Biomedical subjects

Rudi van Eldik

Publications and source records attributed to Rudi van Eldik.

At least 19 recordsLinked to original sources

PubMed2007

Characterisation of polymer fractions from waste electrical and electronic equipment (WEEE) and implications for waste management.

There is an increasing interest in the end-of-life management of polymers present in waste electrical and electronic equipment (WEEE). This is mainly due to high recycling and recovery quotas set by the European WEEE directive, which can only be fulfilled by including the plastic fraction in recycling and recovery approaches. Previous studies identified a high material diversity and various contaminants in WEEE plastics, including heavy metals, polybrominated biphenyls (PBB), diphenyl ethers (PBDE), as well as polybrominated dibenzodioxins and dibenzofurans (PBDD/F). These substances are regulated by European directives that limit their levels in marketable products. Consequently, both material diversity and contaminants are strong arguments against material recycling and point to hazardous waste treatment. However, recent developments in the production of flame retardants and electrical and electronic goods aimed to reduce contaminants and material diversity. Thus, the present study summarises updated contaminant levels of plastic fractions of European WEEE, as well as data on materials in waste housing polymers. Material characterisation revealed housing fractions to be interesting sources for polymer recycling, which however has to implement potent material separation and/or bromine elimination techniques. With respect to contaminants, our data indicate an effective phase-out of PBB, but still high levels of PBDE and PBDD/F are found. Sources and implications for the material recycling and thermal recovery approaches are discussed in detail.

Dioxins↗

PubMed2006

Direct measurements of rate constants and activation volumes for the binding of H2, D2, N2, C2H4, and CH3CN to W(CO)3(PCy3)2: theoretical and experimental studies with time-resolved step-scan FTIR and UV-vis spectroscopy.

Pulsed 355 nm laser excitation of toluene or hexane solutions containing W-L (W = mer,trans-W(CO)3(PCy3)2; PCy3 = tricyclohexylphosphine; L = H2, D2, N2, C2H4, or CH3CN) resulted in the photoejection of ligand L and the formation of W. A combination of nanosecond UV-vis flash photolysis and time-resolved step-scan FTIR (s2-FTIR) spectroscopy was used to spectroscopically characterize the photoproduct, W, and directly measure the rate constants for binding of the ligands L to W to reform W-L under pseudo-first-order conditions. From these data, equilibrium constants for the binding of L to W were estimated. The UV-vis flash photolysis experiments were also performed as a function of pressure in order to determine the activation volumes, DeltaV thermodynamic, for the reaction of W with L. Small activation volumes ranging from -7 to +3 cm3 mol(-1) were obtained, suggesting that despite the crowded W center an interchange mechanism between L and the agostic W...H-C interaction of one of the PCy3 ligands (or a weak interaction with a solvent molecule) at the W center takes place in the transition state. Density functional theory (DFT) calculations were performed at the B3LYP level of theory on W with/without the agostic C-H interaction of the PCy3 ligand and also on the series of model complexes, mer,trans-W(CO)3(PH3)2L (W'-L, where L = H2, N2, C2H4, CO, or n-hexane) in an effort to confirm the infrared spectroscopic assignment of the W-L complexes, to simulate and assign the electronic transitions in the UV-vis spectra, to determine the nature of the HOMO and LUMO of W-L, and to understand the agostic C-H interaction of the ligand vs solvent interaction. Our DFT calculations indicate an entropy effect that favors agostic W...H-C interaction over a solvent sigma C-H interaction by 8-10 kcal mol(-1).

Journal Article↗

PubMed2006

Thermodynamic and kinetic studies on the binding of nitric oxide to a new enzyme mimic of cytochrome p450.

