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Biomedical subjects

S Kumar

Publications and source records attributed to S Kumar.

At least 451 records · Page 25Linked to original sources
PubMed2001

Increased biogas production using microbial stimulants.

Laboratory studies were undertaken to evaluate the effect of microbial stimulants Aquasan and Teresan, on biogas yields from cattle dung and combined residues of cattle dung and kitchen waste, respectively. The addition of single dose of Aquasan at the rate of 10, 15 and 20 ppm to cattle dung on the first day of incubation resulted in increased gas yields ranging between 45.1 and 62.1 l/kg dry matter. Subsequent addition of Aquasan at 15 and 20 ppm dosage after a period of 15 days increased the gas yields by 15-16%. The gas production was found to be optimum at a dosage level of 15 ppm and was 39% and 55% higher with single and dual additions, respectively, than untreated cattle dung. In another bench scale study (1:1 dry matter) the addition of Teresan at 10 ppm concentration to the mixed residues of cattle dung and kitchen wastes at different solids concentration, produced 34.8% more gas (272.4 l/kg d.m.) than the uninoculated mixture at 15% TS concentration (202.4 l/kg d.m.).

Anaerobiosis↗
PubMed2001

Design, synthesis, and evaluation of alpha-ketoheterocycles as class C beta-lactamase inhibitors.

A series of specific alpha-ketoheterocycles (benzoxazole, thiazole, imidazole, tetrazole, and thiazole-4-carboxylate) has been synthesized in order to assess their potential as beta-lactamase inhibitors. The syntheses were achieved either by construction of the heterocycle (benzoxazole) from an appropriate alpha-hydroxyimidate, followed by oxidation of the alcohol, or by direct reaction of methyl phenaceturate with a lithiated heterocycle. The properties of these compounds in aqueous solution are described and their inhibitory activity against beta-lactamases assessed. They did inhibit the class C beta-lactamase of Enterobacter cloacae P99 but not the TEM beta-lactamase. The most effective inhibitor of the former enzyme (K(i)=0.11 mM) was 5-(phenylacetylglycyl) tetrazole, probably because it is an anion at neutral pH. Interpretation of the results was aided by computational models of the tetrahedral adducts. Most of the compounds also inhibited alpha-chymotrypsin but not porcine pancreatic elastase.

Drug Design↗
PubMed2001

Interdomain interactions in hinge-bending transitions.

BACKGROUND: The mechanisms that allow or constrain protein movement have not been understood. Here we study interdomain interactions in proteins to investigate hinge-bending motions. RESULTS: We find a limited number of salt bridges and hydrogen bonds at the interdomain interface, in both the "closed" and the "open" conformations. Consistently, analysis of 222 salt bridges in an independently selected database indicates that most salt bridges form within rather than between independently folding hydrophobic units. Calculations show that these interdomain salt bridges either destabilize or only marginally stabilize the closed conformation in most proteins. In contrast, the nonpolar buried surface area between the moving parts can be extensive in the closed conformations. However, when the nonpolar buried surface area is large, we find that at the interdomain interface in the open conformation it may be as large or larger than in the closed conformation. Hence, the energetic penalty of opening the closed conformation is overcome. Consistently, a large nonpolar surface area buried in the closed interdomain interface accompanies limited opening of the domains, yielding a larger interface. CONCLUSIONS: Short-range electrostatic interactions are largely absent between moving domains. Interdomain nonpolar buried surface area may be large in the closed conformation, but it is largely offset by the area buried in the open conformation. In such cases the opening of the domains appears to be relatively small. This may allow prediction of the extent of domain opening. Such predictions may have implications for the shape and size of the binding pockets in drug/protein design.

Adenylate Kinase↗
PubMed2001

Spectral profile of superficial cervical muscles.

The objective of the study was to determine the median frequency (MF) and mean power frequency (MPF) of the stermodeidomastorial, splenius capitis and trapezius in progressively and linearly increasing isometric cervical flexion and extension. There is a dearth of data on spectral parameters of cervical muscles. Such data have been generated from 40 young adult subjects (21 male and 19 female). The subjects were seated upright in an individually adjusted chair and stabilized with a 4-point Velcro restraint system to stabilize the torso. These subjects exerted isometric flexor and extensor forces in a random sequence on an instrumented resistance device (specifically designed for the study) in a gradual and linearly increasing manner with a visual feedback to their maximal voluntary contraction (MVC) within a 5 s period. Surface EMG was sampled from the sternocleidomastoid, the splenius capitis and the trapezius muscles bilaterally at 1 kHz. The EMG signals were subjected to Fast Fourier Transform (FFT) analysis. Spectral profiles of all muscles in the dimensions of frequency, power, and grade of contraction were plotted. The mean median frequency (MF), mean power frequency (MPF), peak power and total power were analyzed. In the sternocleidomastoid, and the splenius the MF increased with the grade of contraction, widening its bandwidth at higher grades. The trapezius maintained a narrow bandwidth and its MF declined with the grade of contraction.

Adult↗
PubMed2001

Controlling transgene integration in plants.

