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Scott Makeig

Publications and source records attributed to Scott Makeig.

14 recordsLinked to original sources
PubMed2006

Enhanced detection of artifacts in EEG data using higher-order statistics and independent component analysis.

Detecting artifacts produced in EEG data by muscle activity, eye blinks and electrical noise is a common and important problem in EEG research. It is now widely accepted that independent component analysis (ICA) may be a useful tool for isolating artifacts and/or cortical processes from electroencephalographic (EEG) data. We present results of simulations demonstrating that ICA decomposition, here tested using three popular ICA algorithms, Infomax, SOBI, and FastICA, can allow more sensitive automated detection of small non-brain artifacts than applying the same detection methods directly to the scalp channel data. We tested the upper bound performance of five methods for detecting various types of artifacts by separately optimizing and then applying them to artifact-free EEG data into which we had added simulated artifacts of several types, ranging in size from thirty times smaller (-50 dB) to the size of the EEG data themselves (0 dB). Of the methods tested, those involving spectral thresholding were most sensitive. Except for muscle artifact detection where we found no gain of using ICA, all methods proved more sensitive when applied to the ICA-decomposed data than applied to the raw scalp data: the mean performance for ICA was higher and situated at about two standard deviations away from the performance distribution obtained on raw data. We note that ICA decomposition also allows simple subtraction of artifacts accounted for by single independent components, and/or separate and direct examination of the decomposed non-artifact processes themselves.

Algorithms↗
PubMed2006

Imaging human EEG dynamics using independent component analysis.

This review discusses the theory and practical application of independent component analysis (ICA) to multi-channel EEG data. We use examples from an audiovisual attention-shifting task performed by young and old subjects to illustrate the power of ICA to resolve subtle differences between evoked responses in the two age groups. Preliminary analysis of these data using ICA suggests a loss of task specificity in independent component (IC) processes in frontal and somatomotor cortex during post-response periods in older as compared to younger subjects, trends not detected during examination of scalp-channel event-related potential (ERP) averages. We discuss possible approaches to component clustering across subjects and new ways to visualize mean and trial-by-trial variations in the data, including ERP-image plots of dynamics within and across trials as well as plots of event-related spectral perturbations in component power, phase locking, and coherence. We believe that widespread application of these and related analysis methods should bring EEG once again to the forefront of brain imaging, merging its high time and frequency resolution with enhanced cm-scale spatial resolution of its cortical sources.

Brain↗
PubMed2006

Mapping single-trial EEG records on the cortical surface through a spatiotemporal modality.

Event-related potentials (ERPs) induced by visual perception and cognitive tasks have been extensively studied in neuropsychological experiments. ERP activities time-locked to stimulus presentation and task performance are often observed separately at individual scalp channels based on averaged time series across epochs and experimental subjects. An analysis using averaged EEG dynamics could discount information regarding interdependency between ongoing EEG and salient ERP features. Advanced tools such as independent component analysis (ICA) have been developed for decomposing collections of single-trial EEG records into separate features. Those features (or independent components) can then be mapped onto the cortical surface using source localization algorithms to visualize brain activation maps and to study between-subject consistency. In this study, we propose a statistical framework for estimating the time course of spatiotemporally independent EEG components simultaneously with their cortical distributions. Within this framework, we implemented Bayesian spatiotemporal analysis for imaging the sources of EEG features on the cortical surface. The framework allows researchers to include prior knowledge regarding spatial locations as well as spatiotemporal independence of different EEG sources. The use of the Electromagnetic Spatiotemporal ICA (EMSICA) method is illustrated by mapping event-related EEG dynamics induced by events in a visual two-back continuous performance task. The proposed method successfully identified several interesting components with plausible corresponding cortical activation topographies, including processes contributing to the late positive complex (LPC) located in central parietal, frontal midline, and anterior cingulate cortex, to atypical mu rhythms associated with the precentral gyrus, and to the central posterior alpha activity in the precuneus.

Artifacts↗
PubMed2006

Information-based modeling of event-related brain dynamics.