A new model for the P450 enzyme carrying a SO(3)(-) ligand coordinated to iron(III) (complex 2) reversibly binds NO to yield the nitrosyl adduct. The rate constant for NO binding to 2 in toluene is of the same order of magnitude as that found for the nitrosylation of the native, substrate-bound form of P450(cam) (E.S-P450(cam)). Large and negative activation entropy and activation volume values for the binding of NO to complex 2 support a mechanism that is dominated by bond formation with concomitant iron spin change from S = (5)/(2) to S = 0, as proposed for the reaction between NO and E.S-P450(cam). In contrast, the dissociation of NO from 2(NO) was found to be several orders of magnitude faster than the corresponding reaction for the E.S-P450(cam)/NO system. In a coordinating solvent such as methanol, the alcohol coordinates to iron(III) of 2 at the distal position, generating a six-coordinate, high-spin species 5. The reaction of NO with 5 in methanol was found to be much slower in comparison to the nitrosylation reaction of 2 in toluene. This behavior can be explained in terms of a mechanism in which methanol must be displaced during Fe-NO bond formation. The thermodynamic and kinetic data for NO binding to the new model complexes of P450 (2 and 5) are discussed in reference to earlier results obtained for closely related nitrosylation reactions of cytochrome P450(cam) (in the presence and in the absence of the substrate) and a thiolate-ligated iron(III) model complex.

Binding Sites↗

PubMed2006

Structure of sodium bis(N-methyl-iminodiacetato)iron(III): trans-meridional N-coordination in the solid state and in solution.

The results of a detailed solid state and solution structural study of the Fe(III) bis-mida complex [Fe(III)(mida)(2)]- (mida = N-methyl-iminodiacetate) are reported. The structure of the sodium salt Na[Fe(mida)2][NaClO4]2.3H2O (1) was determined by single-crystal X-ray analysis. The complex anion in 1 contains a six-coordinate Fe(III) centre bound to two tridentate mida ligands arranged in the meridional configuration, and the mer Fe(III)N2O4 chromophore shows a high degree of distortion from regular octahedral symmetry. Raman- and UV/VIS/NIR spectroscopic measurements showed that no gross changes take place in the Fe(III) coordination sphere upon redissolution in water. Quantum chemical calculations of all three possible configurations of the [Fe(mida)2]- complex ion in the gas phase support the finding that the mer isomer is more stable than the u-fac (cis) and s-fac (trans) isomers. Redox potential measurements of the Fe(III/II)(mida) couple in dependence of pH led to the following values for the equilibrium contants: log beta(III)(101) = 11.98 +/- 0.05, log beta(III)(102) = 20.49 +/- 0.01, pK(III)(a1 OH) = 7.81; log beta(II)(101) = 6.17 +/- 0.01, log beta(II)(102) = 11.39 +/- 0.01.

Journal Article↗

PubMed2006

Kinetic, thermodynamic, and mechanistic patterns for free (unbound) cytochrome c at Au/SAM junctions: impact of electronic coupling, hydrostatic pressure, and stabilizing/denaturing additives.

Combined kinetic (electrochemical) and thermodynamic (calorimetric) investigations were performed for an unbound (intact native-like) cytochrome c (CytC) freely diffusing to and from gold electrodes modified by hydroxyl-terminated self-assembled monolayer films (SAMs), under a unique broad range of experimental conditions. Our approach included: 1) fine-tuning of the charge-transfer (CT) distance by using the extended set of Au-deposited hydroxyl-terminated alkanethiol SAMs [-S-(CH(2))(n)-OH] of variable thickness (n=2, 3, 4, 6, 11); 2) application of a high-pressure (up to 150 MPa) kinetic strategy toward the representative Au/SAM/CytC assemblies (n=3, 4, 6); 3) complementary electrochemical and microcalorimetric studies on the impact of some stabilizing and denaturing additives. We report for the first time a mechanistic changeover detected for "free" CytC by three independent kinetic methods, manifested through 1) the abrupt change in the dependence of the shape of the electron exchange standard rate constant (k(o)) versus the SAM thickness (resulting in a variation of estimated actual CT range within ca. 15 to 25 A including ca. 11 A of an "effective" heme-to-omega-hydroxyl distance). The corresponding values of the electronic coupling matrix element vary within the range from ca. 3 to 0.02 cm(-1); 2) the change in activation volume from +6.7 (n=3), to approximately 0 (n=4), and -5.5 (n=6) cm(3) mol(-1) (disclosing at n=3 a direct pressure effect on the protein's internal viscosity); 3) a "full" Kramers-type viscosity dependence for k(o) at n=2 and 3 (demonstrating control of an intraglobular friction through the external dynamic properties), and its gradual transformation to the viscosity independent (nonadiabatic) regime at n=6 and 11. Multilateral cross-testing of "free" CytC in a native-like, glucose-stabilized and urea-destabilized (molten-globule-like) states revealed novel intrinsic links between local/global structural and functional characteristics. Importantly, our results on the high-pressure and solution-viscosity effects, together with matching literature data, strongly support the concept of "dynamic slaving", which implies that fluctuations involving "small" solution components control the proteins' intrinsic dynamics and function in a highly cooperative manner as far as CT processes under adiabatic conditions are concerned.