The creation of transgenic plants has brought significant advances to light in plant biotechnology. However, in spite of the fact that transgenic plants are beginning to be grown widely, controlled transgene integration into a pre-determined site remains to be achieved. Here we suggest two alternative approaches for gene targeting in plants: manipulating the host and donor sequence, and targeting during active homologous recombination stages.

Arabidopsis↗
PubMed2001

Excited-state dipole moments of some hydroxycoumarin dyes using an efficient solvatochromic method based on the solvent polarity parameter, EN(T).

Excited-state dipole moments of some hydroxycoumarins, extensively used as laser dyes, have been determined using the solvatochromic method based on the microscopic solvent polarity parameter EN(T). Agreement between experimental and Austin model 1 (AM 1) calculated dipole moment changes has been found to be close in most of the cases. Our results are expected to be quite reliable in view of the fact that the correlation of the solvatochromic Stokes shifts is superior to that obtained using bulk solvent polarity functions. The dipole moments in the excited state, for all the molecules investigated, are higher than the corresponding values in the ground state. The increase in dipole moment upon excitation has been explained in terms of the nature of emitting state and resonance structure.

Coloring Agents↗
PubMed2001

An experimental and theoretical study of excited-state dipole moments of some flavones using an efficient solvatochromic method based on the solvent polarity parameter, E(N)(T).

The electronic absorption and fluorescence spectra of some biologically active natural flavones have been recorded at room temperature (298 K) in solvents of different polarities. The effects of the solvents upon the spectral properties are discussed. Difference in fluorescence intensity of flavones has been explained on the basis of intersystem crossing and degree of non-planarity calculated theoretically using Austin Model 1 (AM1) method. Excited-state dipole moments have been determined using the solvatochromic method based on the microscopic solvent polarity parameter, E(N)(T). A reasonable agreement has been observed between experimental and AM1 calculated dipole moment changes. Our results are found to be quite reliable in view of the fact that the correlation of the solvatochromic Stokes shifts with microscopic solvent polarity parameter, E(N)(T) is superior to that obtained using bulk solvent polarity functions for all the systems studied here.

Flavonoids↗
PubMed2001

Intramolecular excited-state proton-transfer studies on flavones in different environments.

The absorption and fluorescence spectra of some biologically active flavones have been studied as a function of the acidity (pH/H0) of the solution. Dissociation constants have been determined for the ground and first excited singlet states. The results are compared with those obtained from Forster-Weller calculations. The acidity constants obtained by fluorimetric titration method are in complete agreement (in most of the systems) with ground state data indicating a excited state deactivation prior to prototropic equilibration. Compared to umbelliferones, flavones are only weakly fluorescent in alkaline solution. This behaviour is explained by the small energy difference between the singlet excited state and triplet excited state giving rise to more efficient intersystem crossing. Most of the flavones studied here undergo adiabatic photodissociation in the singlet excited state indicating the formation of an exciplex or a phototautomer.

Flavonoids↗
PubMed2001

Impairment of motor cortex activation and deactivation in Parkinson's disease.

OBJECTIVES: To examine the time course of corticospinal excitability before and after voluntary movement in Parkinson's disease (PD). METHODS: We studied 9 mild PD patients at least 12 h off medications and 11 healthy volunteers in a simple reaction time (RT) paradigm. Suprathreshold transcranial magnetic stimulation was delivered to the left motor cortex at intervals covering the periods before and after movement. RESULTS: PD patients (284+/-90 ms) and normal subjects (282+/-56 ms) had similar median RT. The time courses of both the premovement increase and the postmovement decrease in corticospinal excitability were significantly different between PD patients and normal subjects. The increase in motor-evoked potential (MEP) amplitudes began earlier for PD patients (200 ms before electromyographic (EMG) onset) than for normal subjects (150 ms before EMG onset), but the rate of increase was slower in PD patients than controls. After EMG offset, MEP amplitudes were increased for about 150 ms in normal subjects, but in PD patients this period was prolonged to about 350 ms. CONCLUSIONS: Impairment of motor cortex activation and deactivation is an early feature of PD and may be a physiological correlate of bradykinesia. The normal RT in our patients may be related to the earlier occurrence of the premovement increase in corticospinal excitability compensating for the slower rate of rise.

Adult↗
PubMed2001

Intracellular signaling pathways as a target for the treatment of rheumatoid arthritis.

Recent advances in our understanding of cellular and molecular mechanisms of rheumatoid arthritis have highlighted a critical role for interleukin-1 and tumor necrosis factor alpha. The quest for chemically amenable targets has recently led to the identification and characterization of the intracellular signaling pathways associated with these inflammatory cytokines. In particular the mitogen-activated protein kinase pathway, the nuclear factor kappaB pathway and the cross-talk between these offer several potential therapeutic opportunities for rheumatoid arthritis.

Animals↗
PubMed2001

O(6)-allyl protected deoxyguanosine adducts of polycyclic aromatic hydrocarbons as building blocks for the synthesis of oligonucleotides.

