Biomedical subjects

Roberto Danovaro

Publications and source records attributed to Roberto Danovaro.

11 recordsLinked to original sources

PubMed2006

Impact of heavy metals and PCBs on marine picoplankton.

Synergistic/antagonistic effects of multiple contaminants in marine environments are almost completely unexplored. In the present study, we investigated the effects of heavy metals (Zn and Pb) and PCBs on picoplankton abundance, biomass, cell size distribution, and bacterial C production. Natural picoplankton assemblages were exposed to heavy metals (Zn or Pb), organic contaminants (PCBs, Aroclor 1260), and to a mixture of different contaminants. The results of the present study indicate that Zn addition stimulated heterotrophic growth, whereas Pb has a negative impact on heterotrophic picoplankton, particularly significant in the first 24 h. Heavy metals had no effects on the autotrophic component. The addition of Aroclor 1260 had a significant impact on abundance, biomass, and cell size of autotrophic and heterotrophic picoplankton, and reduced significantly bacterial secondary production. Three weeks after PCB treatment, heterotrophic bacteria displayed a clear resilience, both in terms of abundance and biomass, reaching values comparable to those of the controls, but not in terms of bacterial C production. Our results indicate that picoplankton can be sensitive indicators of impact determined by heavy metals and PCBs in coastal marine systems.

Animals↗

PubMed2005

Sediment resuspension effects on the benthic microbial loop in experimental microcosms.

Sediment resuspension induced by anthropogenic disturbance is becoming a major threat of marine coastal ecosystems worldwide. The effects of sediment resuspension on the pelagic domain and on macro- and meiobenthos are well documented in the literature, whereas the effects on the benthic microbial components are nearly neglected. We have investigated the effects of sediment resuspension at two different disturbance levels on benthic bacterial abundance, biomass, and activities and on heterotrophic nanobenthos abundance in experimental microcosms. The results of our experiments pointed out that, independently from the amount of involved energy, sediment resuspension determined a general decrease of all benthic microbial components. The main effects consisted of a decreased abundance of the metabolically active bacterial fraction and of heterotrophic nanobenthos abundance. However, the amount of energy involved in sediment resuspension had differential effects on the structure and functioning of the benthic microbial loop, but only in the short term (i.e., within 36 h). Sediment resuspension had a stimulatory effect on activities of surviving bacterial cells, which, in turn, resulted in increased sediment organic C turnover rates. We hypothesize that such an effect, enhancing nutrient availability, might have relevant consequences on the trophic state of coastal marine ecosystem.

Aminopeptidases↗

PubMed2005

Imbalance between phytoplankton production and bacterial carbon demand in relation to mucilage formation in the Northern Adriatic Sea.

Spatial and temporal changes in phytoplankton production and bacterial C demand were investigated at four stations in the Northern Adriatic Sea over 3 years. The effect of the Po River plume was observed at the western stations; in particular, the northernmost one (B06) showed the highest values of primary production, both as hourly peaks (up to 14 mg C m(-3) h(-1)) and daily water column integrated values (up to 740 mg C m(-2) day(-1)), the southern station (C04) was only sporadically influenced and did not differ significantly from the easternmost ones (C12 and B13), where the lowest TPP values were recorded (around 1 mg C m(-3) h(-1)). In this study the first in situ data are reported on short-term phytoplankton C extra cellular release in the Northern Adriatic Sea. At every station a considerable percentage of primary production (PER>20% as an average, with peaks of up to 70%) was released as dissolved organic carbon. In particular, an association of fairly high PER (>10%) and specific production (Pb>10 mg C mg chl(-1) h(-1)) was observed from spring to summer, when the mucilage phenomenon usually starts. This result might suggest the presence of an uncoupling between photosynthesis and growth, probably related with nutrient availability, which would be responsible for a high production of extra cellular organic carbon. Phytoplankton primary production and bacterial carbon production were closely related and bacterial C production accounted, on average, for a higher percentage of primary production than the values typically reported in the literature on aquatic environments. The flow of organic matter from phytoplankton to bacteria seems to satisfy the bacterial carbon demand during most of the spring and summer, at least in the upper water layers. However, during the summer, there is evidence that BCD sometimes exceeds the amount of C produced by phytoplankton. Neither phytoplankton nor bacterial production showed significant differences over the relevant years, and their absolute values did not change when comparing periods with or without mucilage. However, there were indications of an uncoupling between phytoplankton photosynthesis and growth and of a shift from an autotrophic to a heterotrophic metabolism, especially during the spring and summer period when mucilage might occur.

Bacteria↗

PubMed2005

Response of benthic protozoa and thraustochytrid protists to fish farm impact in seagrass (Posidonia oceanica) and soft-bottom sediments.

