Biomedical subjects

T Koritsanszky

Publications and source records attributed to T Koritsanszky.

5 recordsLinked to original sources

PubMed2002

Intra- and intermolecular topological properties of amino acids: a comparative study of experimental and theoretical results.

The charge densities rho(r) of the six amino acids L-Asn.H(2)O, DL-Glu.H(2)O, DL-Lys.HCl, DL-Pro.H(2)O, DL-Ser, and DL-Val were determined from high-resolution X-ray diffraction experiments at 100 K using synchrotron radiation and area detection (CCD) techniques. Bond topological parameters derived from these densities and from those of six additional amino acids published earlier are compared to each other and to the results of ab initio calculations. Experimental and theoretical properties for each chemically equivalent bond are in a fair agreement, and their variances are of similar magnitude. A noticeable outlier is the positive curvature of the density at the bond critical point, for which no correlation between the experimental and theoretical values can be established. The location of nonbonded valence shell charge concentrations derived from the crystalline densities scatter in a wider range than those obtained for the isolated molecules.

Amino Acids↗

PubMed2000

The low-temperature study of D- and DL-camphoric anhydride.

The low-temperature crystal stuctures of D- and DL-camphoric anhydride, C(10)H(14)O(3), have been determined by X-ray diffraction methods. Although the two enantiomers crystallize in different space groups, the cell volumes and densities are essentially the same. The six-membered rings deviate significantly from planarity, both exhibiting half-boat conformations. The dihedral angle between the six- and five-membered rings is 80.3 (1) degrees in both cases. The main difference in the molecular stuctures can be described by two torsion angles associated with the H atoms of the methyl substituents. The packing of the racemic and chiral structures are essentially the same.

Journal Article↗

PubMed1999

On the errors in molecular dipole moments derived from accurate diffraction data.

The error in the molecular dipole moment as derived from accurate X-ray diffraction data is shown to be origin dependent in the general case. It is independent of the choice of origin if an electroneutrality constraint is introduced, even when additional constraints are applied to the monopole populations. If a constraint is not applied to individual moieties, as is appropriate for multicomponent crystals or crystals containing molecular ions, the geometric center of the entity considered is a suitable choice of origin for the error treatment.

Journal Article↗

PubMed1998

Accurate experimental electronic properties of dl-proline monohydrate obtained within 1 Day

A 1-day x-ray diffraction experiment on dl-proline monohydrate was performed at 100 kelvin with synchrotron radiation and a charge-coupled device area detection technique. The accuracy of the charge density distribution and of the related electronic properties extracted from these data is comparable or even superior to the accuracy obtained from a 6-week experiment on dl-aspartic acid with conventional x-ray diffraction methods. A data acquisition time of 1 day is comparable to the time needed for an ab initio calculation on the isolated molecules. This technique renders larger molecular systems of biological importance accessible to charge density experiments.

Journal Article↗

PubMed1988

The Gram-Charlier and multipole expansions in accurate X-ray diffraction studies: can they be distinguished?

The Gram-Charlier temperature factor formalism has been applied to a set of accurate low-temperature data on bis(pyridine)(meso-tetraphenylporphinato)iron(II), and to a theoretical set of static structure factors on the hexaaquairon(II) ion. The refinements are compared with the multipole treatment for atomic asphericity due to chemical bonding. In a treatment of the experimental data in which only the iron atom asphericity is considered, the 'thermal motion' formalism is as efficient as the multipole formalism in accounting for the observations. It is slightly less efficient when applied to the static theoretical data, though model maps based on the two treatments are remarkably similar. A high-order Gram-Charlier refinement of the porphyrin data, followed by a multipole refinement of all data with the Gram-Charlier parameters initially fixed, and later varied, shows that simultaneous refinement of anharmonic and aspherical effects is possible, though the resulting separation may not be accurate. A combined Gram-Charlier multipole refinement on the static data, however, leads to non-significant thermal parameters. It is concluded that the statistical Gram-Charlier formalism is remarkably successful in representing bonding effects in the valence charge density if these are not specifically accounted for in the scattering formalism. Statistical anharmonic thermal motion formalisms should only be used for X-ray data analysis in combination with a formalism accounting for the effect of bonding on the atomic charge density.

Chemical Phenomena↗