further evidence for the dangers of over-reliance on crystal structures. Flawed crystal structures can give rise to either bad or unwarranted theory.

Journal Article↗

Cationic bis-cyclometalated iridium(III) diimine complexes and their use in efficient blue, green, and red electroluminescent devices.

A series of cationic Ir(III) complexes with the general formula (C/N)2Ir(N/N)(+)PF6- featuring bis-cyclometalated 1-phenylpyrazolyl-N,C2' (C/N) and neutral diimine (N/N, e.g., 2,2'-bipyridyl) ligands were synthesized and their electrochemical, photophysical, and electroluminescent properties studied. Density functional theory calculations indicate that the highest occupied molecular orbital of the compounds is comprised of a mixture of Ir d and phenylpyrazolyl-based orbitals, while the lowest unoccupied molecular orbital has predominantly diimine character. The oxidation and reduction potentials of the complexes can be independently varied by systematic modification of either the C/N or N/N ligands with donor or acceptor substituents. The electrochemical redox gaps (E(ox)-E(red)) were adjusted to span a range between 2.39 and 3.08 V. All of the compounds have intense absorption bands in the UV region assigned to 1(pi-pi*) transitions and weaker charge-transfer (CT) transitions that extend to the visible region. The complexes display intense luminescence both in fluid solution and as neat solids at 298 K that is assigned to emission from a triplet metal-ligand-to-ligand CT (3MLLCT) excited state. The energy of the 3MLLCT state varies in nearly direct proportion to the size of the electrochemical redox gap, which leads to emission colors that vary from red to blue. Three of the (C/N)2Ir(N/N)(+)PF6- complexes were used as active materials in single-layer light-emitting electrochemical cells (LECs). Single-layer electroluminescent devices were fabricated by spin-coating the Ir complexes onto an ITO-PEDOT/PSS substrate followed by deposition of aluminum contacts onto the organic film. Devices were prepared that give blue, green, and red electroluminescence spectra (lambda(max) = 492, 542, and 635 nm, respectively), which are nearly identical with the photoluminescence spectra of thin films of the same materials. The single-layer LECs give peak external quantum efficiencies of 4.7, 6.9, and 7.4% for the blue, green, and red emissive devices, respectively.

Journal Article↗

Blue and near-UV phosphorescence from iridium complexes with cyclometalated pyrazolyl or N-heterocyclic carbene ligands.

Two approaches are reported to achieve efficient blue to near-UV emission from triscyclometalated iridium(III) materials related to the previously reported complex, fac-Ir(ppz)(3) (ppz = 1-phenylpyrazolyl-N,C(2)'). The first involves replacement of the phenyl group of the ppz ligand with a 9,9-dimethyl-2-fluorenyl group, i.e., fac-tris(1-[(9,9-dimethyl-2-fluorenyl)]pyrazolyl-N,C(2)')iridium(III), abbreviated as fac-Ir(flz)(3). Crystallographic analysis reveals that both fac-Ir(flz)(3) and fac-Ir(ppz)(3) have a similar coordination environment around the Ir center. The absorption and emission spectra of fac-Ir(flz)(3) are red shifted from those of fac-Ir(ppz)(3). The fac-Ir(flz)(3) complex gives blue photoluminescence (PL) with a high efficiency (lambda(max) = 480 nm, phi(PL) = 0.38) at room temperature. The lifetime and quantum efficiency were used to determine the radiative and nonradiative rates (1.0 x 10(4) and 2.0 x 10(4) s(-1), respectively). The second approach utilizes N-heterocyclic carbene (NHC) ligands to form triscyclometalated Ir complexes. Complexes with two different NHC ligands, i.e., iridium tris(1-phenyl-3-methylimidazolin-2-ylidene-C,C(2)'), abbreviated as Ir(pmi)(3), and iridium tris(1-phenyl-3-methylbenzimidazolin-2-ylidene-C,C(2)'), abbreviated as Ir(pmb)(3), were both isolated as facial and meridianal isomers. Comparison of the crystallographic structures of the fac- and mer-isomers of Ir(pmb)(3) with the corresponding Ir(ppz)(3) isomers indicates that the imidazolyl-carbene ligand has a stronger trans influence than pyrazolyl and, thus, imparts a greater ligand field strength. Both fac-Ir(pmi)(3) and fac-Ir(pmb)(3) complexes display strong metal-to-ligand-charge-transfer absorption transitions in the UV (lambda = 270-350 nm) and phosphoresce in the near-UV region (E(0)(-)(0) = 380 nm) at room temperature with phi(PL) values of 0.02 and 0.04, respectively. The radiative decay rates for fac-Ir(pmi)(3) and fac-Ir(pmb)(3) (5 x 10(4) s(-1) and 18 x 10(4) s(-1), respectively) are somewhat higher than that of fac-Ir(flz)(3), but the nonradiative rates are two orders of magnitude faster (i.e., (2-4) x 10(6) s(-1)).