We discuss the theory and practice of applying independent component analysis (ICA) to electroencephalographic (EEG) data. ICA blindly decomposes multi-channel EEG data into maximally independent component processes (ICs) that typically express either particularly brain generated EEG activities or some type of non-brain artifacts (line or other environmental noise, eye blinks and other eye movements, or scalp or heart muscle activity). Each brain and non-brain IC is identified with an activity time course (its 'activation') and a set of relative strengths of its projections (by volume conduction) to the recording electrodes (its 'scalp map'). Many non-articraft IC scalp maps strongly resemble the projection of a single dipole, allowing the location and orientation of the best-fitting equivalent dipole (or other source model) to be easily determined. In favorable circumstances, ICA decomposition of high-density scalp EEG data appears to allow concurrent monitoring, with high time resolution, of separate EEG activities in twenty or more separate cortical EEG source areas. We illustrate the differences between ICA and traditional approaches to EEG analysis by comparing time courses and mean event related spectral perturbations (ERSPs) of scalp channel and IC data. Comparing IC activities across subjects necessitates clustering of similar Ics based on common dynamic and/or spatial features. We discuss and illustrate such a component clustering strategy. In sum, continued application of ICA methods in EEG research should continue to yield new insights into the nature and role of the complex macroscopic cortical dynamics captured by scalp electrode recordings.

Brain↗
PubMed2005

Frontal midline EEG dynamics during working memory.

We show that during visual working memory, the electroencephalographic (EEG) process producing 5-7 Hz frontal midline theta (fmtheta) activity exhibits multiple spectral modes involving at least three frequency bands and a wide range of amplitudes. The process accounting for the fmtheta increase during working memory was separated from 71-channel data by clustering on time/frequency transforms of components returned by independent component analysis (ICA). Dipole models of fmtheta component scalp maps were consistent with their generation in or near dorsal anterior cingulate cortex. From trial to trial, theta power of fmtheta components varied widely but correlated moderately with theta power in other frontal and left temporal processes. The weak mean increase in frontal midline theta power with increasing memory load, produced entirely by the fmtheta components, largely reflected progressively stronger theta activity in a relatively small proportion of trials. During presentations of letter series to be memorized or ignored, fmtheta components also exhibited 12-15 Hz low-beta activity that was stronger during memorized than during ignored letter trials, independent of letter duration. The same components produced a brief 3-Hz burst 500 ms after onset of the Probe letter following each letter sequence. A new decomposition method, log spectral ICA, applied to normalized log time/frequency transforms of fmtheta component Memorize-letter trials, showed that their low-beta activity reflected harmonic energy in continuous, sharp-peaked theta wave trains as well as independent low-beta bursts. Possibly, the observed fmtheta process variability may index dynamic adjustments in medial frontal cortex to trial-specific behavioral context and task demands.

Adult↗
PubMed2005

What is novel in the novelty oddball paradigm? Functional significance of the novelty P3 event-related potential as revealed by independent component analysis.

To better understand whether voluntary attention affects how the brain processes novel events, variants of the auditory novelty oddball paradigm were presented to two different groups of human volunteers. One group of subjects (n=16) silently counted rarely presented 'infrequent' tones (p=0.10), interspersed with 'novel' task-irrelevant unique environmental sounds (p=0.10) and frequently presented 'standard' tones (p=0.80). A second group of subjects (n=17) silently counted the 'novel' environmental sounds, the 'infrequent' tones now serving as the task-irrelevant deviant events. Analysis of event-related potentials (ERPs) recorded from 63 scalp channels suggested a spatiotemporal overlap of fronto-central novelty P3 and centro-parietal P3 (P3b) ERP features in both groups. Application of independent component analysis (ICA) to concatenated single trials revealed two independent component clusters that accounted for portions of the novelty P3 and P3b response features, respectively. The P3b-related ICA cluster contributed to the novelty P3 amplitude response to novel environmental sounds. In contrast to the scalp ERPs, the amplitude of the novelty P3 related cluster was not affected by voluntary attention, that is, by the target/nontarget distinction. This result demonstrates the usefulness of ICA for disentangling spatiotemporally overlapping ERP processes and provides evidence that task irrelevance is not a necessary feature of novelty processing.

Acoustic Stimulation↗
PubMed2004

Electroencephalographic brain dynamics following manually responded visual targets.

