Scientific software development is not an oxymoron.
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Research↗
Biomedical subjects
Steven W Day
Publications and source records attributed to Steven W Day.
Multidimensional analysis of suction feeding performance in fishes: fluid speed, acceleration, strike accuracy and the ingested volume of water.
Suction feeding fish draw prey into the mouth using a flow field that they generate external to the head. In this paper we present a multidimensional perspective on suction feeding performance that we illustrate in a comparative analysis of suction feeding ability in two members of Centrarchidae, the largemouth bass (Micropterus salmoides) and bluegill sunfish (Lepomis macrochirus). We present the first direct measurements of maximum fluid speed capacity, and we use this to calculate local fluid acceleration and volumetric flow rate. We also calculated the ingested volume and a novel metric of strike accuracy. In addition, we quantified for each species the effects of gape magnitude, time to peak gape, and swimming speed on features of the ingested volume of water. Digital particle image velocimetry (DPIV) and high-speed video were used to measure the flow in front of the mouths of three fish from each species in conjunction with a vertical laser sheet positioned on the mid-sagittal plane of the fish. From this we quantified the maximum fluid speed (in the earthbound and fish's frame of reference), acceleration and ingested volume. Our method for determining strike accuracy involved quantifying the location of the prey relative to the center of the parcel of ingested water. Bluegill sunfish generated higher fluid speeds in the earthbound frame of reference, accelerated the fluid faster, and were more accurate than largemouth bass. However, largemouth bass ingested a larger volume of water and generated a higher volumetric flow rate than bluegill sunfish. In addition, because largemouth bass swam faster during prey capture, they generated higher fluid speeds in the fish's frame of reference. Thus, while bluegill can exert higher drag forces on stationary prey items, largemouth bass more quickly close the distance between themselves and prey. The ingested volume and volumetric flow rate significantly increased as gape increased for both species, while time to peak gape had little effect on the volume. However, peak gape distance did not affect the maximum fluid speed entering the mouth for either species. We suggest that species that generate high fluid speeds in the earthbound frame of reference will commonly exhibit small mouths and a high capacity to deliver force to buccal expansion, while species that ingest a large volume of water and generate high volumetric flow rates will have larger buccal cavities and cranial expansion linkage systems that favor displacement over force delivery.
Animals↗
The pressures of suction feeding: the relation between buccal pressure and induced fluid speed in centrarchid fishes.
Suction feeding fish rapidly expand their oral cavity, resulting in a flow of water directed towards the mouth that is accompanied by a drop in pressure inside the buccal cavity. Pressure inside the mouth and fluid speed external to the mouth are understood to be mechanically linked but the relationship between them has never been empirically determined in any suction feeder. We present the first simultaneous measurements of fluid speed and buccal pressure during suction feeding in fishes. Digital particle image velocimetry (DPIV) and high-speed video were used to measure the maximum fluid speed in front of the mouth of four largemouth bass and three bluegill sunfish by positioning a vertical laser sheet on the mid-sagittal plane of the fish. Peak magnitude of pressure inside the buccal cavity was quantified using a transducer positioned within a catheter that opened into the dorsal wall of the buccal cavity. In both species the time of peak pressure preceded the time of peak fluid speed by as much as 42 ms, indicating a role for unsteady flow effects in shaping this relation. We parameterized an existing model of suction feeding to determine whether the relationship between peak pressures and fluid speeds that we observed could be predicted using just a few kinematic variables. The model predicted much higher fluid speeds than we measured at all values of peak pressure and gave a scaling exponent between them (0.51) that was higher than observed (0.36 for largemouth bass, 0.38 for bluegill). The scaling between peak buccal pressure and peak fluid speed at the mouth aperture differed in the two species, supporting the recent conclusion that species morphology affects this relation such that a general pattern may not hold.
Animals↗
PIV measurements of flow in a centrifugal blood pump: steady flow.
Magnetically suspended left ventricular assist devices have only one moving part, the impeller. The impeller has absolutely no contact with any of the fixed parts, thus greatly reducing the regions of stagnant or high shear stress that surround a mechanical or fluid bearing. Measurements of the mean flow patterns as well as viscous and turbulent stresses were made in a shaft-driven prototype of a magnetically suspended centrifugal blood pump at several constant flow rates (3-9 L/min) using particle image velocimetry (PIV). The chosen range of flow rates is representative of the range over which the pump may operate while implanted. Measurements on a three-dimensional measurement grid within several regions of the pump, including the inlet, blade passage, exit volute, and diffuser are reported. The measurements are used to identify regions of potential blood damage due to high shear stress and/or stagnation of the blood, both of which have been associated with blood damage within artificial heart valves and diaphragm-type pumps. Levels of turbulence intensity and Reynolds stresses that are comparable to those in artificial heart valves are reported. At the design flow rate (6 L/min), the flow is generally well behaved (no recirculation or stagnant flow) and stress levels are below levels that would be expected to contribute to hemolysis or thrombosis. The flow at both high (9 L/min) and low (3 L/min) flow rates introduces anomalies into the flow, such as recirculation, stagnation, and high stress regions. Levels of viscous and Reynolds shear stresses everywhere within the pump are below reported threshold values for damage to red cells over the entire range of flow rates investigated; however, at both high and low flow rate conditions, the flow field may promote activation of the clotting cascade due to regions of elevated shear stress adjacent to separated or stagnant flow.