Alkanes↗

PubMed2006

Nitrite impurities are responsible for the reaction observed between vitamin B12 and nitric oxide in acidic aqueous solution.

The reaction between aquacobalamin, Cbl(H2O), and NO was studied at low pH. As previously reported, the final product of the reaction is the same as that obtained in the reaction of NO and reduced Cbl(H2O), viz. Cbl(NO-). Nevertheless, this reductive nitrosylation is preceded by a faster reaction (accompanied by small absorbance changes) that depends on the HNO2 concentration but not on the NO concentration. Kinetic and UV-vis spectroscopic data show that Cbl(NO2-) is generated during this reaction. Spectroscopic data show that the dimethylbenzimidazole group trans to the NO2- ligand is protonated and partially dechelated at pH 1, by which a reaction with NO is induced. DFT calculations were performed to compare the ability of NO and NO2- to bind to cobalamin and their influence on the stability of the dimethylbenzimidazole group. The reductive nitrosylation reaction shows a quadratic dependence on the HNO2 concentration and an inverse dependence on the NO concentration. It also strongly depends on pH and is no longer observed at pH > 4. On the basis of earlier work performed on a series of Co(III) porphyrins, a mechanism is proposed that can quantitatively account for the HNO2 and NO dependencies. The reductive nitrosylation reaction is practically dominated by a back reaction, i.e., the reaction between Cbl(NO-) and HNO2, which accounts for the strange NO and HNO2 concentration dependencies observed.

Acids↗

PubMed2006

Mechanistic studies on the nitrite-catalyzed reductive nitrosylation of highly charged anionic and cationic Fe(III) porphyrin complexes.

The nitrosyl complexes formed during the binding of NO to the (Pn)FeIII(H2O)2 (n = 8+ and 8-) complexes, viz., (P8-)FeII(H2O)(NO+) and (P8+)FeII(H2O)(NO+), undergo subsequent reductive nitrosylation reactions that were found to be catalyzed by nitrite, which was also produced during the reaction. The effect of the nitrite concentration, pH, temperature, and pressure on the nitrite-catalyzed reductive nitrosylation process was studied in detail for (P8-)FeIII(H2O)2, (P8+)FeIII(H2O)2, and (P8+)FeIII(OH)(H2O), from which rate and activation parameters were obtained. On the basis of these data, we propose mechanistic pathways for the studied reactions. The available results favor the operation of an innersphere electron-transfer process between nitrite and coordinated NO(+). By way of comparison, the cationic porphyrin complex (P8+)FeIII(L)2 (L = H2O or OH-) was found to react with NO2(-) to yield the nitrite adduct (P8+)FeIII(L)(NO2)(-)). A detailed kinetic studied revealed that nitrite binds to (P8+)FeIII(H2O)2 according to a dissociative mechanism, whereas nitrite binding to (P8+)FeIII(OH)(H2O) at higher pH follows an associative mechanism, similar to that reported for the binding of NO to these complexes.

Anions↗

PubMed2006

Kinetics and mechanism of the reaction of [RuIII(edta)(H2O)]- with HOBr to form an intermediate RuV=O complex in aqueous solution.

The interaction of [Ru(III)(edta)(H(2)O)](-) (1) (edta = ethylenediaminetetraacetate) with the oxygen transfer agent HOBr, was studied kinetically as a function of [HOBr] and temperature (5-35 degrees C) at a fixed pH of 6.2. Spectroscopic evidence is reported for the formation of a high valent intermediate (edta)Ru(V)=O complex. Water soluble 2,2'-azobis(3-ethylbenzithiazoline-6-sulfonate) (ABTS) was employed as a trap for this intermediate in order to gain further mechanistic information. Reactions were carried out under pseudo-first conditions for [ABTS] >> [HOBr] >> [1], and were monitored as a function of time for the formation of the one-electron oxidation product ABTS(*+). The reported kinetic data are interpreted in terms of a suggested reaction mechanism and discussed in reference to data reported before.

