Biomedical subjects

Theodore Goodson

Publications and source records attributed to Theodore Goodson.

17 recordsLinked to original sources

PubMed2007

Early aggregation in prion peptide nanostructures investigated by nonlinear and ultrafast time-resolved fluorescence spectroscopy.

We report the characterization of early aggregates in the self-assembly of prion peptides using nonlinear and ultrafast time-resolved fluorescence spectroscopy. The dye-labeled peptide and dye/peptide guest-host systems were used to demonstrate the feasibility of the new approach. By measuring the two-photon absorption cross-section, small aggregates of the dye labeled peptide were characterized. Ultrafast time-resolved fluorescence anisotropy spectroscopy reveals the packing state (microenvironment) of the probes to be tightly associated with aggregates and associated with aggregation progression of the peptides. Fluorescence intensity decay shows a correlation with growth of aggregates having a high level of structured beta-sheet content. A new binding ligand Cascade Yellow shows promise for beta-sheet recognition of prion peptide nanostructures. These findings may have implications for in vivo studies of neurotoxic aggregates targeting with fluorescence markers. Also, these results may provide insight into molecular design of peptide-based nanomaterials.

Coloring Agents↗

PubMed2006

Entangled photon absorption in an organic porphyrin dendrimer.

Two-photon absorption spectroscopy is an intensity dependent nonlinear effect related to the excitation of virtual intermediate states. The classical two-photon absorption has an extremely low efficiency which is quantified by its cross-section (delta approximately 10(-48) cm4 s at 800 nm). To overcome this limitation, we demonstrate a novel effect of the two-photon absorption method utilizing the high degree of quantum optical correlation between photon pairs created by the process of spontaneous parametric downconversion. A large entangled two-photon absorption cross-section (delta(e) approximately 10(-17) cm2 at 800 nm) was measured in an organic porphyrin dendrimer. We also discuss the nonmonotonic behavior of variation of the entangled two-photon absorption cross-section by controlling the entanglement time. This novel effect may open new avenues for ultrasensitive detection in chemical and biological systems. TPA spectroscopy has been considered as a powerful tool in physics, chemistry, and biology. The inherent nonlinear process of the classical TPA is distinguishable from the single photon absorption (SPA) linear process. Although the benefits of greater penetration depth and better control and reduction of scattering, the TPA spectroscopy has been restricted by the necessity of a high power optical source due to the low efficiency of the TPA effect. The use of entangled photons from a correlated source for the purpose of the two-photon effect is promising in this regard as one may obtain two-photon effects with very small numbers of photons.

Journal Article↗

PubMed2006

High frequency dielectric response in a branched phthalocyanine.

We describe the dielectric effects in a novel branched phthalocyanine system. The synthesis and characterization of the hyperbranched structure are provided. The dielectric constant was approximately 45 over many decades of frequency, and the dispersion was small up to 1 MHz. The losses experienced in this novel material were very small (close to 0.001) at high frequency. The mechanism of this novel effect in the branched structure involves a delocalized polaronic state which takes advantage of the strong intramolecular interactions in the system.

Journal Article↗

PubMed2006

Building symmetric two-dimensional two-photon materials.

Two-dimensional multi-annulenic carbon networks are important molecules with possible applications in optoelectronic devices and nonlinear optics. Investigations of two-photon absorption (TPA) cross sections have been carried out in a series of annulenes with a basic building block approach and variable symmetries. Enhancement of the TPA cross section has been observed with an increase in number of building blocks and order of symmetry. Evaluations of the ground-state transition dipole moment and chromophore density are not sufficient to explain the observed enhancement. Estimates of excited-state transition dipole moments made by femtosecond transient absorption measurements are able to successfully predict the observed trend in TPA cross section. It has been observed that the symmetry of the molecule plays a vital role in enhancing the TPA cross section by virtue of increasing the excited-state transition dipole moment.

Journal Article↗

PubMed2006

Ultrafast excited state relaxation dynamics of branched donor-pi-acceptor chromophore: evidence of a charge-delocalized state.

