Biomedical subjects

Sourav Banerjee

Publications and source records attributed to Sourav Banerjee.

3 recordsLinked to original sources

PubMed2006

Elastic wave propagation in sinusoidally corrugated waveguides.

The ultrasonic wave propagation in sinusoidally corrugated waveguides is studied in this paper. Periodically corrugated waveguides are gaining popularity in the field of vibration control and for designing structures with desired acoustic band gaps. Currently only numerical method (Boundary Element Method or Finite Element Method) based packages (e.g., PZFlex) are in principle capable of modeling ultrasonic fields in complex structures with rapid change of curvatures at the interfaces and boundaries but no analyses have been reported. However, the packages are very CPU intensive; it requires a huge amount of computation memory and time for its execution. In this paper a new semi-analytical technique called Distributed Point Source Method (DPSM) is used to model the ultrasonic field in sinusoidally corrugated waveguides immersed in water where the interface curvature changes rapidly. DPSM results are compared with analytical solutions. It is found that when a narrow ultrasonic beam hits the corrugation peaks at an angle, the wave propagates in the backward direction in waveguides with high corrugation depth. However, in waveguides with small corrugation the wave propagates in the forward direction. The forward and backward propagation phenomenon is found to be independent of the signal frequency and depends on the degree of corrugation.

Journal Article↗

PubMed2004

General transcriptional coactivator PC4 activates p53 function.

The function of p53 is modulated by several transcriptional coactivators that regulate its tumor suppressor activity. Here we report that human transcriptional coactivator PC4 enhances the DNA binding of p53 to its cognate site in vitro and directly interacts with p53 in vivo. In vitro interaction studies demonstrated that the C-terminal 30 amino acids (364 to 393) of p53 strongly interact with PC4. Surprisingly, PC4 also stimulates the sequence-specific DNA binding of p53 with the C-terminal 30 amino acids deleted (p53Delta30), suggesting that PC4 mediates enhancement of p53 DNA binding by a unique mechanism. We also demonstrated that PC4 can stimulate p53- and p53Delta30-mediated transactivation from a p53-responsive promoter. Furthermore, PC4 enhances p53- and p53Delta30-dependent apoptosis by inducing bax (a p53-targeted proapoptotic gene) gene expression. These results establish the first physiological role of PC4 as a transcriptional coactivator.

Apoptosis↗

PubMed2003

The acidic C-terminal domain and A-box of HMGB-1 regulates p53-mediated transcription.

p53 function is modulated by several covalent and non-covalent modifiers. The architectural DNA- binding protein, High Mobility Group protein B-1 is a unique activator of p53. HMGB-1 protein is structured into two HMG-box domains, namely A-box and B-box, connected to a long highly acidic C-terminal domain. Here we report that both the C-terminal domain and A-box of HMGB-1 are critical for stimulation of p53-mediated DNA binding to its cognate site. Though deletion of these domains showed minimal effect in activation of p53-mediated transcription from the DNA template as compared to full-length HMGB-1, truncation of both the domains indeed showed significant reduction of transcriptional activation from the chromatin template as observed in DNA binding. Using transient transfection assays we showed that the C-terminal acidic domain and A-box of HMGB-1 are critical for the enhancement of the p53-mediated transactivation in vivo. Furthermore, the C-terminal domain and A-box deleted HMGB-1 could not activate p53-dependent apoptosis above the basal level. In conclusion, these results elucidate the role of acidic C-terminal domain and A-box of HMGB-1 in p53-mediated transcriptional activation and its further downstream effect.

Apoptosis↗