Bromates↗

PubMed2006

Mechanistic analysis of reductive nitrosylation on water-soluble cobalt(III)-porphyrins.

The reactions of NO and/or NO2- with three water-soluble cobalt porphyrins [Co(III)(P)(H2O)2]n, where P = TPPS, TCPP, and TMPyP, were studied in detail. At pH < 3, the reaction with NO proceeds through a single reaction step. From the kinetic data and activation parameters, the [Co(III)(P)(NO)(H2O)]n complex is proposed to be the primary product of the reaction with NO. This complex reacts further with a second NO molecule through an inner-sphere electron-transfer reaction to generate the final product, [Co(III)(P)(NO-)](n-1). At pH > 3, although a single reaction step is also observed, a systematic study as a function of the NO and NO2- concentrations revealed that two reaction steps are operative. In the first, NO2- and NO compete to substitute coordinated water in [Co(III)(P)(H2O)2]n to yield [Co(III)(P)(NO)(H2O)]n and [Co(III)(P)(NO2-)(H2O)](n-1) as the primary reaction products. Only the nitrite complex could be detected and no final product formation was observed during the reaction. It is proposed that [Co(III)(P)(NO)(H2O)]n rapidly reacts with NO2- to form the nitrite complex, which in the second reaction step reacts with another NO molecule to generate the final product through an inner-sphere electron-transfer reaction. The reported results are relevant for the interaction of vitamin B(12a) with NO and NO2-.

Cobalt↗

PubMed2006

Oxidation of hydroxyurea with oxovanadium(V) ions in acidic aqueous solution.

Hydroxyurea (HU) effectively reduces vanadium(V) into vanadium(IV) species (hereafter V(V) and V(IV) species, respectively) in acidic aqueous solution via the formation of a transient complex followed by an electron transfer process that includes the formation and subsequent fading out of a free radical, U* (U* identical with H(2)N-C(=O)N(H)O*). The electron paramagnetic resonance (EPR) spectra of U* in H(2)O/D(2)O solutions suggest that the unpaired electron is located predominantly on the hydroxamate hydroxyl-oxygen atom. Visible and V(IV)-EPR spectroscopic data reveal HU as a two-electron donor, whereas formation of U*, which reduces a second V(V), indicates that electron transfer occurs in two successive one-electron steps. At the molarity ratio [V(V)]/[HU]=2, the studied reaction can be formulated as: 2 V(V)+HU-->2 V(IV)+0.98 CO(2)+0.44 N(2)O+1.1 NH(3)+0.1 NH(2)OH. Lack of evidence for the formation of NO is suggested to be a consequence of the slow oxidation of HNO due to the too low reduction potential of the V(V)/V(IV) couple under the experimental conditions used. The nuclear magnetic resonance ((51)V-NMR) spectral data indicate protonation of (H(2)O)(4)V(V)O(2)(+), and the protonation equilibrium constant was determined to be K=0.7 M(-1). Spectrophotometric titration data for the V(V)-HU system reveal formation of (H(2)O)(2)V(V)O(OH)U(+) and (H(2)O)(3)V(V)OU(2+). Their stability constants were calculated as K(110)=5 M(-1) and K(111)=22 M(-2), where the subscript digits refer to (H(2)O)(4)V(V)O(2)(+), HU and H(+), respectively.

Electron Spin Resonance Spectroscopy↗

PubMed2006

A new enantiomerization mechanism for tripodal penta-coordinate Zn(II)(nta) complexes. Theoretical clarification of the observed 1H NMR spectrum.