Excited-state dynamics and complete transient absorption features of the trimer tris-4,4',4' '-(4-nitrophenyleethynyl)triphenylamine and the monomer 4-N,N-(dimethylamino)-4'-nitrotolane have been obtained from femtosecond pump-probe spectroscopy. The measurements are carried out to understand the mechanism behind enhanced two-photon absorption cross-sections of branched systems over their linear counterparts. Absorption and emission transition dipole moments of monomer and trimer in toluene have suggested that the emitting state of trimer is different from the monomer and probably is arising from the charge-delocalized C(3) symmetry state. Ultrafast transient absorption measurements on these molecules have spectroscopically validated the presence of an initial electron delocalized state with the C(3) symmetry state in the trimer molecule. The results have shown that there is a slower rate of internal conversion from the C(3) symmetry state to intramolecular charge transfer of trimer suggesting a barrier between them. Also, presence of a charge-stabilized state and involvement of a nonemissive state in the excited-state deactivation has been observed for both monomer and trimer.

Journal Article↗

PubMed2006

Investigation of two-photon absorption properties in branched alkene and alkyne chromophores.

Novel alkene and alkyne branched structures have been synthesized, and their two-photon absorption (2PA) properties are reported. This series of alkene and alkyne trimer systems tests the mechanistic approach for enhancing the 2PA process which is usually dictated by the pi-bridging, delocalization length, and corresponding charge transfer on the 2PA cross sections. The results suggest that alkene branched systems have higher 2PA cross sections. While steady-state absorption and emission measurements were not successful in predicting the observed trend of 2PA cross sections, time-resolved measurements have explained the trends observed. It was found that, upon photoexcitation, there is an ultrafast charge localization to an intramolecular charge-transfer (ICT) state, followed by the presence of a solvent and conformationally relaxed ICT state in these branched systems.

Journal Article↗

PubMed2006

Ultrafast energy migration in chromophore shell-metal nanoparticle assemblies.

A multifunctional ligand-coated nanoparticle system containing approximately 2000 highly two-photon absorptive chromophores has been investigated by means of steady-state and femtosecond time-resolved spectroscopy. This system with a high local concentration of chromophores showed remarkably low self-quenching and a high fluorescence quantum yield, which is important for a variety of two-photon sensing and imaging applications. We have observed evidence for ultrafast energy migration in these chromophore shell-metal nanoparticle systems. Time-resolved experiments also showed non-zero residual anisotropy after the initial fast decay, which can be interpreted as due to the formation of the specific domains on the metal surfaces. This investigation opens new avenues toward the development of multi-chromophoric efficient TPA fluorescence sensing/imaging systems with large numbers of chromophores per one metal particle nanoparticle.

Journal Article↗

PubMed2006

Optical excitations in carbon architectures based on dodecadehydrotribenzo[18]annulene.

The origin of excitations in multi-chromophore carbon network substructures based on dodecadehydrotribenzo[18]annulene has been investigated by steady-state and photon echo spectroscopy, configuration interaction (CIS and CIS(D)), and time-dependent density functional theory (TD-DFT). 1,4-diphenylbutadiyne, the simplest structural subunit within the annulene, was used in modeling the spectroscopic studies to explain the origin of excitations in the macrocycles. The optical excitations in longer linear systems were found to be similar to its diphenylacetylene analogue. However, the results from dodecadehydrotribenzo[18]annulene and other multichromophore networks systems illustrate the possibility of strong intramolecular interactions and the formation of delocalized excited states. Calculations were carried out to explain the basic similarities and differences in excitations of the model compounds such as diphenylbutadiyne and the macrocycles. The fundamental excitation in these systems can be primarily described as a pi --> pi* transition. Two low-energy resonances were observed from experiment for the annulene systems, and possible explanations for these low-energy resonances in the macrocycles are explored. The significant difference found in the calculated oscillator strength of the two low-energy bands for the macrocycles as well as the dynamics of solvent interactions was further investigated by three-pulse photon echo measurements. A simple exciton model was developed to discuss the excitations in the larger macrocycles. The results from this model were found to be in good agreement with the TD-DFT calculations.

Journal Article↗

PubMed2005

Ultrafast dynamics in multibranched structures with enhanced two-photon absorption.

The understanding of the mechanism of the enhanced two-photon absorption (TPA) in multibranched chromophore systems is of importance to the design of materials with the large TPA cross-sections and for future applications. In this communication, the mechanism of enhanced TPA properties is investigated. For a dendritic model system, the excited-state dynamics for both population (T1-process) and phase relaxation (T2-process) processes involved are investigated by a combination of time-resolved spectroscopic techniques. The results of time-resolved fluorescence anisotropy are compared with previous results obtained from other branched chromophore systems. It is found that the PRL-701 trimer system, which possesses the large enhancement of two-photon absorption cross-section, gives a faster anisotropy decay (fluorescence upconversion and transient absorption), a longer population relaxation time (fluorescence lifetime), and a weaker coupling to the solvent (a larger photon echo peak shift initial value). New strategies for rational design of large TPA materials can be achieved based on a better understanding of the mechanism of the enhancement.