We investigated the impact of fish farm biodeposition on benthic bacteria, thraustochytrid protists, and heterotrophic protozoa (nanoflagellates and ciliates) in an oligotrophic area of the Mediterranean Sea. The fish farm impact was investigated both on a seagrass (Posidonia oceanica) bed and on soft bottom sediments. In both systems, sediment samples were collected with a multicontrol sampling strategy (i.e., beneath the fish farm and at three control sites per system). The uneaten food pellets supplied to the fish determined the accumulation of sediment organic matter and the enhancement of protein content in impacted sediments (both seagrass bed and soft sediments). In both systems, the abundance and biomass of heterotrophic protists increased significantly beneath the fish farm, but the structure of the protist assemblages responded differently in vegetated and unvegetated sediments. Thraustochytrid abundance increased significantly in impacted seagrass. These results provide evidence that the structure of protist assemblages respond significantly to fish farm biodeposition and indicate that the monitoring of these benthic components provides complementary information for the assessment of the fish farm impact on the benthic systems.

Alismatales↗

PubMed2005

Extracellular DNA plays a key role in deep-sea ecosystem functioning.

The ecological role and biogeochemical relevance of extracellular DNA in the oceanic sediments are unknown. Our global estimates indicate that up to 0.45 gigatons of extracellular DNA are present in the top 10 centimeters of deep-sea sediments, representing the largest reservoir of DNA in the world oceans. We demonstrate that extracellular DNA accounts for about one fifth of the total organic phosphorus regeneration and provides almost half of the prokaryotic demand for organic phosphorus. It therefore plays a key role in deep-sea ecosystem functioning on a global scale.

Animals↗

PubMed2005

Simultaneous recovery of extracellular and intracellular DNA suitable for molecular studies from marine sediments.

The occurrence of high extracellular DNA concentrations in aquatic sediments (concentrations that are 3 to 4 orders of magnitude greater than those in the water column) might play an important role in biogeochemical cycling, as well as in horizontal gene transfer through natural transformation. Since isolation of extracellular DNA from sediments is a difficult and unsolved task, in this study we developed an efficient procedure to recover simultaneously DNA associated with microbial cells and extracellular DNA from the same sediment sample. This procedure is specifically suitable for studying extracellular DNA because it avoids any contamination with DNA released by cell lysis during handling and extraction. Applying this procedure to different sediment types, we obtained extracellular DNA concentrations that were about 10 to 70 times higher than the intracellular DNA concentrations. Using specific targeted prokaryotic primers, we obtained evidence that extracellular DNA recovered from different sediments did not contain amplifiable 16S rRNA genes. By contrast, using DNA extracted from microbial cells as the template, we always amplified 16S rRNA genes. Although 16S rRNA genes were not detected in extracellular DNA, analyses of the sizes of extracellular DNA indicated the presence of high-molecular-weight fragments that might have contained other gene sequences. This protocol allows investigation of extracellular DNA and its possible participation in natural transformation processes.

DNA, Bacterial↗

PubMed2005

Pelagic-benthic coupling and diagenesis of nucleic acids in a deep-sea continental margin and an open-slope system of the Eastern Mediterranean.

Downward fluxes of nucleic acids adsorbed onto settling particles play a key role in the supply of organic phosphorus and genetic material to the ocean interior. However, information on pelagic-benthic coupling, diagenesis, and processes controlling nucleic acid preservation in deep-sea sediments is practically nonexistent. In this study, we compared nucleic acid fluxes, sedimentary DNA and RNA concentrations, and the enzymatically hydrolyzable fraction of DNA in a bathyal continental margin (North Aegean Sea) and an open-sea system (South Aegean Sea) of the Eastern Mediterranean. The two systems displayed contrasting patterns of nucleic acid fluxes, which increased significantly with depth in the North Aegean Sea and decreased with depth in the South Aegean Sea. These results suggest that in continental margin and open-ocean systems different processes control the nucleic acid supply to the sea floor. Differences in nucleic acid fluxes were reflected by nucleic acid concentrations in the sediments, which reached extremely high values in the North Aegean Sea. In this system, a large fraction of DNA may be buried, as suggested by the large fraction of DNA resistant to nuclease degradation and by estimates of burial efficiency (ca. eight times higher in the North than in the South Aegean Sea). Overall, the results reported here suggest that the preservation of DNA in deeper sediment layers may be favored in benthic systems characterized by high sedimentation rates.

DNA↗

PubMed2005

Viral production, decay rates, and life strategies along a trophic gradient in the North Adriatic Sea.