Based on DFT calculations (RB3LYP/LANL2DZp), the unexpected single-line 1H NMR spectrum of Zn(II)(nta), nta = 2,2',2''-nitrilotriacetate, can be ascribed to a non-dissociative enantiomerization process (deltadeltadelta<=>lambdalambdalambda) from C3viaC3v to C3 symmetry. The energy barrier is rather low and depends to a lesser extent on the nature of the co-ligand in [Zn(nta)X]2- (X: H-, CH3- NH2-, OCH3-, F-, Cl-, Br-, I-) and [Zn(nta)Y]- (Y: NCH, CO, N2, O(CH3)2), but more so on the overall charge of the complex. The energy barrier for enantiomerization of [Zn(nta)X]2- is between 5.7 and 6.7 kcal mol-1, and for [Zn(nta)Y]- between 2.2 and 3.1 kcal mol-1.

Journal Article↗

PubMed2006

Mechanistic information from low-temperature rapid-scan and NMR measurements on the protonation and subsequent reductive elimination reaction of a (diimine)platinum(II) dimethyl complex.

A detailed kinetic study of the protonation and subsequent reductive elimination reaction of a (diimine)platinum(II) dimethyl complex was undertaken in dichloromethane over the temperature range of -90 to +10 degrees C by stopped-flow techniques. Time-resolved UV-vis monitoring of the reaction allowed the assessment of the effects of acid concentration, coordinating solvent (MeCN) concentration, temperature, and pressure. The second-order rate constant for the protonation step was determined to be 15200 +/- 400 M(-1) s(-1) at -78 degrees C, and the corresponding activation parameters are DeltaH = 15.2 +/- 0.6 kJ mol(-1) and DeltaS = -85 +/- 3 J mol(-1) K(-1), which are in agreement with the addition of a proton that results in the formation of the platinum(IV) hydrido complex. The kinetics of the second, methane-releasing reaction step do not show an acid dependence, and the MeCN concentration also does not significantly affect the reaction rate. The activation parameters for the second reaction step were found to be DeltaH = 75 +/- 1 kJ mol(-1), DeltaS = +38 +/- 5 J mol(-1) K(-1), and DeltaV = +18 +/- 1 cm(3) mol(-1), strongly suggesting a dissociative character of the rate-determining step for the reductive elimination reaction. The spectroscopic and kinetic observations were correlated with NMR data and assisted the elucidation of the underlying reaction mechanism.

Journal Article↗

PubMed2006

Thermodynamic and kinetic studies on reactions of Pt(II) complexes with biologically relevant nucleophiles.

The effect of different N-N spectator ligands on the reactivity of platinum(II) complexes was investigated by studying the water lability of [Pt(diaminocyclohexane)(H2O)2]2+ (Pt(dach)), [Pt(ethylenediamine)(H2O)2]2+ (Pt(en)), [Pt(aminomethylpyridine)(H2O)2]2+ (Pt(amp)), and [Pt(N,N'-bipyridine)(H2O)2]2+ (Pt(bpy)). Some of the selected N-N chelates form part of the coordination sphere of Pt(II) drugs in clinical use, as in Pt(dach) (oxaliplatin), or are models, regarding the nature of the amines, with higher stability in terms of substitution and hydrolysis of the diamine moiety, as in Pt(en) (cisplatin) and Pt(amp) (AMD473). The effect of pi-acceptors on the reactivity was investigated by introducing one (Pt(amp)) or two pyridine rings (Pt(bpy)) in the system. The pK(a) values for the two water molecules (viz., Pt(dach) (pK(a1) = 6.01, pK(a2) = 7.69), Pt(en) (pK(a1) = 5.97, pK(a2) = 7.47), Pt(amp) (pK(a1) = 5.82, pK(a2) = 6.83), Pt(bpy) (pK(a1) = 4.80, pK(a2) = 6.32) show a decrease in the order Pt(dach) > Pt(en) > Pt(amp) > Pt(bpy). The substitution of both coordinated water molecules by a series of nucleophiles (viz., thiourea (tu), L-methionine (L-Met), and guanosine-5'-monophosphate (5'GMP-) was investigated under pseudo-first-order conditions as a function of concentration, temperature, and pressure using UV-vis spectrophotometric and stopped-flow techniques and was found to occur in two subsequent reaction steps. The following k1 values for Pt(dach), Pt(en), Pt(amp), and Pt(bpy) were found: tu (25 degrees C, M(-1) s(-1)) 21 +/- 1, 34.0 +/- 0.4, 233 +/- 5, 5081 +/- 275; L-Met (25 degrees C) 0.85 +/- 0.01, 0.70 +/- 0.03, 2.15 +/- 0.05, 21.8 +/- 0.6; 5'GMP- (40 degrees C) 5.8 +/- 0.2, 3.9 +/- 0.1, 12.5 +/- 0.5, 24.4 +/- 0.3. The results for k2 for Pt(dach), Pt(en), Pt(amp), and Pt(bpy) are as follows: tu (25 degrees C, M(-1) s(-1)) 11.5 +/- 0.5, 10.2 +/- 0.2, 38 +/- 1, 1119 +/- 22; L-Met (25 degrees C, s(-1)) 2.5 +/- 0.1, 2.0 +/- 0.2, 1.2 +/- 0.3, 290 +/- 4; 5'GMP- (40 degrees C, M(-1) s(-1)) 0.21 +/- 0.02, 0.38 +/- 0.02, 0.97 +/- 0.02, 24 +/- 1. The activation parameters for all reactions suggest an associative substitution mechanism. The pK(a) values and substitution rates of the complexes studied can be tuned through the nature of the N-N chelate, which is important in the development of new active compounds for cancer therapy.