Scalp-recorded electroencephalographic (EEG) signals produced by partial synchronization of cortical field activity mix locally synchronous electrical activities of many cortical areas. Analysis of event-related EEG signals typically assumes that poststimulus potentials emerge out of a flat baseline. Signals associated with a particular type of cognitive event are then assessed by averaging data from each scalp channel across trials, producing averaged event-related potentials (ERPs). ERP averaging, however, filters out much of the information about cortical dynamics available in the unaveraged data trials. Here, we studied the dynamics of cortical electrical activity while subjects detected and manually responded to visual targets, viewing signals retained in ERP averages not as responses of an otherwise silent system but as resulting from event-related alterations in ongoing EEG processes. We applied infomax independent component analysis to parse the dynamics of the unaveraged 31-channel EEG signals into maximally independent processes, then clustered the resulting processes across subjects by similarities in their scalp maps and activity power spectra, identifying nine classes of EEG processes with distinct spatial distributions and event-related dynamics. Coupled two-cycle postmotor theta bursts followed button presses in frontal midline and somatomotor clusters, while the broad postmotor "P300" positivity summed distinct contributions from several classes of frontal, parietal, and occipital processes. The observed event-related changes in local field activities, within and between cortical areas, may serve to modulate the strength of spike-based communication between cortical areas to update attention, expectancy, memory, and motor preparation during and after target recognition and speeded responding.

Adult↗
PubMed2004

EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis.

We have developed a toolbox and graphic user interface, EEGLAB, running under the crossplatform MATLAB environment (The Mathworks, Inc.) for processing collections of single-trial and/or averaged EEG data of any number of channels. Available functions include EEG data, channel and event information importing, data visualization (scrolling, scalp map and dipole model plotting, plus multi-trial ERP-image plots), preprocessing (including artifact rejection, filtering, epoch selection, and averaging), independent component analysis (ICA) and time/frequency decompositions including channel and component cross-coherence supported by bootstrap statistical methods based on data resampling. EEGLAB functions are organized into three layers. Top-layer functions allow users to interact with the data through the graphic interface without needing to use MATLAB syntax. Menu options allow users to tune the behavior of EEGLAB to available memory. Middle-layer functions allow users to customize data processing using command history and interactive 'pop' functions. Experienced MATLAB users can use EEGLAB data structures and stand-alone signal processing functions to write custom and/or batch analysis scripts. Extensive function help and tutorial information are included. A 'plug-in' facility allows easy incorporation of new EEG modules into the main menu. EEGLAB is freely available (http://www.sccn.ucsd.edu/eeglab/) under the GNU public license for noncommercial use and open source development, together with sample data, user tutorial and extensive documentation.

Computer Simulation↗
PubMed2004

Frontal midline theta and the error-related negativity: neurophysiological mechanisms of action regulation.

OBJECTIVE: The error-related negativity (ERN) is an event-related potential (ERP) peak occurring between 50 and 100 ms after the commission of a speeded motor response that the subject immediately realizes to be in error. The ERN is believed to index brain processes that monitor action outcomes. Our previous analyses of ERP and EEG data suggested that the ERN is dominated by partial phase-locking of intermittent theta-band EEG activity. In this paper, this possibility is further evaluated. METHODS: The possibility that the ERN is produced by phase-locking of theta-band EEG activity was examined by analyzing the single-trial EEG traces from a forced-choice speeded response paradigm before and after applying theta-band (4-7 Hz) filtering and by comparing the averaged and single-trial phase-locked (ERP) and non-phase-locked (other) EEG data. Electrical source analyses were used to estimate the brain sources involved in the generation of the ERN. RESULTS: Beginning just before incorrect button presses in a speeded choice response paradigm, midfrontal theta-band activity increased in amplitude and became partially and transiently phase-locked to the subject's motor response, accounting for 57% of ERN peak amplitude. The portion of the theta-EEG activity increase remaining after subtracting the response-locked ERP from each trial was larger and longer lasting after error responses than after correct responses, extending on average 400 ms beyond the ERN peak. Multiple equivalent-dipole source analysis suggested 3 possible equivalent dipole sources of the theta-bandpassed ERN, while the scalp distribution of non-phase-locked theta amplitude suggested the presence of additional frontal theta-EEG sources. CONCLUSIONS: These results appear consistent with a body of research that demonstrates a relationship between limbic theta activity and action regulation, including error monitoring and learning.

Adult↗
PubMed2004

Mining event-related brain dynamics.

