PubMed Health⌕ Search

Biomedical subjects

Shiyu Wang

Publications and source records attributed to Shiyu Wang.

6 recordsLinked to original sources
PubMed2026

Research on multi-trait genome association study method based on Shannon information entropy.

BACKGROUND: Genetic analysis of complex traits is crucial for elucidating disease mechanisms and biological inheritance processes. However, traditional Genome-wide Association Study (GWAS) for single trait often fail to capture the synergistic effects of genetic loci on multiple traits. METHODS: This study proposes a method for analyzing the association between multiple traits and gene regions based on Shannon information entropy. Innovatively, Shannon information entropy is introduced to integrate gene region information as genetic entropy, thereby constructing an Inverse Shannon Entropy-Multi-Trait Association Analysis of Gene Region genetic model (InvSE-MTAGR). Furthermore, a partial regression test is applied to the model to establish the Inverse Partial Shannon Entropy-Multi-Trait Association Analysis of Gene Region method (InvPSE-MTAGR). When performing multi-trait analysis with InvSE-MTAGR, the method achieved statistical significance by accumulating minor effects, thereby enhancing the ability to identify pleiotropic gene regions. RESULTS: The simulation results showed that the proposed multi-trait gene region association analysis method performed well in terms of both Type I error rate control and statistical power. Leveraging tomato and sorghum datasets for validation, the proposed multi-trait gene region association analysis method based on Shannon information entropy accurately pinpointed most of the gene regions harboring candidate genes. CONCLUSION: The study reveals the advantage of multi-trait method in integrating weak-effect pleiotropic signals and capturing the correlation among traits, which provides an efficient theoretical tool for dynamic analysis of complex multi-trait genetic networks and multi-target collaborative breeding of crops.

Genome-Wide Association Study↗
PubMed2026

Efficacy of NAs in combination with Peg-IFN for functional cure in patients with CHB: a meta-analysis of RCTs.

BACKGROUND: The goal of treating chronic hepatitis B (CHB) is to achieve functional cure. We aimed to evaluate the efficacy of the combination of nucleoside (acid) analogues (NAs) and pegylated interferon (Peg-IFN) on the functional cure of CHB patients at the EOT and at the EOF. METHOD: PubMed, Embase, and Web of Science were searched systematically up to March 15, 2025. Sixteen RCTs on CHB patients receiving combination or monotherapy were included. RESULT: Compared with NAs treatment, the NAs combined with Peg-IFN treatment group significantly improved HBsAg clearance rate (RR: 14.05, 95% CI 6.13-32.20) and HBsAg seroconversion rate (RR: 12.82, 95% CI 5.08-32.33) at the EOT. Moreover, compared with NAs treatment, the NAs combined with Peg-IFN treatment group significantly improved HBsAg clearance rate (RR: 7.70, 95% CI 4.24-13.98), HBsAg seroconversion rate (RR: 11.93, 95% CI 5.14-27.67) at the EOF. However, compared with Peg-IFN monotherapy, the combination therapy group did not show any improvement in HBsAg clearance rate, HBsAg seroconversion rate, and the rate of qHBsAg decrease > 1 log10 IU/mL at the EOT and the EOF. Moreover, in terms of safety, the Peg-IFN monotherapy group showed more ALT flares (ALT > 5 × ULN) during the treatment process. CONCLUSION: Compared with NAs therapy, Peg-IFN combined with NAs therapy significantly improves functional cure rate. However, combination therapy shows no additional advantage over Peg-IFN monotherapy in achieving functional cure. The Peg-IFN monotherapy group has a higher incidence of ALT flares than the combination therapy group.

Humans↗
PubMed2005

Different signaling and cell death roles of heterotrimeric G protein alpha and beta subunits in the Arabidopsis oxidative stress response to ozone.

Arabidopsis thaliana plants with null mutations in the genes encoding the alpha and beta subunits of the single heterotrimeric G protein are less and more sensitive, respectively, to O3 damage than wild-type Columbia-0 plants. The first peak of the bimodal oxidative burst elicited by O3 in wild-type plants is almost entirely missing in both mutants. The late peak is normal in plants lacking the Gbeta protein but missing in plants lacking the Galpha protein. Endogenous reactive oxygen species (ROS) are first detectable in chloroplasts of leaf epidermal guard cells. ROS production in adjacent cells is triggered by extracellular ROS signals produced by guard cell membrane-associated NADPH oxidases encoded by the AtrbohD and AtrbohF genes. The late, tissue damage-associated component of the oxidative burst requires only the Galpha protein and arises from multiple cellular sources. The early component of the oxidative burst, arising primarily from chloroplasts, requires signaling through the heterotrimer (or the Gbetagamma complex) and is separable from Galpha-mediated activation of membrane-bound NADPH oxidases necessary for both intercellular signaling and cell death.

Arabidopsis↗
PubMed2003

Heat effect on the structure and activity of the recombinant glutamate dehydrogenase from a hyperthermophilic archaeon Pyrococcus horikoshii.

Glutamate dehydrogenase from Pyrococcus horikoshii (Pho-GDH) was cloned and overexpressed in Escherichia coli. The cloned enzyme with His-tag was purified to homogeneity by affinity chromatography and shown to be a hexamer enzyme of 290+/-8 kDa (subunit mass 48 kDa). Its optimal pH and temperature were 7.6 and 90 degrees C, respectively. The purified enzyme has outstanding thermostability (the half-life for thermal inactivation at 100 degrees C was 4 h). The enzyme shows strict specificity for 2-oxoglutarate and L-glutamate and requires NAD(P)H and NADP as cofactors but it does not reveal activity on NAD as cofactor. K(m) values of the recombinant enzyme are comparable for both substrates: 0.2 mM for L-glutamate and 0.53 mM for 2-oxoglutarate. The enzyme was activated by heating at 80 degrees C for 1 h, which was accompanied by the formation of its active conformation. Circular dichroism and fluorescence spectra show that the active conformation is heat-inducible and time-dependent.

Amino Acid Sequence↗
PubMed2002

Effect of nonoperative treatment on the outcome of patients with posttraumatic hydrocephalus.

OBJECTIVE: To compare the outcome of non-operative treatment with the outcome of surgical intraventricular drainage for patients with posttraumatic hydrocephalus including complications, mortality and favorable outcome. METHODS: Thirty-nine patients were assigned to a nonoperative treatment group and 38 patents to a surgical intraventricular drainage group. Each patient's outcome was evaluated 3 years after treatment by using Glasgow Outcome Scale. RESULTS: In the nonoperative treatment group the rate of favor able outcome (good recovery or mild disability) was 89.74% (35 of 39 patients) and the mortality was 2.56% (1 of 39 patients). In the surgical intraventricular drainage group the rate of favorable outcome was 71.05% (27 of 38 patients) and the mortality was 13.16% (5 of 38 patients; P<0.05). Mortality was not significantly different between the two groups. CONCLUSIONS: Nonoperative treatment may be better than surgical intraventricular drainage for patients with posttraumatic hydrocephalus.

Adult↗