Journal Article↗

Synthesis and X-ray and neutron structures of Zr{(mu-H)2BC8H14}4.

The complex Zr(9-BBN)4 [9-BBN = (mu-H)2BC8H14] has been synthesized via the reaction of K(9-BBN) with ZrCl4 in diethyl ether. The structure of the title compound has been determined by X-ray and neutron single-crystal diffraction techniques. Each 9-BBN ligand is coordinated to the Zr atom via two B-H-Zr bridges, and these metal-ligand bonding interactions are further augmented by three prominent C-H...Zr agostic interactions. Average molecular parameters derived from the neutron analysis: Zr-H = 2.051(8) A, B-H = 1.286(7) A, Zr...B = 2.409(6) A, Zr-H-B = 87.7(4) degrees , H-Zr-H = 58.9(3) degrees . The Zr...H distances corresponding to the three C-H...Zr agostic interactions are 2.424(7), 2.663(8), and 2.551(7) A. The fourth potential C-H...Zr interaction has a Zr...H distance [3.146(7) A] that is too long to be considered in the agostic range. Single-crystal X-ray diffraction data were collected on an Enraf-Nonius Kappa CCD diffraction system, and neutron diffraction data were collected on the quasi-Laue diffractometer VIVALDI at the Institut Laue-Langevin; the final agreement factor for the neutron analysis is 6.52% for 2557 reflections with I > 2sigma(I).

Journal Article↗

Synthetic control of excited-state properties in cyclometalated Ir(III) complexes using ancillary ligands.

The synthesis and photophysical characterization of a series of (N,C(2')-(2-para-tolylpyridyl))2 Ir(LL') [(tpy)2 Ir(LL')] (LL' = 2,4-pentanedionato (acac), bis(pyrazolyl)borate ligands and their analogues, diphosphine chelates and tert-butylisocyanide (CN-t-Bu)) are reported. A smaller series of [(dfppy)2 Ir(LL')] (dfppy = N,C(2')-2-(4',6'-difluorophenyl)pyridyl) complexes were also examined along with two previously reported compounds, (ppy)2 Ir(CN)2- and (ppy)2 Ir(NCS)2- (ppy = N,C(2')-2-phenylpyridyl). The (tpy)2 Ir(PPh2CH2)2 BPh2 and [(tpy)2 Ir(CN-t-Bu)2](CF3SO3) complexes have been structurally characterized by X-ray crystallography. The Ir-C(aryl) bond lengths in (tpy)2 Ir(CN-t-Bu)2+ (2.047(5) and 2.072(5) A) and (tpy)2 Ir(PPh2CH2)2 BPh2 (2.047(9) and 2.057(9) A) are longer than their counterparts in (tpy)2 Ir(acac) (1.982(6) and 1.985(7) A). Density functional theory calculations carried out on (ppy)2 Ir(CN-Me)2+ show that the highest occupied molecular orbital (HOMO) consists of a mixture of phenyl-pi and Ir-d orbitals, while the lowest unoccupied molecular orbital is localized primarily on the pyridyl-pi orbitals. Electrochemical analysis of the (tpy)2 Ir(LL') complexes shows that the reduction potentials are largely unaffected by variation in the ancillary ligand, whereas the oxidation potentials vary over a much wider range (as much as 400 mV between two different LL' ligands). Spectroscopic analysis of the cyclometalated Ir complexes reveals that the lowest energy excited state (T1) is a triplet ligand-centered state (3LC) on the cyclometalating ligand admixed with 1MLCT (MLCT = metal-to-ligand charge-transfer) character. The different ancillary ligands alter the 1MLCT state energy mainly by changing the HOMO energy. Destabilization of the 1MLCT state results in less 1MLCT character mixed into the T1 state, which in turn leads to an increase in the emission energy. The increase in emission energy leads to a linear decrease in ln(k(nr)) (k(nr) = nonradiative decay rate). Decreased 1MLCT character in the T1 state also increases the Huang-Rhys factors in the emission spectra, decreases the extinction coefficient of the T1 transition, and consequently decreases the radiative decay rates (k(r)). Overall, the luminescence quantum yields decline with increasing emission energies. A linear dependence of the radiative decay rate (k(r)) or extinction coefficient (epsilon) on (1/deltaE)2 has been demonstrated, where deltaE is the energy difference between the 1MLCT and 3LC transitions. A value of 200 cm(-1) for the spin-orbital coupling matrix element 3LC absolute value(H(SO)) 1MLCT of the (tpy)2 Ir(LL') complexes can be deduced from this linear relationship. The (fppy)2 Ir(LL') complexes with corresponding ancillary ligands display similar trends in excited-state properties.

