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Sandeep Verma

Publications and source records attributed to Sandeep Verma.

22 records · Page 2Linked to original sources

Modeling of prebiotic catalysis with adenylated polymeric templates: crystal structure studies and kinetic characterization of template-assisted phosphate ester hydrolysis.

We have synthesized and characterized novel, copper-metalated, polymeric templates that contain adenine nucleobases. These promote hydrolysis of non-natural and natural phosphate ester substrates in a highly efficient and catalytic fashion. The crystal structure of the cooper-containing adenylated monomer reveals the formation of a polymeric array, through coordination to both N1 and N7 atoms. Possible implications of these studies for prebiotic catalysis, involving synergism between adenine and copper ions, are also discussed.

Adenine↗

Pyrazolylcyclotriphosphazene containing pendant polymers: synthesis, characterization, and phosphate ester hydrolysis using a Cu(II)-metalated cross-linked polymeric catalyst.

A multi-pyrazolyl cyclotriphosphazene containing polymerizable group N(3)P(3)(3,5-Me(2)Pz)(5)(O-C(6)H(4)-p-C(6)H(4)-p-CH=CH(2)) (2) has been prepared from the corresponding chloro derivative N(3)P(3)Cl(5)(O-C(6)H(4)-p-C(6)H(4)-p-CH=CH(2)) (1). The X-ray structures of 1 and 2 have been determined. Compound 2 undergoes ready metalation with CuCl(2) to afford N(3)P(3)(3,5-Me(2)Pz)(5)(O-C(6)H(4)-p-C(6)H(4)-p-CH=CH(2)).CuCl(2) (3). Model compound N(3)P(3)(3,5-Me(2)Pz)(5)(O-C(6)H(4)-p-CHO).CuCl(2) (6) has been prepared and characterized by spectroscopy and X-ray crystallography. In this compound, the coordination around copper is distorted trigonal bipyramidal, and the cyclotriphosphazene coordinates in a non-gem N(3) mode. Compound 2 has been copolymerized with divinylbenzene to afford cross-linked multisite coordinating polymer CPPL which is readily metalated with CuCl(2) to afford copper-containing polymer CPPL-Cu. The coordination environment around copper in CPPL-Cu has been evaluated by obtaining its EPR, optical, and IR spectra and comparing them with those of model compounds 3 and 6. The utility of CPPL-Cu as a heterogeneous catalyst has been demonstrated in the phosphate ester hydrolysis involving three model phosphate esters: p-nitrophenyl phosphate (pNPP), bis(p-nitrophenyl) phosphate (bNPP), and 2-(hydroxypropyl)-p-nitrophenyl phosphate (hNPP). In all of these reactions, a significant rate enhancement of ester hydrolysis is observed. Detailed kinetic analyses to evaluate Michaelis-Menten parameters have also been carried out along with experiments to elucidate the effect of pH, solvent, and temperature on the rate of hydrolysis. Recycling experiments on the hydrolysis of pNPP with CPPL-Cu shows that it can be recycled several times over without affecting the rates.

Journal Article↗

4-Vinylbenzyl analogs of adenine and uracil: reactive monomers for nucleobase polymeric resins.

The crystal structures of 9-(4-vinylbenzyl)adenine, C(14)H(13)N(5), and 1-(4-vinylbenzyl)uracil, C(13)H(12)N(2)O(2), are composed of zigzag ribbon-like structures that are stabilized by conventional (N[bond]H...N-type) hydrogen bonds for the former and conventional (N[bond]H...O-type) and non-conventional (C[bond]H...O-type) hydrogen bonds for the latter; the hydrogen-bonding patterns are represented by graph-sets R(2)(2)(9) and R(2)(2)(8), respectively. The adenine and uracil moieties in these alkylated derivatives are planar and are inclined at angles of 84.44 (4) and 79.07 (7) degrees, respectively, with respect to the phenyl rings.

Journal Article↗

In vivo-applied functional RNAs as tools in proteomics and genomics research.

Non-natural, functional RNA molecules, such as short interfering (si) RNAs, aptazymes, maxizymes and intramers, allow modulation of gene function at the mRNA or protein level. This review discusses recent advances made in the expression and application of these functional RNAs and illustrates how engineered, intracellularly active RNAs can serve as promising tools for understanding the function of genes and their protein products or as potential therapeutic agents.

Animals↗