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Steven A Cohen

Publications and source records attributed to Steven A Cohen.

10 recordsLinked to original sources
PubMed2006

Integration of multidimensional chromatographic protein separations with a combined "top-down" and "bottom-up" proteomic strategy.

In this paper, we present a combined top-down/bottom-up proteomic analysis workflow for the characterization of proteomic samples. This workflow combines protein fractionation (multidimensional chromatographic separation) with parallel online ESI-TOF-MS intact protein analysis, and fraction collection. Collected fractions were digested and protein identifications were produced using MALDI Q-TOF-MS analysis. These identifications were then linked with corresponding ESI-TOF-MS intact protein mass data to permit full protein characterization. This methodology was applied to an E. coli cytosolic protein fraction, and enabled the identification and characterization of proteins exhibiting co-translational processing, post-translational modification, and proteolytic processing events. The approach also provided the ability to distinguish between closely related protein isoforms. The summary of results from this study indicated that roughly one-third of all detected components generated corresponding data from both top-down and bottom-up analyses, and that significant and novel information can be derived from this application of the hybrid analytical methodology.

Chemical Fractionation↗
PubMed2005

Polyethylene chain growth on zinc catalyzed by olefin polymerization catalysts: a comparative investigation of highly active catalyst systems across the transition series.

Highly active transition metal ethylene polymerization catalysts across the transition series have been investigated for their ability to catalyze chain growth on zinc. In reactions of various catalysts with ZnEt(2), product distributions range from Schulz-Flory to Poisson, with several catalysts showing intermediate behavior. A statistical modeling program is introduced to correlate product distributions with the relative rates of propagation, chain transfer to zinc, and beta-H transfer. Six regimes have been identified, ranging from Schulz-Flory to pure Poisson where chain transfer to metal is the only termination process, through to combined alkane/alkene distributions where beta-H transfer is competitive with chain transfer to metal. It is concluded that, while catalyzed chain growth (CCG) is favored by a reasonable match between the bond dissociation energies of both the main group and transition metal alkyl species, the M-C bond energies of the bridging alkyl species, and hence the stabilities of any hetero-bimetallic intermediates or transition states, are key. The latter are strongly influenced by the steric environment around the participating metal centers, more bulky ligands leading to a weakening of the bonds to the bridging alkyl groups; CCG is thus usually more favored for sterically hindered catalysts.

Journal Article↗
PubMed2005

Evaluation of multidimensional (ion-exchange/reversed-phase) protein separations using linear and step gradients in the first dimension.

The performance characteristics of multidimensional liquid chromatographic protein separations were evaluated using on-line electrospray mass detection, and a novel workflow for automated LC/MS data processing. Two-dimensional ion exchange/reversed-phase LC separations of Escherichia coli cytosol were conducted using either a continuous linear or discontinuous step gradient in the first dimension. Chromatographic profiles of the top 100 most abundant components were characterized to assess overall separation reproducibility within each mode, and to characterize differences in component distribution between the two modes of operation. Analysis of the resulting data indicates that multidimensional separations of complex protein mixtures can be done reproducibly. Furthermore, under the conditions employed within this study, a linear first dimension gradient was more effective at fractionating the protein mixture, distributing fewer major components to multiple second dimension cycles than an equivalent step gradient. The application of on line mass spectrometry, and automated processing of the resulting data, proved valuable for producing component level analysis of multidimensional protein separations.

Chromatography, Ion Exchange↗
PubMed2004

Iron catalyzed polyethylene chain growth on zinc: a study of the factors delineating chain transfer versus catalyzed chain growth in zinc and related metal alkyl systems.