Journal Article↗

Synthetic control of Pt...Pt separation and photophysics of binuclear platinum complexes.

A new series of luminescent mu-pyrazolate-bridged cyclometalated platinum binuclear complexes having the formula CwedgeNPt(mu-pz')2PtCwedgeN (CwedgeN = 2-(2,4-difluorophenyl)pyridyl, pz' = pyrazolate for 1, 3,5-dimethylpyrazolate for 2, 3-methyl-5-tert-butylpyrazolate for 3, and 3,5-bis(tert-butyl)pyrazolate for 4) have been synthesized and characterized. The two Pt(CwedgeN) moieties are bridged by two mu-pyrazolate ligands in an exo-bidentate fashion. A mononuclear complex with an isolated Pt center, CwedgeNPt(pz)2BEt2, 5, is also described. The X-ray crystal structures of 1-4 show the following Pt-Pt spacings: 1 = 3.3763(7) A, 2 = 3.1914(9) A, 3 = 3.0457(7) A, and 4 = 2.8343(6) A. At 77 K, the emission energy of the complexes varies from blue (for 1, 2, and 5) to green (for 3) to red (for 4). The changes in the photophysical properties of the binuclear complexes can be correlated with the decreasing Pt-Pt distance; the emissive state changes from a mixed ligand center triplet/metal-to-ligand charge transfer excited state (for 1 and 2) to a lower-energy, Pt-Pt metal-metal-to-ligand charge transfer state (for 3 and 4).

Journal Article↗

Neutron crystallographic study on rubredoxin from Pyrococcus furiosus by BIX-3, a single-crystal diffractometer for biomacromolecules.

The structure of a partially deuterated rubredoxin from the hyperthermophilic archaeon Pyrococcus furiosus, an organism that grows optimally at 100 degrees C, was determined by using the neutron single-crystal diffractometer dedicated for biological macromolecules (BIX-3) at the JRR-3M reactor of the Japan Atomic Energy Research Institute. Data were collected at room temperature up to a resolution of 1.5 A, and the completeness factor of the data set was 81.9%. The model contains 306 H and 50 D atoms. A total of 37 hydration water molecules were identified, with 15 having all three atoms fully located and the remaining D2O molecules partially defined. The model has been refined to final agreement factors of R = 18.6% and Rfree = 21.7%. Several orientations of the O-D bonds of side chains, whose assignments from x-ray data were previously ambiguous, were clearly visible in the neutron structure. Although most backbone N-H bonds had undergone some degree of H/D exchange throughout the rubredoxin molecule, 5 H atom positions still had distinctly negative (H) peaks. The neutron Fourier maps clearly showed the details of an extensive set of H bonds involving the ND3+ terminus that may contribute to the unusual thermostability of this molecule.

Deuterium Exchange Measurement↗

A neutron crystallographic analysis of a rubredoxin mutant at 1.6 A resolution.