This article provides a new, more comprehensive view of event-related brain dynamics founded on an information-based approach to modeling electroencephalographic (EEG) dynamics. Most EEG research focuses either on peaks 'evoked' in average event-related potentials (ERPs) or on changes 'induced' in the EEG power spectrum by experimental events. Although these measures are nearly complementary, they do not fully model the event-related dynamics in the data, and cannot isolate the signals of the contributing cortical areas. We propose that many ERPs and other EEG features are better viewed as time/frequency perturbations of underlying field potential processes. The new approach combines independent component analysis (ICA), time/frequency analysis, and trial-by-trial visualization that measures EEG source dynamics without requiring an explicit head model.

Action Potentials↗
PubMed2003

Complex independent component analysis of frequency-domain electroencephalographic data.

Independent component analysis (ICA) has proven useful for modeling brain and electroencephalographic (EEG) data. Here, we present a new, generalized method to better capture the dynamics of brain signals than previous ICA algorithms. We regard EEG sources as eliciting spatio-temporal activity patterns, corresponding to, e.g. trajectories of activation propagating across cortex. This leads to a model of convolutive signal superposition, in contrast with the commonly used instantaneous mixing model. In the frequency-domain, convolutive mixing is equivalent to multiplicative mixing of complex signal sources within distinct spectral bands. We decompose the recorded spectral-domain signals into independent components by a complex infomax ICA algorithm. First results from a visual attention EEG experiment exhibit: (1). sources of spatio-temporal dynamics in the data, (2). links to subject behavior, (3). sources with a limited spectral extent, and (4). a higher degree of independence compared to sources derived by standard ICA.

Brain Mapping↗
PubMed2003

EEG changes accompanying learned regulation of 12-Hz EEG activity.

We analyzed 15 sessions of 64-channel electroencephalographic (EEG) data recorded from a highly trained subject during sessions in which he attempted to regulate power at 12 Hz over his left- and right-central scalp to control the altitude of a cursor moving toward target boxes placed at the top-, middle-, or bottom-right of a computer screen. We used infomax independent component analysis (ICA) to decompose 64-channel EEG data from trials in which the subject successfully up- or down-regulated the measured EEG signals. Applying time-frequency analysis to the time courses of activity of several of the resulting 64 independent EEG components revealed that successful regulation of the measured activity was accompanied by extensive, asymmetrical changes in power and coherence, at both nearby and distant frequencies, in several parts of cortex. A more complete understanding of these phenomena could help to explain the nature and locus of learned regulation of EEG rhythms and might also suggest ways to further optimize the performance of brain-computer interfaces.

Adaptation, Physiological↗
PubMed2002

Single-trial variability in event-related BOLD signals.

Most current analysis methods for fMRI data assume a priori knowledge of the time course of the hemodynamic response (HR) to experimental stimuli or events in brain areas of interest. In addition, they typically assume homogeneity of both the HR and the non-HR "noise" signals, both across brain regions and across similar experimental events. When HRs vary unpredictably, from area to area or from trial to trial, an alternative approach is needed. Here, we use Infomax independent component analysis (ICA) to detect and visualize variations in single-trial HRs in event-related fMRI data. Six subjects participated in four fMRI sessions each in which ten bursts of 8-Hz flickering-checkerboard stimulation were presented for 0.5-s (short) or 3-s (long) durations at 30-s intervals. Five axial slices were acquired by a Bruker 3-T magnetic resonance imager at interscan intervals of 500 ms (TR). ICA decomposition of the resulting blood oxygenation level-dependent (BOLD) data from each session produced an independent component active in primary visual cortex (V1) and, in several sessions, another active in medial temporal cortex (MT/V5). Visualizing sets of BOLD response epochs with novel BOLD-image plots demonstrated that component HRs varied substantially and often systematically across trials as well as across sessions, subjects, and brain areas. Contrary to expectation, in four of the six subjects the V1 component HR contained two positive peaks in response to short-stimulus bursts, while components with nearly identical regions of activity in long-stimulus sessions from the same subjects were associated with single-peaked HRs. Thus, ICA combined with BOLD-image visualization can reveal dramatic and unforeseen HR variations not apparent to researchers analyzing their data with event-related response averaging and fixed HR templates.

Adult↗