Guanosine Monophosphate↗

PubMed2006

Kinetics and mechanism of the reactions of Pd(II) complexes with azoles and diazines. Crystal structure of [Pd(bpma)(H2O)](ClO4)2.2H2O.

Substitution reactions of the complexes [Pd(bpma)(H2O)]2+, [Pd(bpma)Cl]+, [Pd(dien)(H2O)]2+ and [Pd(dien)Cl]+, where bpma = bis(2-pyridylmethyl)amine and dien = diethylentriamine or 1,5-diamino-3-azapentane, with some nitrogen-donor ligands such as triazole, pyrazole, pyrimidine, pyrazine and pyridazine, were studied in an aqueous 0.10 M NaClO4 at pH 2.8 using variable-temperature and -pressure stopped-flow spectrophotometry. The second-order rate constants indicate that the Pd(II) complexes of bpma, viz. [Pd(bpma)(H2O)]2+ and [Pd(bpma)Cl]+, are more reactive than the complexes of dien, viz. [Pd(dien)(H2O)]2+ and [Pd(dien)Cl]+. Also, the aqua complexes, [Pd(bpma)(H2O)]2+ and [Pd(dien)(H2O)]2+, are much more reactive than the corresponding chloro complexes. The most reactive nucleophile of the five-membered rings is triazole and for the six-membered rings the most reactive one is pyridazine. Activation parameters were determined for all reactions and the negative entropies and volumes of activation (Delta S++, Delta V++) support an associative ligand substitution mechanism. The crystal structure of [Pd(bpma)(H2O)](ClO4)2.2H2O was determined by X-ray diffraction. Crystals are monoclinic with the space group P2(1)/c. The coordination geometry of [Pd(bpma)(H2O)]2+ is distorted square-planar. The Pd-N (central) bond distance, 1.958(5) A, is shorter than the other two Pd-N distances, 2.007(5) and 2.009(5) A. The Pd-O distance is 2.043(5) A.

Journal Article↗

PubMed2006

Solvent tuning of the substitution behavior of a seven-coordinate iron(III) complex.

