Biomedical subjects

Tae Kyu Kim

Publications and source records attributed to Tae Kyu Kim.

5 recordsLinked to original sources

PubMed2006

Intracluster ion-molecule reactions of Ti+ with C2H5OH and CF3CH2OH clusters: influence of fluorine substituents on chemical reactivity.

A laser ablation-molecular beam/reflectron time-of-flight mass spectrometric technique was used to investigate the ion-molecule reactions that proceed within Ti+(ROH)n (R = C2H5, CF3CH2) heterocluster ions. The mass spectra exhibit a major sequence of cluster ions with the formula Ti+(OR)m(ROH)n (m = 1, 2), which is attributed to sequential insertions of Ti+ into the O-H bond of C2H5OH or CF3CH2OH molecules within the heteroclusters, followed by H eliminations. The TiO+ and TiOH+ ions produced from the reactions of Ti+ with C2H5OH are interpreted as arising from insertion of Ti+ into the C-O bond, followed by C2H5 and C2H6 eliminations, respectively. When Ti+ reacted with CF3CH2OH, by contrast, considerable contributions from TiFOH+, TiF2+, and TiF2OH+ ions were observed in the mass spectrum of the reaction products, indicating that F and OH abstractions are the dominant product channels. Ab initio calculations of the complex of Ti+ with 2,2,2-trifluoroethanol show that the minimum energy structure is that in which Ti+ is attached to the O atom and one of the three F atoms of 2,2,2-trifluoroethanol, forming a five-membered ring. Isotope-labeling experiments additionally show that the chemical reactivity of heterocluster ions is greatly influenced by the presence of fluorine substituents and cluster size. The reaction energetics and formation mechanisms of the observed heterocluster ions are discussed.

Ethanol↗

PubMed2006

Analyzing solution-phase time-resolved x-ray diffraction data by isolated-solute models.

Extracting transient structural information of a solute from time-resolved x-ray diffraction (TRXD) data is not trivial because the signal from a solution contains not only the solute-only term as in the gas phase, but also solvent-related terms. To obtain structural insights, the diffraction signal in q space is often Fourier sine transformed (FT) into r space, and molecular dynamics (MD) simulation-aided signal decomposition into the solute, cage, and solvent terms has so far been indispensable for a clear-cut assignment of structural features. Here we present a convenient method of comparative structural analysis without involving MD simulations by incorporating only isolated-species models for the solute. FT is applied to both the experimental data and candidate isolated-solute models, and comparison of the correlation factors between the experimental FT and the model FTs can distinguish the best candidate among isolated-solute models for the reaction intermediates. The low q region whose influence by solvent-related terms is relatively high can be further excluded, and this mode of truncated Fourier transform (TFT) improves the correlation factors and facilitates the comparison. TFT analysis has been applied to TRXD data on the photodissociation of C(2)H(4)I(2) in two different solvents (methanol and cyclohexane), HgI(2) in methanol, and I(3) (-) in methanol excited at 267 nm. The results are consistent with previous conclusions for C(2)H(4)I(2) in methanol and HgI(2) in methanol, and the new TRXD data reveal that the C(2)H(4)I transient radical has a bridged structure in cyclohexane and I(3) (-) in methanol decomposes into I+I(2) (-) upon irradiation at 267 nm. This TFT method should greatly simplify the analysis because it bypasses MD simulations.

Journal Article↗

PubMed2006

Spatiotemporal reaction kinetics of an ultrafast photoreaction pathway visualized by time-resolved liquid x-ray diffraction.

We have studied the reaction dynamics for HgI(2) in methanol by using time-resolved x-ray diffraction (TRXD). Although numerous time-resolved spectroscopic studies have provided ample information about the early dynamics of HgI(2), a comprehensive reaction mechanism in the solution phase spanning from picoseconds up to microseconds has been lacking. Here we show that TRXD can provide this information directly and quantitatively. Picosecond optical pulses triggered the dissociation of HgI(2), and 100-ps-long x-ray pulses from a synchrotron probed the evolving structures over a wide temporal range. To theoretically explain the diffracted intensities, the structural signal from the solute, the local structure around the solute, and the hydrodynamics of bulk solvents were considered in the analysis. The results in this work demonstrate that the determination of transient states in solution is strongly correlated with solvent energetics, and TRXD can be used as an ultrafast calorimeter. It also is shown that a manifold of structural channels can be resolved at the same time if the measurements are accurate enough and that global analysis is applied. The rate coefficients for the reactions were obtained by fitting our model against the experimental data in one global fit including all q-values and time delays. The comparison between all putative reaction channels confirms that two-body dissociation is the dominant dissociation pathway. After this primary bond breakage, two parallel channels proceed. Transient HgI associates nongeminately with an iodine atom to form HgI(2), and I(2) is formed by nongeminate association of two iodine atoms.

Journal Article↗

PubMed2005

Photodissociation reaction of 1,2-diiodoethane in solution: a theoretical and X-ray diffraction study.

Various molecular species are known to form during the photoreaction of C2H4I2 in the gas phase and in solution. We have studied all species involved in this reaction by ab initio and density functional theory (DFT) calculations: Geometries, energies, and vibrational frequencies of C2H4I2, bridged C2H4I*, anti C2H4I*, C4H4, I2, I3-, and the isomer C2H4I-I were calculated. The absorption peaks and oscillator strengths of selected species along the potential energy surface (PES) were calculated using time-dependent DFT and were compared with available experimental results. The calculated PES satisfactorily describes the observed reactions of the photoexcited C2H4I2 molecule. In the gas phase, there is only one reaction pathway: the first C-I bond ruptures followed by a secondary C-I breakage in the haloethyl radical C2H4I*. In solution, by contrast, another reaction channel, which is energetically more favored over the secondary dissociation, is switched on due to a solvation effect: the bridged C2H4I* can bind to the free iodine atom to form a C2H4I-I isomer without any energy barrier. The isomer can then break into C2H4 and I2. The rotational barriers in the gas phase and in solution were also calculated and compared. To provide experimental data on the structure of C2H4I2 in solution, the ground state structure of C2H4I2 in methanol was determined from static X-ray diffraction data using 88 keV (lambda = 0.14 A) X-rays. The structural parameters are compared with those from the theoretical results.

Computer Simulation↗

PubMed2005

The dynamics of Br(2Pj) formation in the photodissociation of vinyl and perfluorovinyl bromides.

The photodissociation dynamics of vinyl bromide and perfluorovinyl bromide have been investigated at 234 nm using a photofragment ion imaging technique coupled with a state-selective [2+1] resonance-enhanced multiphoton ionization scheme. The nascent Br atoms stem from the primary C-Br bond dissociation leading to the formation of C2H3(X) and Br(2Pj;j=1/2,3/2). The obtained translational energy distributions have been well fitted by a single Boltzmann and three Gaussian functions. Boltzmann component has not been observed in the perfluorovinyl bromide. The repulsive 3A'(n,sigma *) state has been considered as the origin of the highest Gaussian components. Middle translational energy components with Gaussian shapes are produced from the 1A"(pi,sigma*) and/or 3A"(pi,sigma*) which are very close in energy. Low-energy Gaussian components are produced via predissociation from the 3A'(pi,pi*) state. The assignments have also been supported by the recoil anisotropy corresponding to the individual components. It is suggested that intersystem crossing from the triplet states to the ground state has been attributed to the Boltzmann component and the fluorination reduces the probability of this electronic relaxation process.

Journal Article↗