Biomedical subjects

Taehyung Kim

Publications and source records attributed to Taehyung Kim.

3 recordsLinked to original sources

PubMed2006

Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications.

With the advent of automated and high-throughput techniques, the number of patent applications containing biological sequences has been increasing rapidly. However, they have attracted relatively little attention compared to other sequence resources. We have built a database server called Patome, which contains biological sequence data disclosed in patents and published applications, as well as their analysis information. The analysis is divided into two steps. The first is an annotation step in which the disclosed sequences were annotated with RefSeq database. The second is an association step where the sequences were linked to Entrez Gene, OMIM and GO databases, and their results were saved as a gene-patent table. From the analysis, we found that 55% of human genes were associated with patenting. The gene-patent table can be used to identify whether a particular gene or disease is related to patenting. Patome is available at http://www.patome.org/; the information is updated bimonthly.

Amino Acid Sequence↗

PubMed2006

Self-assembled structures with liquid-crystalline order in aqueous solution by patterning poly(phenylene ethynylene)s.

Facially amphiphilic (FA) phenylene ethynylene (PE) polymers that self-assemble in aqueous solution were studied by small-angle X-ray diffraction (SAXD) and found to self-assemble into bilayers with a fully extended backbone. The resulting bilayers have long-range liquid-crystalline order. This self-assembly is programmed into the molecule by placing polar and nonpolar groups at precise locations so that they segregate onto opposite sides of the molecular structure. The absence of FA patterning generated an amorphous sample confirming the importance of this programmed amphiphilicity in the self-assembly process. Facially amphiphilic patterning represents a new design criterion for supramolecular chemistry, illustrated here in the observation of molecular ordering into bilayers reminiscent of self-assembled structures commonly found in biology, including amphiphilic beta-sheet polypeptides and phospholipid bilayers.

Liquid Crystals↗

PubMed2004

Curving and frustrating flatland.

Two polymer chains that occupy equal volumes when covalently linked together at one end self-assemble into an alternating lamellar morphology that has a characteristic period dictated by the molecular weight. When such copolymers are confined within alumina membranes that have cylindrical pores with diameters comparable to the repeat period, the interaction of the blocks with the confining walls and the imposed curvature induces a morphological transformation to relieve the constraints. Here, we show a lamella-to-toroid transition, captured through the dissolution of the surrounding membrane.

Journal Article↗