A detailed kinetic study of the substitution behavior of the seven-coordinate [Fe(dapsox)(L)2]ClO4 complex (H(2)dapsox = 2,6-diacetylpyridine-bis(semioxamazide), L = solvent or its deprotonated form) with thiocyanate as a function of the thiocyanate concentration, temperature, and pressure was undertaken in protic (EtOH and acidified EtOH and MeOH) and aprotic (DMSO) organic solvents. The lability and substitution mechanism depend strongly on the selected solvent (i.e., on solvolytic and protolytic processes). In the case of alcoholic solutions, substitution of both solvent molecules by thiocyanate could be observed, whereas in DMSO only one substitution step occurred. For both substitution steps, [Fe(dapsox)(L)2]ClO4 shows similar mechanistic behavior in methanol and ethanol, which is best reflected by the values of the activation volumes (MeOH DeltaV(I) = +15.0 +/- 0.3 cm(3) mol(-1), DeltaV(II) = +12.0 +/- 0.2 cm(3) mol(-1); EtOH DeltaV(I) = +15.8 +/- 0.7 cm(3) mol(-1), DeltaV(II) = +11.1 +/- 0.5 cm(3) mol(-1)). On the basis of the reported activation parameters, a dissociative (D) mechanism for the first substitution step and a D or dissociative interchange (I(d)) mechanism for the second substitution step are suggested for the reaction in MeOH and EtOH. This is consistent with the predominant existence of alcoxo [Fe(dapsox)(ROH)(OR)] species in alcoholic solutions. In comparison, the activation parameters for the substitution of the aqua-hydroxo [Fe(dapsox)(H2O)(OH)] complex by thiocyanate at pH 5.1 in MES were determined to be DeltaH = 72 +/- 3 kJ mol(-1), DeltaS = +38 +/- 11 J K(-1) mol(-1), and DeltaV = -3.0 +/- 0.1 cm(3) mol(-1), and the operation of a dissociative interchange mechanism was suggested, taking the effect of pressure on the employed buffer into account. The addition of triflic acid to the alcoholic solutions ([HOTf] = 10(-3) and 10(-2) M to MeOH and EtOH, respectively) resulted in a drastic changeover in mechanism for the first substitution step, for which an associative interchange (Ia) mechanism is suggested, on the basis of the activation parameters obtained for both the forward and reverse reactions and the corresponding volume profile. The second substitution step remained to proceed through an I(d) or D mechanism (acidified MeOH DeltaV(II) = +9.2 +/- 0.2 cm(3) mol(-1); acidified EtOH DeltaV(II) = +10.2 +/- 0.2 cm(3) mol(-1)). The first substitution reaction in DMSO was found to be slowed by several orders of magnitude and to follow an associative interchange mechanism (DeltaS = -50 +/- 9 J K(-1) mol(-1), DeltaV(I) = -1.0 +/- 0.5 cm(3) mol(-1)), making DMSO a suitable solvent for monitoring substitution processes that are extremely fast in aqueous solution.

Journal Article↗

PubMed2006

Transition state characterization for the reversible binding of dihydrogen to bis(2,2'-bipyridine)rhodium(I) from temperature- and pressure-dependent experimental and theoretical studies.

Thermodynamic and kinetic parameters for the oxidative addition of H2 to [Rh(I)(bpy)2]+ (bpy = 2,2'-bipyridine) to form [Rh(III)(H)2(bpy)2]+ were determined from either the UV-vis spectrum of equilibrium mixtures of [Rh(I)(bpy)2]+ and [Rh(III)(H)2(bpy)2]+ or from the observed rates of dihydride formation following visible-light irradiation of solutions containing [Rh(III)(H)2(bpy)2]+ as a function of H2 concentration, temperature, and pressure in acetone and methanol. The activation enthalpy and entropy in methanol are 10.0 kcal mol(-1) and -18 cal mol(-1) K(-1), respectively. The reaction enthalpy and entropy are -10.3 kcal mol(-1) and -19 cal mol(-1) K(-1), respectively. Similar values were obtained in acetone. Surprisingly, the volumes of activation for dihydride formation (-15 and -16 cm(3) mol(-1) in methanol and acetone, respectively) are very close to the overall reaction volumes (-15 cm(3) mol(-1) in both solvents). Thus, the volumes of activation for the reverse reaction, elimination of dihydrogen from the dihydrido complex, are approximately zero. B3LYP hybrid DFT calculations of the transition-state complex in methanol and similar MP2 calculations in the gas phase suggest that the dihydrogen has a short H-H bond (0.823 and 0.810 Angstroms, respectively) and forms only a weak Rh-H bond (1.866 and 1.915 Angstroms, respectively). Equal partial molar volumes of the dihydrogenrhodium(I) transition state and dihydridorhodium(III) can account for the experimental volume profile found for the overall process.

Journal Article↗

PubMed2006

Reactivity of aquacobalamin and reduced cobalamin toward S-nitrosoglutathione and S-nitroso-N-acetylpenicillamine.

