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Santiago Alvarez

Publications and source records attributed to Santiago Alvarez.

At least 19 recordsLinked to original sources

Quantitative geometric descriptions of the belt iron atoms of the iron-molybdenum cofactor of nitrogenase and synthetic iron(II) model complexes.

Six of the seven iron atoms in the iron-molybdenum cofactor of nitrogenase display an unusual geometry, which is distorted from the tetrahedral geometry that is most common in iron-sulfur clusters. This distortion pulls the iron along one C3 axis of the tetrahedron toward a trigonal pyramid. The trigonal pyramidal coordination geometry is rare in four-coordinate transition metal complexes. In order to document this geometry in a systematic fashion in iron(II) chemistry, we have synthesized a range of four-coordinate iron(II) complexes that vary from tetrahedral to trigonal pyramidal. Continuous shape measures are used for a quantitative comparison of the stereochemistry of the Fe atoms in the iron-molybdenum cofactor with those of the presently and previously reported model complexes, as well as with those in polynuclear iron-sulfur compounds. This understanding of the iron coordination geometry is expected to assist in the design of synthetic analogues for intermediates in the nitrogenase catalytic cycle.

Iron↗

Chelating dialkoxide titanium complex: a versatile building block for the construction of heterometallic derivatives.

The heterometallic complex [TiCp*(O(2)Bz)(2)AlMe(2)] (2) has been synthesised by reaction of [TiCp*(O(2)Bz)(OBzOH)] (1) with AlMe(3) (Cp*=eta(5)-C(5)Me(5); Bz=benzyl). Complex 1 reacts with HOTf to yield the cationic derivative [TiCp*(OBzOH)(2)]OTf (3) (HOTf=HSO(3)CF(3)). Compound 3 reacts with [{M(mu-OH)(cod)}(2)] (M=Rh, Ir; cod=cyclooctadiene) to render the early-late heterometallic complexes [TiCp*(O(2)Bz)(2){M(cod)}(2)]OTf (M=Rh (4); Ir (5)). The molecular structure of complex 4 has been established by single-crystal X-ray diffraction studies.

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Magnetostructural correlations in polynuclear complexes: the Fe4 butterflies.

Theoretical methods based on density functional theory have been employed to analyze the exchange interactions in Fe4 butterfly complexes. Three exchange coupling constants, calculated using a hybrid functional, provide an accurate description of the experimental magnetic susceptibility. The largest coupling constant corresponds to the interaction between the central and external iron atoms and presents a strong dependence on the Fe-O bond distance and the Fe-O-Fe angle of the central Fe2O2 core. An excellent linear correlation is found between such exchange coupling constants and a function of the spin population of the iron atoms, that is related with the square of the overlap of the "magnetic orbitals", according to the Kahn-Briat model.

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Effects of tris(pyrazolyl)borato ligand substituents on dioxygen activation and stabilization by copper compounds.

Dinuclear [Cu2(mu-O)2(Tp(R,R')2] complexes, analogues of the active site of oxyhemocyanin, are theoretically studied, and the effect of the substituents of the tris(pyrazolyl)borate ligands, Tp(R,R'), is analyzed. Density functional theory calculations reveal that the type of bridging oxygen, peroxo, or bisoxo is strongly influenced by the nature and position of the R substituents because of variable substituent...bridging oxygen interactions, as well as electronic effects. The electronic effects of ligands at the 5 position are not significant, but peroxo complexes are favored by electron-withdrawing groups at the 3 position while bisoxo ones are strongly sterically disfavored.

Binding Sites↗

Shape and spin state in four-coordinate transition-metal complexes: the case of the d(6) configuration.

Generalized polyhedral interconversion coordinates are defined within the framework of Avnir's continuous shape measures. The application of such interconversion coordinates to the study of the potential energy surfaces that define the stereochemical choice in four-coordinate transition metal complexes with different spin states is presented, and the correlation between potential energy curves and distribution of experimental structures along the tetrahedron to square interconversion path is shown for the case of the d(6) transition-metal complexes.

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Nesting of fullerenes and Frank-Kasper polyhedra.

The duality relationship between fullerenes and Frank-Kasper polyhedra suggests that these two families of polyhedra appear nested in solid state structures. Magic numbers, described by simple mathematical relationships, identify four families of fullerenes with tetrahedral and icosahedral symmetries.

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Theoretical study of the exchange coupling in a Ni12 single-molecule magnet.