We describe a synthetic strategy for the preparation of oligonucleotides using N(2)-alkylated and O(6)-allyl protected deoxyguanosine phosphoramidite building blocks derived from cis- and trans-opened (+/-)-7beta,8alpha-dihydroxy-9alpha,10alpha-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene and (+/-)-7beta,8alpha-dihydroxy-9beta,10beta-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene and from trans-opened (+/-)-3alpha,4beta-dihydroxy-1alpha,2alpha-epoxy-1,2,3,4-tetrahydrobenzo[c]phenanthrene. The appropriately blocked phosphoramidite building blocks were obtained as mixtures of the cis- and trans-opened diol epoxide adducts upon initial reaction of the diol epoxides with O(6)-allyl-3',5'-di-O-(tert-butyldimethylsilyl)-2'-deoxyguanosine. Key to the present approach is the removal of the O(6)-allyl protecting group utilizing a palladium catalyst prior to release of the constructed oligonucleotide with ammonia from the solid support. The methodology described enables a very convenient access to oligonucleotides containing cis- and trans-N(2)-deoxyguanosine adducts of polycyclic aromatic hydrocarbons in different sequence contexts.

Ammonia↗
PubMed2001

Imbalance of estrogen homeostasis in kidney and liver of hamsters treated with estradiol: implications for estrogen-induced initiation of renal tumors.

Reaction of endogenous catechol estrogen quinones (CE-Q) with DNA may initiate cancer by generation of oncogenic mutations. Treatment of male Syrian golden hamsters with estrogens or 4-catechol estrogens (4-CE), but not 2-CE, induces kidney, but not liver, tumors. The hamster provides an excellent model for studying activation and deactivation (protection) of estrogen metabolites in relation to formation of CE-Q. Several factors can unbalance estrogen homeostasis, thereby increasing the oxidative pathway leading to the carcinogenic CE-3,4-Q. Hamsters were injected with 8 micromol of estradiol (E(2)), and liver and kidney extracts were analyzed for 31 estrogen metabolites, conjugates, and depurinating DNA adducts by HPLC with electrochemical detection. Neither liver nor kidney contained 4-methoxyCE, presumably due to the known inhibition of catechol-O-methyltransferase by 2-CE. More O-methylation of 2-CE was observed in the liver and more formation of CE-Q in the kidney. These results suggest less protective methylation of 2-CE and more pronounced oxidation of CE to CE-Q in the kidney. To investigate this further, hamsters were pretreated with L-buthionine(S,R)-sulfoximine to deplete glutathione levels and then treated with E(2). Compared to the liver, a very low level of CE and methoxyCE was observed in the kidney, suggesting little protective reductase activity. Most importantly, reaction of CE-3,4-Q with DNA to form the depurinating 4-hydroxyE(2)(E(1))-1-N7Gua adducts was detected in the kidney, but not in the liver. Therefore, tumor initiation in the kidney appears to arise from relatively poor methylation of 2-CE and poor reductase activity in the kidney, resulting in high levels of CE-Q. Thus, formation of depurinating DNA adducts by CE-3,4-Q may be the first critical event in the initiation of estrogen-induced kidney tumors.

Animals↗
PubMed2001

Physical ergonomics in low-back pain prevention.

This paper reviews the current state of knowledge regarding the tools used in evaluating the workplace and worker in hopes of preventing low-back injury. Information regarding the current state of expenditure and trends toward ergonomic intervention are discussed. Acknowledgment is made of the increasing shift of responsibility from Compensation Boards to industry, and a review proactive preventative strategies and medical knowledge is included. Current ergonomic assessment tools are reviewed and the role of the Physical Ergonomist is introduced. Suggestions are made regarding the value of current and future approaches in prevention and direction of research.

Biomechanical Phenomena↗
PubMed2001

Work-related musculoskeletal disorders: design as a prevention strategy. A review.

Work-related musculoskeletal disorders are of serious concern to many organizations, including industry, insurance, and health care. They are also of immediate concern to the workers and their families who are adversely affected by these disorders. Work-related musculoskeletal disorders are a substantial source of economic drain to these organizations. Sources of this drain include economic losses incurred from lost or decreased productivity as well as medical treatment and indemnity costs. Therefore, it is within the best interest of these organizations to prevent work-related musculoskeletal disorders from occurring, before they manifest into serious issues of medical, social, and economic concern. The purpose of this paper is to review the concept of work-related musculoskeletal disorders and discuss the basis of their prevention as a primary means of occupational injury and illness management. The principal contributory role of ergonomics/human factors is presented as a viable means of prevention and an important contributor to the comprehensive management of these disorders.

Ergonomics↗
PubMed2001

Acute renal failure due to bilateral matrix renal calculi--a diagnostic dilemma.

We report an unusual case of acute renal failure caused by bilateral matrix calculi. The difficulties in diagnosing the cause of renal failure and the management of the case are discussed. Matrix calculi are rare causes of acute renal failure. Being radiolucent they can be elusive and systematic investigation and a diligent search are required for correct diagnosis and appropriate treatment.

Acute Kidney Injury↗