The reactions of aquacobalamin (Cbl(III)H2O, vitamin B12a) and reduced cobalamin (Cbl(II), vitamin B12r) with the nitrosothiols S-nitrosoglutathione (GSNO) and S-nitroso-N-acetylpenicillamine (SNAP) were studied in aqueous solution at pH 7.4. UV-vis and NMR spectroscopic studies and semiquantitative kinetic investigations indicated complex reactivity patterns for the studied reactions. The detailed reaction routes depend on the oxidation state of the cobalt center in cobalamin, as well as on the structure of the nitrosothiol. Reactions of aquacobalamin with GSNO and SNAP involve initial formation of Cbl(III)-RSNO adducts followed by nitrosothiol decomposition via heterolytic S-NO bond cleavage. Formation of Cbl(III)(NO-) as the main cobalamin product indicates that the latter step leads to efficient transfer of the NO- group to the Co(III) center with concomitant oxidation of the nitrosothiol. Considerably faster reactions with Cbl(II) proceed through initial Cbl(II)-RSNO intermediates, which undergo subsequent electron-transfer processes leading to oxidation of the cobalt center and reduction of the nitrosothiol. In the case of GSNO, the overall reaction is fast (k approximately 1.2 x 10(6) M(-1) s(-1)) and leads to formation of glutathionylcobalamin (Cbl(III)SG) and nitrosylcobalamin (Cbl(III)(NO-)) as the final cobalamin products. A mechanism involving the reversible equilibrium Cbl(II) + RSNO <==> Cbl(III)SR + NO is suggested for the reaction on the basis of the obtained kinetic and mechanistic information. The corresponding reaction with SNAP is considerably slower and occurs in two distinct reaction steps, which result in the formation of Cbl(III)(NO-) as the ultimate cobalamin product. The significantly different kinetic and mechanistic features observed for the reaction of GSNO and SNAP illustrate the important influence of the nitrosothiol structure on its reactivity toward metal centers of biomolecules. The potential biological implications of the results are briefly discussed.

Molecular Structure↗

PubMed2006

A comparative mechanistic study of the reversible binding of NO to a water-soluble octa-cationic Fe(III) porphyrin complex.

The water-soluble, non-mu-oxo dimer-forming porphyrin, [5,10,15,20-tetrakis-4'-t-butylphenyl-2',6'-bis-(N-methylene-(4''-t-butylpyridinium))porphyrinato]iron(III) octabromide, (P(8+))Fe(III), with eight positively charged substituents in the ortho positions of the phenyl rings, was characterized by UV-vis and 1H NMR spectroscopy and 17O NMR water-exchange studies in aqueous solution. Spectrophotometric titrations of (P(8+))Fe(III) indicated a pKa1 value of 5.0 for coordinated water in (P(8+))Fe(III)(H2O)2. The monohydroxo-ligated (P(8+))Fe(III)(OH)(H2O) formed at 5 < pH < 12 has a weakly bound water molecule that undergoes an exchange reaction, k(ex) = 2.4 x 10(6) s(-1), significantly faster than water exchange on (P(8+))Fe(III)(H2O)2, viz. k(ex) = 5.5 x 10(4) s(-1) at 25 degrees C. The porphyrin complex reacts with nitric oxide to yield the nitrosyl adduct, (P(8+))Fe(II)(NO+)(L) (L = H2O or OH-). The diaqua-ligated (P(8+))Fe(III)(H2O)2 binds and releases NO according to a dissociatively activated mechanism, analogous to that reported earlier for other (P)Fe(III)(H2O)2 complexes. Coordination of NO to (P(8+))Fe(III)(OH)(H2O) at high pH follows an associative mode, as evidenced by negative deltaS(double dagger)(on) and deltaV(double dagger)(on) values measured for this reaction. The observed ca. 10-fold decrease in the NO binding rate on going from six-coordinate (P(8+))Fe(III)(H2O)2 (k(on) = 15.1 x 10(3) M(-1) s(-1)) to (P(8+))Fe(III)(OH)(H2O) (k(on) = 1.56 x 10(3) M(-1) s(-1) at 25 degrees C) is ascribed to the different nature of the rate-limiting step for NO binding at low and high pH, respectively. The results are compared with data reported for other water-soluble iron(III) porphyrins with positively and negatively charged meso substituents. Influence of the porphyrin periphery on the dynamics of reversible NO binding to these (P)Fe(III) complexes as a function of pH is discussed on the basis of available experimental data.

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