The exchange interactions in a Ni12 complex have been studied by using theoretical methods based on density functional theory. The calculated J values reproduce correctly the S = 12 ground state of this system found experimentally and indicate the presence of three different exchange interaction pathways, in agreement with previous inelastic neutron scattering experiments. The three interactions are ferromagnetic, one of them corresponding to a second-neighbor interaction through a syn-anti acetato ligand. A magnetostructural correlation was found for such coupling, confirming the ferromagnetic nature of such an interaction. Our results are in excellent agreement with two new fittings of the experimental magnetic susceptibility data. The spin density distribution of the Ni12 complex is also reported and discussed.

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A family of ferro- and antiferromagnetically coupled decametallic chromium(III) wheels.

The synthesis and crystal structures of a family of decametallic Cr(III) "molecular wheels" are reported, namely [Cr10(OR)20(O2CR')10] [R' = Me, R = Me (1), Et (2); R' = Et, R = Me (3), Et (4); R' = CMe3, R = Me (5), Et (6)]. Magnetic studies on 1-6 reveal a remarkable dependence of the magnetic behaviour on the nature of R. In each pair of complexes with a common carboxylate (R') the nearest neighbour CrCr magnetic exchange coupling is more antiferromagnetic for the ethoxide-bridged (R = Et) cluster than for the methoxide analogue. In complexes 2, 4 and 6 the overall coupling is weakly antiferromagnetic resulting in diamagnetic (S = 0) ground states for the cluster, whilst in 1 and 5 it is weakly ferromagnetic thus resulting in very high-spin ground states. This ground state has been probed directly in the perdeuterated version of 1 ([D]1) by inelastic neutron scattering experiments, and these support the S = 15 ground state expected for ferromagnetic coupling of ten Cr(III) ions, and they also indicate that a single J-value model is inadequate. The ground state of 5 is large but not well defined. The trends in J on changing R are further supported by density functional calculations on 1-6, which are in excellent agreement with experiment. The very large changes in the nature of the ground state between 1 and 2, and 5 and 6 are the result of relatively small changes in J that happen to cross J = 0, hence changing the sign of J.

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Magnetic communication through functionalized nanotubes: a theoretical study.

Functionalized nanotubes are good candidates to promote communication between paramagnetic centers at large distances through a highly delocalized pi system. Our study using theoretical methods based on density functional theory predicts the presence of surprisingly strong coupling at very large distances for this kind of system. To reach such strong couplings the system has to fulfill two conditions, the presence of highly charged metal cations and a metallic character of the nanotube.

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About the calculation of exchange coupling constants using density-functional theory: the role of the self-interaction error.

The effect of the correction of the self-interaction error on the calculation of exchange coupling constants with methods based on density-functional theory has been tested in simple model systems. The inclusion of the self-interaction correction cancels the nondynamical correlation energy contributions simulated by the commonly used functionals. Hence, such correction should be important in the accurate determination of exchange coupling constants. We have also tested several recent functionals to calculate exchange coupling constants in transition-metal complexes, such as meta-GGA functionals or new formulations of hybrid functionals. The influence of the basis set and of the use of pseudopotentials on the calculated J values has also been evaluated for a Fe(III) dinuclear complex in which the paramagnetic centers bear several unpaired electrons.

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[Cu3(mu-S)2]3+ clusters supported by N-donor ligands: progress toward a synthetic model of the catalytic site of nitrous oxide reductase.

By treating Cu(I) complexes of neutral, bidentate N-donor ligands with S8, clusters with novel delocalized mixed-valence [Cu3(mu-S)2]3+ cores have been isolated. X-ray crystal structures and UV-vis and resonance Raman spectral features of these clusters reveal similarities to the tetracopper-sulfide "CuZ" site in nitrous oxide reductase. A delocalized S = 1 ground state for the mixed-valent CuIIICu2II cores is supported by the observation of high symmetry in the X-ray structures and 10-line hyperfine features arising from coupling to three equivalent Cu ions in EPR spectra obtained at room temperature (shown) and 10 K. The delocalization we observe contrasts with the localization reported previously for a [Cu3(mu-O)2]3+ analogue (Root, D. E.; Henson, M. J.; Machonkin, T.; Mukherjee, P.; Stack, T. D. P.; Solomon, E. I. J. Am. Chem. Soc. 1998, 120, 4982), which we rationalized through DFT calculations.

Catalysis↗

Magnetic properties of cyano-bridged Ln3+-M3+ complexes. Part I: trinuclear complexes (Ln3+ = La, Ce, Pr, Nd, Sm; M3+ = FeLS, Co) with bpy as blocking ligand.