The bis(imino)pyridine iron complex, [[2,6-(MeC=N-2,6-iPr2C6H3)2C5H)N]FeCl2] (1), in combination with MAO and ZnEt2 (> 500 equiv.), is shown to catalyze polyethylene chain growth on zinc. The catalyzed chain growth process is characterized by an exceptionally fast and reversible exchange of the growing polymer chains between the iron and zinc centers. Upon hydrolysis of the resultant ZnR2 product, a Poisson distribution of linear alkanes is obtained; linear alpha-olefins with a Poisson distribution can be generated via a nickel-catalyzed displacement reaction. Other dialkylzinc reagents such as ZnMe2 and ZniPr2 also show catalyzed chain growth; in the case of ZnMe2 a slight broadening of the product distribution is observed. The products obtained from Zn(CH2Ph)2 show evidence for chain transfer but not catalyzed chain growth, whereas ZnPh2 shows no evidence for chain transfer. The Group 13 metal alkyl reagents AlR3 (R = Me, Et, octyl, IBu) and GaR3 (R = Et, nBu) act as highly efficient chain transfer agents, whereas GaMe3 exhibits behavior close to catalyzed chain growth. LinBu, MgnBu2 and BEt3 result in very low activity catalyst systems. SnMe4 and PbEt4 give active catalysts, but with very little chain transfer to Sn or Pb. The remarkably efficient iron catalyzed chain growth reaction for ZnEt2 compared to other metal alkyls can be rationalized on the basis of: (1) relatively low steric hindrance around the zinc center, (2) their monomeric nature in solution, (3) the relatively weak Zn-C bond, and (4) a reasonably close match in Zn-C and Fe-C bond strengths.

Journal Article↗
PubMed2004

Comparison of desorption/ionization on silicon (DIOS) time-of-flight and liquid chromatography/tandem mass spectrometry for assaying enzyme-inhibition reactions.

Desorption/ionization on silicon with time-of-flight mass spectrometry (DIOS-TOFMS) was employed for rapid quantification of small molecules and the measurement of critical constants used in enzyme kinetics studies. The approach was used to determine the Michaelis constant (Km) for acetylcholine esterase and the 50% inhibition constant (IC50) for tacrine. The Km was determined from a Lineweaver-Burk plot to be 98 microM. The IC50 was determined by assaying acetylcholine esterase activity with a range of tacrine concentrations, and measuring the amount of choline produced at a fixed time point by either DIOS-TOFMS or by liquid chromatography tandem mass spectrometry (LC/MS/MS). DIOS-TOFMS indicated an IC50 of 32.0 nM while LC/MS/MS gave a value of 31.8 nM. The excellent correlation with the reported IC50 values, ranging from 30.0 to 50.0 nM, and equivalence with the LC/MS/MS results, confirms that the DIOS-TOFMS method can be used for rapid and specific quantification of enzyme-inhibition assays.

Acetylcholine↗
PubMed2002

Multidimensional chromatography coupled to electrospray ionization time-of-flight mass spectrometry as an alternative to two-dimensional gels for the identification and analysis of complex mixtures of intact proteins.

The limitations of 2-D gels for global proteomics have encouraged the development of alternative approaches for identifying proteins in complicated mixtures, and determining their modification state. In this work, we describe the application of multidimensional liquid chromatography (SCX-RPLC) coupled with electrospray time-of-flight mass spectrometry and off-line fraction collection to analyze complex intact protein mixtures. Methods were developed using both standard proteins and an enriched yeast ribosomal fraction sample containing approximately 100 proteins, which permitted assessment of the effectiveness of the individual separation dimensions, as well as investigation of the interplay between separation capacity and electrospray MS performance.

Chromatography, Ion Exchange↗
PubMed2002

Continuous sample deposition from reversed-phase liquid chromatography to tracks on a matrix-assisted laser desorption/ionization precoated target for the analysis of protein digests.

Peptide mass fingerprinting by matrix-assisted laser desorption/ionization (MALDI)-mass spectrometry (MS) is one of the standard high-throughput methods for protein identification today. Traditionally this method has been based on spotting peptide mixtures onto MALDI targets. While this method works well for more abundant proteins, low-abundance proteins mixed with high-abundance proteins tend to go undetected due to ion suppression effects, instrumental dynamic range limitations and chemical noise interference. We present an alternative approach where liquid chromatography (LC) effluent is continuously collected as linear tracks on a MALDI target. In this manner the chromatographic separation is spatially preserved on the target, which enables generation of off-line LC-MS and LC-MS/MS data by MALDI. LC-MALDI sample collection provides improved sensitivity and dynamic range, spatial resolution of peptides along the sample track, and permits peptide mass mapping of low-abundance proteins in mixtures containing high-abundance proteins. In this work, standard and ribosomal protein digests are resolved and captured using LC-MALDI sample collection and analyzed by MALDI-TOF-MS.

Amino Acid Sequence↗