Open science--combining open data and open source software: medical image analysis with the Insight Toolkit.
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Databases, Factual↗
Biomedical subjects
Terry S Yoo
Publications and source records attributed to Terry S Yoo.
The Visible Human data sets (VHD) and Insight Toolkit (ITk): experiments in open source software.
From its inception in 1989, the Visible Human Project was designed as an experiment in open source software. In 1994 and 1995 the male and female Visible Human data sets were released by the National Library of Medicine (NLM) as open source data sets. In 2002 the NLM released the first version of the Insight Toolkit (ITk) as open source software.
Female↗
Engineering and algorithm design for an image processing Api: a technical report on ITK--the Insight Toolkit.
We present the detailed planning and execution of the Insight Toolkit (ITK), an application programmers interface (API) for the segmentation and registration of medical image data. This public resource has been developed through the NLM Visible Human Project, and is in beta test as an open-source software offering under cost-free licensing. The toolkit concentrates on 3D medical data segmentation and registration algorithms, multimodal and multiresolution capabilities, and portable platform independent support for Windows, Linux/Unix systems. This toolkit was built using current practices in software engineering. Specifically, we embraced the concept of generic programming during the development of these tools, working extensively with C++ templates and the freedom and flexibility they allow. Software development tools for distributed consortium-based code development have been created and are also publicly available. We discuss our assumptions, design decisions, and some lessons learned.
Algorithms↗
NIH-NSF Visualization Research Challenges report summary.
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Biotechnology↗