Algorithms↗
PIV measurements of flow in a centrifugal blood pump: time-varying flow.
Measurements of the time-varying flow in a centrifugal blood pump operating as a left ventricular assist device (LVAD) are presented. This includes changes in both the pump flow rate as a function of the left ventricle contraction and the interaction of the rotating impeller and fixed exit volute. When operating with a pulsing ventricle, the flow rate through the LVAD varies from 0-11 L/min during each cycle of the heartbeat. Phase-averaged measurements of mean velocity and some turbulence statistics within several regions of the pump, including the inlet, blade passage, exit volute, and diffuser, are reported at 20 phases of the cardiac cycle. The transient flow fields are compared to the constant flow rate condition that was reported previously in order to investigate the transient effects within the pump. It is shown that the quasi-steady assumption is a fair treatment of the time varying flow field in all regions of this representative pump, which greatly simplifies the comprehension and modeling of this flow field. The measurements are further interpreted to identify the effects that the transient nature of the flow field will have on blood damage. Although regions of recirculation and stagnant flow exist at some phases of the cardiac cycle, there is no location where flow is stagnant during the entire heartbeat.
Algorithms↗
Sucking while swimming: evaluating the effects of ram speed on suction generation in bluegill sunfish Lepomis macrochirus using digital particle image velocimetry.
It is well established that suction feeding fish use a variable amount of swimming (ram) during prey capture. However, the fluid mechanical effects of ram on suction feeding are not well established. In this study we quantified the effects of ram on the maximum fluid speed of the water entering the mouth during feeding as well as the spatial patterns of flow entering the mouth of suction-feeding bluegill sunfish Lepomis macrochirus. Using Digital Particle Image Velocimetry (DPIV) and high-speed video, we observed the flow in front of the mouth of three fish using a vertical laser sheet positioned on the mid-sagittal plane of the fish. From this we quantified the maximum fluid speed (measured at a distance in front of the mouth equal to one half of the maximum mouth diameter), the degree of focusing of water flow entering the mouth, and the shape of the ingested volume of water. Ram speed in 41 feeding sequences, measured at the time of maximum gape, ranged between 0 and 25 cm s(-1), and the ratio of ram speed to fluid speed ranged from 0.1% to 19.1%. In a regression ram speed did not significantly affect peak fluid speed, but with an increase in ram speed the degree of focusing of water entering the mouth increased significantly, and the shape of the ingested volume of water became more elongate and narrow. The implications of these findings are that (1) suction feeders that employ ram of between 0% and 20% of fluid speed sacrifice little in terms of the fluid speeds they generate and (2) ram speed enhances the total body closing speed of the predator.
Animals↗
Spatial and temporal patterns of water flow generated by suction-feeding bluegill sunfish Lepomis macrochirus resolved by Particle Image Velocimetry.
The suction-feeding fish generates a flow field external to its head in order to draw prey into the mouth. To date there are very few empirical measurements that characterize the fluid mechanics of suction feeding, particularly the temporal and spatial patterns of water velocity in front of the fish. To characterize the flow in front of suction-feeding bluegill sunfish Lepomis macrochirus, measurements with high spatial (<1 mm) and temporal (500 Hz) resolution were taken using Particle Image Velocimetry (PIV). In an analysis separate from the PIV, high-speed video sequences were used for a novel method of visually tracking every seed particle for the duration of each feeding in order to determine directly the total parcel of water that the fish ingests. PIV measurements and particle tracking show that water is drawn from all around the mouth. Fluid velocity decreases rapidly with distance from the mouth and is only significant (>5% of speed at the mouth) within roughly 1 mouth diameter of the fish. Suction feeders gain little in terms of extending this flow field by even substantial increases in the fluid speed at the mouth opening. Instead, the chief advantage of increased flow speed at the mouth may be the increased magnitude of generated forces within the space very close to the mouth. After scaling of the velocity field based on size of the mouth opening and the measured fluid speed at a fixed position, the measured velocity profiles for all feedings are very similar to one another, so that a functional relationship for the magnitude of fluid speed as a function of distance from the predator mouth is presented and shown to be accurate over the range of kinematic variables tested. This relationship describes the velocity field both along the centerline of the fish and along transects lying at an angle to the centerline within both the mid-sagittal and frontal planes. Comparison of the time-resolved fluid velocity measurements to gape kinematics demonstrate that peak fluid speed occurs simultaneously with 95% of peak gape, showing that the bluegill maximizes nearly simultaneously both the generated forces and size of the region over which these forces act. The magnitude of peak fluid speed during each strike decreases as a function of increasing time to peak gape (r2 = 0.87), demonstrating a strong relationship between the rate of buccal cavity expansion and maximum generated flow speed.