A neutron diffraction study has been carried out at 1.6 A resolution on a mutant rubredoxin from Pyrococcus furiosus using the BIX-3 single-crystal diffractometer at the JRR-3 reactor of the Japan Atomic Energy Research Institute. In order to study the unusual thermostability of rubredoxin from P. furiosus (an organism that grows optimally at 373 K), the hydrogen-bonding patterns were compared between the wild-type protein and a 'triple-mutant' variant. In this mutant protein, three residues were changed (Trp3-->Tyr3, Ile23-->Val23, Leu32-->Ile32) so that they are identical to those in a mesophilic rubredoxin from Clostridium pasteurianum. In the present study, some minor changes were found between the wild-type and mutant proteins in the hydrogen-bonding patterns of the Trp3/Tyr3 region. In this investigation, the H/D-exchange ratios in the protein were also studied. Because the target protein was soaked in D2O during the crystallization procedure, most of the N-H and O-H bonds have become deuterated, while essentially all of the C-H bonds have not. In particular, the H/D-exchange pattern of the N-H amide bonds of the protein backbone is of interest because it may contain some indirect information about the mechanism of unfolding of this small protein. The results are in broad agreement with those from solution NMR studies, which suggest that the backbone amide bonds near the four Cys residues of the FeS4 redox center are most resistant to H/D exchange. Finally, the detailed geometries of the water molecules of hydration around the rubredoxin molecule are also reported. The 1.6 A resolution of the present neutron structure determination has revealed a more detailed picture than previously available of some portions of the water structure, including ordered and disordered O-D bonds. Crystallographic details: space group P2(1)2(1)2(1) (orthorhombic), unit-cell parameters a = 34.48, b = 35.70, c = 43.16 A; final agreement factors R = 0.196 and Rfree = 0.230 for 19,384 observed and 6548 unique neutron reflections collected at room temperature; crystal size 4 mm3; a total of 423 non-H atoms, 290 H atoms and 88 D atoms were located in this study.

Amino Acid Sequence↗

Organometallic complexes as hole-transporting materials in organic light-emitting diodes.

The use of metal complexes fac-tris(1-phenylpyrazolato-N,C(2)('))cobalt(III) [fac-Co(ppz)(3)], fac-tris(2-phenylpyridinato-N,C(2)(') cobalt(III) [fac-Co(ppy)(3)], and [tris[2-((pyrrole-2-ylmethylidene)amino)ethyl]amine]gallium(III) [Ga(pma)] as materials for hole-transporting layers (HTL) in organic light-emitting diodes (OLEDs) is reported. Co(ppz)(3) and Co(ppy)(3) were prepared by following literature procedures and isolated as mixtures of facial (fac) and meridional (mer) isomers. The more stable fac isomers were separated from the unstable mer forms via column chromatography and thermal gradient sublimation. Crystals of fac-Co(ppz)(3) are monoclinic, space group P2(1)/c, with a = 13.6121(12) A, b = 15.5600(12) A, c = 22.9603(17) A, beta = 100.5 degrees, V = 4781.3(7) A(3), and Z = 8. [Tris[2-((pyrrol-2-ylmethylidene)amino)ethyl]amine]gallium [Ga(pma)] was prepared by the reaction of gallium(III) nitrate with the pmaH(3) ligand precursor in methanol. Ga(pma) crystallizes in the cubic space group I3d with cell parameters a = 20.2377(4) A, b = 20.2377(4) A, c = 20.2377(4) A, beta = 90.0 degrees, V = 8288.6(3) A(3), and Z = 16. These cobalt and gallium complexes are pale colored to colorless solids, with optical energy gaps ranging 2.6-3.36 eV. A two-layer HTL/ETL (ETL = electron-transporting layer) device structure using fac-Co(ppz)(3) and fac-Co(ppy)(3) as the HTL does not give efficient electroluminescence. However, the introduction of a thin layer of a hole-transporting material (N,N'-bis(1-naphthyl)-N,N'-diphenylbenzidine, NPD) as an energy "stair-step" and electron/exciton-blocker dramatically improves the device performance. Both fac-Co(ppz)(3) and fac-Co(ppy)(3) devices give external quantum efficiencies higher than 1.0%, with brightness 5000 and 7000 Cd/m(2) at 10 V, respectively. Ga(pma) also functions as an efficient interface layer, giving device performances very similar to those of analogous devices using NPD as the interface layer. Stability tests have been carried out for Co(ppz)(3)/NPD/Alq(3) and Co(ppy)(3)/NPD/Alq(3) devices. While fac-Co(ppy)(3) gave stable OLEDs, the fac-Co(ppz)(3)-based devices had very short lifetimes. On the basis of the experimental results of chemical oxidation of fac-Co(ppz)(3), the major cause for the fast decay of the fac-Co(ppz)(3) device is proposed to be the decomposition of fac-Co(ppz)(3)(+) in the HTL layer during the device operation.

Journal Article↗

Neutron diffraction study of [H(4)Co(4)(C(5)Me(4)Et)(4)], a tetrahedral metal cluster complex with four face-bridging hydride ligands.