Although the relationships between trophic conditions and viral dynamics have been widely explored in different pelagic environments, there have been few attempts at independent estimates of both viral production and decay. In this study, we investigated factors controlling the balance between viral production and decay along a trophic gradient in the north Adriatic basin, providing independent estimates of these variables and determining the relative importance of nanoflagellate grazing and viral life strategies. Increasing trophic conditions induced an increase of bacterioplankton growth rates and of the burst sizes. As a result, eutrophic waters displayed highest rates of viral production, which considerably exceeded observed rates of viral decay (up to 2.9 x 10(9) VLP liter(-1) h(-1)). Viral decay was also higher in eutrophic waters, where it accounted for ca. 40% of viral production, and dropped significantly to 1.3 to 10.7% in oligotrophic waters. These results suggest that viral production and decay rates may not necessarily be balanced in the short term, resulting in a net increase of viruses in the system. In eutrophic waters nanoflagellate grazing, dissolved-colloidal substances, and lysogenic infection were responsible together for the removal of ca. 66% of viral production versus 17% in oligotrophic waters. Our results suggest that different causative agents are primarily responsible for the removal of viruses from the water column in different trophic conditions. Factors other than those considered in the past might shed light on processes responsible for the removal and/or decay of viral particles from the water column.

Animals↗

PubMed2004

Meiofaunal colonisation on artificial substrates: a tool for biomonitoring the environmental quality on coastal marine systems.

The use of artificial substrates for monitoring environmental quality and contaminant impact has been repeatedly suggested, but little information is yet available on the applicability and the sensitivity of this approach. One of the crucial points to be addressed for using artificial substrates, as tools mirroring actual benthic community state, is assessing whether, and how, they reflect in situ conditions characterising natural sediments. In this study we investigated short-term dynamics of meiofaunal colonisation on artificial substrates (bottle brushes) deployed in impacted and "pristine" (control) sites. Meiofaunal colonisation reached a threshold level after 4-6 days in both impacted and control sites but with significantly higher densities in artificial substrates deployed in the control site. Meiofaunal parameters in artificial substrates reflected those of meiofaunal assemblages inhabiting natural sediments where artificial substrates were deployed. Colonised artificial substrates were then transplanted from impacted to control sites. This caused a significant increase of meiofaunal abundance, which after 5 days reached values indistinguishable from the non-impacted control. Given the rapid colonisation time, meiofaunal sensitivity to changing environmental conditions, it can be concluded that artificial substrates can represent an useful tool to be further developed for routine and low-cost monitoring studies aiming at integrating biological indicators of environmental quality.

Animals↗

PubMed2002

Impact on the water column biogeochemistry of a Mediterranean mussel and fish farm.

We investigated and compared the impact of organic loads due to the biodeposition of mussel and fish farms on the water column of a coastal area of the Tyrrhenian Sea (Western Mediterranean). Physico-chemical data (including oxygen, nutrients. DOC and particulate organic matter), microbial variables (picoplankton and picophytoplankton density and biomass) and phytoplankton biomass (as chlorophyll-a) were determined on a monthly basis from March 1997 to February 1998. The results of this study indicate that both fish farm and mussel culture did not alter significantly dissolved inorganic phosphorus and chlorophyll-a values, while inorganic nitrogen concentrations were higher in mussel farm area. However, waters overlying the fish farm presented significantly higher DOC concentrations. In contrast, no significant differences were observed comparing particulate matter concentrations. The increased DOC concentrations determined a response of the heterotrophic fraction of picoplankton, while picophytoplankton, likewise phytoplankton. did not display differences among fish or mussel farms and control site. From the analysis of the different microbial components, it is possible to conclude that the impact of fish farms is evident only for the heterotrophic components. The comparative analysis of the mussel biodeposition and fish-farm impact revealed that mussel farms induced a considerably lower disturbance, apparently limited to an increased density and biomass of microbial assemblages beneath the mussel cultures.

Animals↗

PubMed2002

Higher abundance of bacteria than of viruses in deep Mediterranean sediments.

The interactions between viral abundance and bacterial density, biomass, and production were investigated along a longitudinal transect consisting of nine deep-sea stations encompassing the entire Mediterranean basin. The numbers of viruses were very low (range, 3.6 x 10(7) to 12.0 x 10(7) viruses g(-1)) and decreased eastward. The virus-to-bacterium ratio was always < 1.0, indicating that the deep-sea sediments of the Mediterranean Sea are the first example of a marine ecosystem not numerically dominated by viruses. The lowest virus numbers were found where the lowest bacterial metabolism and turnover rates and the largest cell size were observed, suggesting that bacterial doubling time might play an important role in benthic virus development.

Bacteria↗