The reaction of Ln(NO3)3(aq) with K3[Fe(CN)6] or K3[Co(CN)6] and 2,2'-bipyridine in water/ethanol led to eight trinuclear complexes: trans-[M(CN)4(mu-CN)2{Ln(H2O)4(bpy)2}2][M(CN)6].8H2O (M = Fe3+ or Co3+, Ln = La3+, Ce3+, Pr3+, Nd3+, and Sm3+). The structures for the eight complexes [La2Fe] (1), [Ce2Fe] (2), [Pr2Fe] (3), [Nd2Fe] (4), [Ce2Co] (5), [Pr2Co] (6), [Nd2Co] (7), and [Sm2Co] (8) have been solved; they crystallize in the triclinic space group P and are isomorphous. They exhibit a supramolecular 3D architecture through hydrogen bonding and pi-pi stacking interactions. A stereochemical study of the nine-vertex polyhedra of the lanthanide ions, based on continuous shape measures, is presented. No significant magnetic interaction was found between the lanthanide(III) and the iron(III) ions.

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Magnetism of cyano-bridged Ln3+-M3+ complexes. Part II: one-dimensional complexes (Ln3+ = Eu, Tb, Dy, Ho, Er, Tm; M3+ = Fe or Co) with bpy as blocking ligand.

The reaction of Ln(NO3)3(aq) with K3[Fe(CN)6] or K3[Co(CN)6] and 2,2'-bipyridine in water/ethanol led to 13 one-dimensional complexes: trans-[M(CN)4(mu-CN)2Ln(H2O)4(bpy)]n.4nH2O.1.5nbpy (Ln = Eu3+, Tb3+, Dy3+, Ho3+, Er3+, Tm3+, Lu3+; M = Fe3+, Co3+). The structures for [EuFe]n (1), [TbFe]n (2), [DyFe]n (3), [HoFe]n (4), [ErFe]n (5), [TmFe]n (6), [LuFe]n (7), [EuCo]n (8), [TbCo]n (9), [DyCo]n (10), [HoCo]n (11), [ErCo]n (12), and [TmCo]n (13) have been solved: they crystallize in the triclinic space group P and are isomorphous. They exhibit a supramolecular architecture created by the interplay of coordinative, hydrogen bonding, and pi-pi interactions. A stereochemical study of the eight-vertex polyhedra of the lanthanide ions, based on continuous shape measures, is presented. The Ln3+-Fe3+ interaction is antiferromagnetic in [DyFe]n and [TbFe]n. For [EuFe]n, [HoFe]n, [ErFe]n, and [TmFe]n, there is no sign of any significant interaction. The magnetic behavior of [DyFe]n suggests the onset of weak long-range ferromagnetic ordering at 2.5 K.

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Density functional study of exchange coupling constants in single-molecule magnets: the Fe8 complex.

Theoretical methods based on density functional theory have been employed to analyze the exchange interactions in a Fe8 complex with single-molecule magnet behavior. The four exchange coupling constants, calculated by using a hybrid functional, provide an accurate description of the experimental magnetic susceptibility and excitation energies. This complex has been also employed to check the accuracy of classical and quantum Monte Carlo methods to obtain macroscopic properties by comparison with the results obtained via exact diagonalization of the Hamiltonian matrix.

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Exchange coupling in mu-aqua:mu-oxo vs. di-mu-hydroxo dinuclear Cu(II) compounds: a density functional study.

Theoretical methods based on density functional theory have been applied to study the differences in exchange coupling between the di-mu-hydroxo and mu-aqua:mu-oxo tautomers of a dinuclear Cu(II) complex. The calculations indicate that the two compounds are totally different from a magnetic point of view. The transfer of one proton from one of the two hydroxo bridges to the other leaves an asymmetric structure with only one effective exchange pathway through the oxo bridge. The coordinated water molecule and an associated perchlorate counterion, although not directly involved in the exchange coupling, play an important role in the magnetic properties of this compound since their presence is crucial in the determination of the geometrical details of the Cu-O(ox)-Cu linkage and hence in the exchange coupling between the copper atoms.

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Theoretical study of the magnetic behavior of ferric wheels.

Calculations of exchange coupling constants (J) based on density functional theory for eight complete, nonmodeled ferric wheels have been performed, and a comparison with the values obtained from magnetic susceptibility data is presented. The calculated J values obtained with a generalized-gradient approximation (GGA) functional are in good agreement with the experiment probably because the inclusion of pseudopotentials partially compensates the overestimation of the spin delocalization. The magnetostructural correlation obtained shows a strong dependence of the exchange coupling on both the Fe-O-Fe bond angle and the Fe-O bond distance. This correlation holds for both the ferric wheels and the alkoxo-bridged Fe(III) dinuclear complexes reported in the literature.

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