A single-crystal neutron diffraction analysis of the cluster complex [H(4)Co(4)(C(5)Me(4)Et)(4)] was carried out on the new quasi-Laue diffractometer VIVALDI at the Institut Laue-Langevin. The structure consists of four face-bridging hydrides attached to a tetrahedral cobalt metal core. Average distances and angles in the core of the molecule are as follows: Co-Co = 2.571(8), Co-C = 2.158(6), Co-H = 1.749(7), H.H = 2.366(9) A; Co-H-Co = 94.6(3), H-Co-H = 85.1(3) degrees. The hydride ligands are located off the Co-Co-Co planes by an average distance of 0.923(8) A. It is suggested that the dimensions of the HCo(3) fragments found in this molecule provide reasonable estimates for analogous distances and angles associated with chemisorbed H atoms situated on the 3-fold hollows of a cobalt surface. Crystallographic details: space group P2(1)/a (monoclinic); a = 21.979(2), b = 10.924(1), c = 34.406(2) A; beta = 90.81(1) degrees; Z = 8. Final agreement factor: R(F) = 0.099 for 3779 reflections [I > 2sigma(I)] collected at 20 K.

Journal Article↗

W3Y single mutant of rubredoxin from Pyrococcus furiosus: a preliminary time-of-flight neutron study.

Rubredoxin from the hyperthermophilic archaeon Pyrococcus furiosus maintains its native structure at high temperatures (373 K). In order to investigate the role of hydrogen bonding, hydration and chain dynamics in this thermostability, wavelength-resolved Laue neutron diffraction data have been collected from the W3Y single mutant (Trp3-->Tyr3) on the spallation neutron protein crystallography station (PCS) at Los Alamos Neutron Science Center. Data were measured at room temperature from nine crystal settings, each of approximately 12 h duration. The total data-measurement period was less than 5 d from a single crystal that had undergone H(2)O/D(2)O exchange. The nominal resolution of the data is 2.1 A.

Crystallization↗

Synthesis and structure of a water-soluble hexanuclear silver(I) nicotinate cluster comprised of a "cyclohexane-chair"-type of framework, showing effective antibacterial and antifungal activities: use of "sparse matrix" techniques for growing crystals of water-soluble inorganic complexes.

The synthesis of a water-soluble anionic silver 2-mercaptonicotinate complex having effective antibacterial and antifungal properties is described. Its structure has been confirmed to be a hexameric cluster by an X-ray diffraction analysis of a mixed Na(+)/Tris(+) salt (Tris(+) = tris(hydroxymethyl)methylammonium cation). The [Ag(mna)](6)(6-) cluster has a Ag(6)S(6) core and an overall shape of twisted hexagonal cylinder with six sulfur atoms and six silver atoms alternating on a puckered drum-like surface. Each Ag atom is trigonally coordinated by one N and two S ligands. The overall [Ag(mna)](6)(6-).4Na(+).2[(HOCH(2))(3)CNH(3)](+).10H(2)O complex has a layered appearance in the crystal packing diagram, with a [Ag(mna)](6)(-) cluster layer alternating with a solvent layer consisting of sodium atoms, Tris buffer cations, and water molecules. The structure is almost identical to that of a neutral [Ag(Hmna)](6) complex reported earlier. The neutral and charged complexes are both known to possess antimicrobial activities, and some biological properties of these and related compounds are briefly discussed in this paper.

Anti-Bacterial Agents↗

Neutron diffraction studies on rubredoxin from Pyrococcus furiosus.

Single-crystal neutron diffraction data up to a resolution of 1.5 A have been collected at room temperature on two forms of rubredoxin using the BIX-3 diffractometer at the JRR-3 reactor of the Japan Atomic Energy Research Institute (JAERI). Rubredoxin is a small iron-sulfur redox protein with 53 amino acid residues, and the source of this particular protein is the hyperthermophile Pyrococcus furiosus, a microorganism that normally lives at temperatures near that of boiling water. Data were collected on crystals of the wild-type protein and on a mutant in which three of the residues have been replaced. In this paper we will be describing several sets of results arising from these high-resolution neutron structure determinations: (a) the H/D exchange pattern of the N-H bonds of the main backbone, which give information about which regions of the molecule are more exposed to solvent; (b) the orientations of some of the O-D bonds in the protein, information which is often not obtainable from X-ray results; (c) the structure and appearance of water molecules in the protein crystals; and (d) some structural features which may help rationalize the remarkable thermal stability of the wild-type protein from this intriguing microorganism

Binding Sites↗