Animals↗
Studies of turbulence models in a computational fluid dynamics model of a blood pump.
Computational fluid dynamics (CFD) is used widely in design of rotary blood pumps. The choice of turbulence model is not obvious and plays an important role on the accuracy of CFD predictions. TASCflow (ANSYS Inc., Canonsburg, PA, U.S.A.) has been used to perform CFD simulations of blood flow in a centrifugal left ventricular assist device; a k-epsilon model with near-wall functions was used in the initial numerical calculation. To improve the simulation, local grids with special distribution to ensure the k-omega model were used. Iterations have been performed to optimize the grid distribution and turbulence modeling and to predict flow performance more accurately comparing to experimental data. A comparison of k-omega model and experimental measurements of the flow field obtained by particle image velocimetry shows better agreement than k-epsilon model does, especially in the near-wall regions.
Equipment Design↗
A prototype HeartQuest ventricular assist device for particle image velocimetry measurements.
The objective of this study is to fully characterize the flow within the HeartQuest ventricular assist device (VAD), a magnetically levitated centrifugal VAD, using particle image velocimetry (PIV) to identify regions of potential high shear or stagnation and validate and refine computational models of the flow. An acrylic model of the pump was designed and constructed to allow optical access into all interior regions of the pump. The geometry of the exterior housing and the use of a novel working fluid make quantitative measurements of velocity within the exit volute, blade passage, cut-water, blade tip clearance, and pump inlet possible. Highly accurate velocity measurements using particle PIV have been made in one region (the inlet elbow), and measurements in the other critical regions of the pump will be made. These measurements are used for investigation of regions with potential for hemolysis resulting from high shear stress or with potential for thrombosis caused by recirculation or stagnation. Quantitative velocity data are also needed for comparison with computational fluid dynamics (CFD) models of the VAD. In this study, experiments have again proven to be an essential complement to CFD for thorough investigations of the flow inside the pump.
Blood Flow Velocity↗
Computational fluid dynamics modeling of impeller designs for the HeartQuest left ventricular assist device.
To finalize the design of the next generation of the HeartQuest left ventricular assist device, a suitable impeller had to be designed and tested. The new prototype was based on calculations and test results of previous designs, but required several changes to decrease the size. For most pump designs, this is a simple matter of altering impeller geometry and rotational speed to achieve the desired pressure rise and flow rate. However, this particular pump was limited by housing geometry and the magnetic bearings that support the impeller. Without much freedom in the overall impeller size, the only parameters open to the designers were the blade profiles and the rotating speed. Rather than build several candidates and test them in a rig at enormous cost, computational models of several designs were tested and analyzed. This not only saved money, but also sped up the development time for the project. The computer models were developed in TASCflow, a computational fluid dynamics software package from AEA Technologies. This paper analyzes the data from several of the selected models, paying close attention to pumping performance and general trends from specific design changes.
Heart-Assist Devices↗
Design and transient computational fluid dynamics study of a continuous axial flow ventricular assist device.
A ventricular assist device (VAD), which is a miniaturized axial flow pump from the point of view of mechanism, has been designed and studied in this report. It consists of an inducer, an impeller, and a diffuser. The main design objective of this VAD is to produce an axial pump with a streamlined, idealized, and nonobstructing blood flow path. The magnetic bearings are adapted so that the impeller is completely magnetically levitated. The VAD operates under transient conditions because of the spinning movement of the impeller and the pulsatile inlet flow rate. The design method, procedure, and iterations are presented. The VAD's performance under transient conditions is investigated by means of computational fluid dynamics (CFD). Two reference frames, rotational and stationary, are implemented in the CFD simulations. The inlet and outlet surfaces of the impeller, which are connected to the inducer and diffuser respectively, are allowed to rotate and slide during the calculation to simulate the realistic spinning motion of the impeller. The flow head curves are determined, and the variation of pressure distribution during a cardiac cycle (including systole and diastole) is given. The axial oscillation of impeller is also estimated for the magnetic bearing design. The transient CFD simulation, which requires more computer resources and calculation efforts than the steady simulation, provides a range rather than only a point for the VAD's performance. Because of pulsatile flow phenomena and virtual spinning movement of the impeller, the transient simulation, which is realistically correlated with the in vivo implant scenarios of a VAD, is essential to ensure an effective and reliable VAD design.
Blood Flow Velocity↗