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PubMed2005

Up-converted emission in a series of phenylazomethine dendrimers with a porphyrin core.

The nonlinear optical and time-resolved properties of a series of phenylazomethine-porphyrin dendrimers are reported. The linear optical properties were also investigated, and the efficiency of the energy transfer process was obtained. Measurements were also carried out with the basic building-block molecules. The process of frequency up-converted emission was observed in these porphyrin dendrimers. The mechanism for this effect is investigated and related to the process of "hot-band" absorption in the phenylazomethine-porphyrin system. Time-resolved measurements also suggested efficient intramolecular vibrational energy redistribution in these systems. These properties suggest that the porphyrin dendrimers may also have applications in light harvesting of low-frequency photons, as well as in sensors.

Journal Article↗

PubMed2005

Complete inhibition of anisomycin and UV radiation but not cytokine induced JNK and p38 activation by an aryl-substituted dihydropyrrolopyrazole quinoline and mixed lineage kinase 7 small interfering RNA.

Mixed lineage kinase 7 (MLK7) is a mitogen-activated protein kinase kinase kinase (MAPKKK) that activates the pro-apoptotic signaling pathways p38 and JNK. A library of potential kinase inhibitors was screened, and a series of dihydropyrrolopyrazole quinolines was identified as highly potent inhibitors of MLK7 in vitro catalytic activity. Of this series, an aryl-substituted dihydropyrrolopyrazole quinoline (DHP-2) demonstrated an IC50 of 70 nM for inhibition of pJNK formation in COS-7 cell MLK7/JNK co-transfection assays. In stimulated cells, DHP-2 at 200 nM or MLK7 small interfering RNA completely blocked anisomycin and UV induced but had no effect on interleukin-1beta or tumor necrosis factor-alpha-induced p38 and JNK activation. Additionally, the compound blocked anisomycin and UV-induced apoptosis in COS-7 cells. Heart tissue homogenates from MLK7 transgenic mice treated with DHP-2 at 30 mg/kg had reduced JNK and p38 activation with no apparent effect on ERK activation, demonstrating that this compound can be used to block MLK7-driven MAPK pathway activation in vivo. Taken together, these data demonstrate that MLK7 is the MAPKKK required for modulation of the stress-activated MAPKs downstream of anisomycin and UV stimulation and that DHP-2 can be used to block MLK7 pathway activation in cells as well as in vivo.

Animals↗

PubMed2005

Enhanced third-order nonlinear optical properties in dendrimer-metal nanocomposites.

Nonlinear optical (NLO) and time-resolved fluorescence spectroscopic measurements of dendrimer-metal nanocomposites (DNCs) are reported. Third-order NLO effects were investigated by degenerate four-wave mixing (DFWM) measurements for DNCs and DNCs incorporated into thin polymeric films. The results show an enhancement of the third-order nonlinear susceptibility for the chromophore-functionalized dendrimer-metal nanocomposites. Investigations of the mechanism of the enhanced NLO effect suggested a strong contribution because of the metal's local field. These results show the potential usefulness of dendrimer-metal nanocomposites for nonlinear optical effects and biophotonic applications.

Dose-Response Relationship, Radiation↗

PubMed2004

Synthesis and activity of new aryl- and heteroaryl-substituted 5,6-dihydro-4H-pyrrolo[1,2-b]pyrazole inhibitors of the transforming growth factor-beta type I receptor kinase domain.

We have expanded our previously reported series of pyrazole-based inhibitors of the TGF-beta type I receptor kinase domain (TbetaR-I) to now include new 5,6-dihydro-4H-pyrrolo[1,2-b]pyrazole analogues. Limited examination of the SAR of this new series in both enzyme and cell based in vitro assays has revealed selectivity differences with respect to p38 MAP kinase (p38 MAPK) depending on the nature of the 'warhead' group on the dihydropyrrolopyrazole ring. As with our original pyrazole series, phenyl substituents tended to show greater selectivity against p38 MAPK than those comprised of the quinoline-4-yl moiety. We have also achieved co-crystallization and X-ray analysis of compounds 3 and 15, two potent examples of this new series, with the TbetaR-I receptor kinase domain.

Activin Receptors, Type I↗

PubMed2003

Ultrafast fluorescence investigation of excitation energy transfer in different dendritic core branched structures.

The mechanism of energy transport in branching structures is suggestively related to the geometry of the multichromophore architecture. In organic conjugated dendrimers, both incoherent (hopping) and coherent energy transfer processes have been observed from different dendritic architectures with different building blocks. In this communication, we report the investigation of three fundamental dendritic architectures (G0) with the same attached chromophores, but with different core atoms, C, N, and P. The synthesis of a phosphorus-containing G0 system with distyrylbenzene chromophores is provided. These three systems provide a comparison by which the relative interaction of branching chromophores can be compared on the basis of their different branching centers. Ultrafast fluorescence anisotropy measurements provide a dual measure of the geometry of the chromophores around the different central units as well as the strength of the interactions among chromophores. The nitrogen-cored system appeared to have both the strongest coupling of chromophore excitation as well as the most planar geometry of the three. Interestingly, the phosphorus system appeared to have the least planar geometry, and its interaction strength was found to be stronger than that observed for the carbon system. These results provide a comparison of the energy migration dynamics of the most common and new dendritic architectures with applications for light emission and light harvesting.

Journal Article↗

PubMed2003

Excitation energy transfer in branched dendritic macromolecules at low (4 k) temperatures.

To understand the mode of energy transport in branched dendritic macromolecules, the optical excitation of a dendritic core (A-DSB) at low temperature (4.2 K) was investigated. Fluorescence depolarization measurements were utilized to probe the energy-transfer processes in the branching center at several different temperatures. We found that the anisotropy decay shows an interesting trend at low temperature where depolarization times decreased and the residual anisotropy value also decreased with decreasing temperature. The very fast anisotropy decay suggests a coherent mechanism of energy transport in these systems at low temperature. The contribution of inhomogeneous broadening is suggested as an important factor in the temperature dependence of the anisotropy decay and residual value. The change in inhomogeneous linewidth is responsible for this type of anisotropy behavior.

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PubMed2002

Femtosecond excitation energy transport in triarylamine dendrimers.

The search for a model that can be used to describe the optical excitation migration in dendrimers has attracted great attention. In most cases in a dendrimer the conjugation is disrupted at the branching point; however, the excitation is delocalized. The strength of interactions among neighboring chromophores plays a key role in determining the energy migration mechanism. Conversely, having many identical chromophores held tightly together in an ordered macromolecular architecture will allow for many dipoles to be accessible for optical excitation. Therefore, the relative orientation of dipoles will be important in determining the mechanism of energy migration. Here we report the synthesis and photo-physical investigation of triarylamine-based dendrimers. Two important synthetic steps were utilized in the synthesis. First, we employed diphenylmethyl protective groups on the amines to assist in deprotective hydrogenolysis of the larger structures. Second, highly active catalysts for formation of both di- and triarylamines that are based on a 1:1 ratio of P(t-Bu)3 and Pd(dba)2 improved reaction yields of the C-N bond formation and decreased reaction times The energy migration processes in the dendrimers were investigated utilizing ultrafast time-resolved fluorescence anisotropy measurements. The fluorescence anisotropy of all three dendrimers decayed to a residual value within approximately 100 fs. This fluorescence anisotropy decay showed a general trend in decreasing with increasing dendrimer generation. The residual anisotropy value also showed a gradual decrease with an increase in the dendrimer generation. This fast energy depolarization is discussed through a coherent excitonic mechanism among dipoles oriented in different directions. We believe that the formation of coherent domains leads to fast energy migration extending over a large part of the dendrimer.

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PubMed2002

Coherent effects in energy transport in model dendritic structures investigated by ultrafast fluorescence anisotropy spectroscopy.

Measurements of ultrafast fluorescence anisotropy decay in model branched dendritic molecules of different symmetry are reported. These molecules contain the fundamental branching center units of larger dendrimer macromolecules with either three (C(3))- or four (T(d), tetrahedral)-fold symmetry. The anisotropy for a tetrahedral system is found to decay on a subpicosecond time scale (880 fs). This decay can be qualitatively explained by Förster-type incoherent energy migration between chromophores. Alternatively, for a nitrogen-centered trimer system, the fluorescence anisotropy decay time (35 fs) is found to be much shorter than that of the tetramers, and the decay cannot be attributed to an incoherent hopping mechanism. In this case, a coherent interchromophore energy transport mechanism should be considered. The mechanism of the ultrafast energy migration process in the branched systems is interpreted by use of a phenomenological quantum mechanical model, which examines the two extreme cases of incoherent and coherent interactions.

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