Biomedical subjects

Uri Sivan

Publications and source records attributed to Uri Sivan.

5 recordsLinked to original sources

PubMed2006

Molecular shift register and its utilization as an autonomous DNA synthesizer.

A novel algorithmic approach to the synthesis of fairly long DNA molecules with nonrecurring sequences is demonstrated. The scheme exploits chemical embodiment of shift registers (SR) to execute algorithms similar to those used to generate pseudorandom numbers on a computer. Single stranded DNA molecules guide the synthesis of double stranded DNA according to the SR truth table. The SR logic facilitates an exponentially smaller synthesis effort compared with all other strategies. A redundancy based scheme, similar to those used in communication, is utilized to suppress synthesis errors.

Algorithms↗

PubMed2006

Short range attraction between two similarly charged silica surfaces.

Using an atomic force microscope we measure the interaction between two identically charged silica surfaces in the presence of a saline solution. For pure NaCl the interaction is always repulsive. Upon addition of cobalt hexamine ions, Co(NH(3))(6)(+3), the repulsion is gradually suppressed and a pronounced attraction develops at distances much shorter than the screening length. Higher concentrations of cobalt hexamine turn the attraction back into repulsion. Measurements of surface charge renormalization by the trivalent cations provide their surface density and their association constant to the negatively charged silica surface. These estimates tend to exclude interaction between two condensed Wigner crystals as an explanation for the attraction.

Adsorption↗

PubMed2006

Antibody molecules discriminate between crystalline facets of a gallium arsenide semiconductor.

Seamless integration of biomolecules with manmade materials will most likely rely on molecular recognition and specific binding. In the following we show that combinatorial antibody libraries, based on the vast repertoire of the human immune system, can be harnessed to generate such binders. As a demonstration, we isolate antibody fragments that discriminate and bind selectively GaAs (111A) facets as opposed to GaAs (100). The isolated antibodies are utilized for exclusive localization of a fluorescent dye on (111A) surfaces in a structure comprising a mixture of (100) and (111A) surfaces. The potential importance of structure rigidity to facet recognition is suggested vis-a-vis published experiments with short and longer peptides.

Antibodies↗

PubMed2003

DNA-templated carbon nanotube field-effect transistor.

The combination of their electronic properties and dimensions makes carbon nanotubes ideal building blocks for molecular electronics. However, the advancement of carbon nanotube-based electronics requires assembly strategies that allow their precise localization and interconnection. Using a scheme based on recognition between molecular building blocks, we report the realization of a self-assembled carbon nanotube field-effect transistor operating at room temperature. A DNA scaffold molecule provides the address for precise localization of a semiconducting single-wall carbon nanotube as well as the template for the extended metallic wires contacting it.

Bacteriophage lambda↗

PubMed2002

Sequence-specific molecular lithography on single DNA molecules.

Recent advances in the realization of individual molecular-scale electronic devices emphasize the need for novel tools and concepts capable of assembling such devices into large-scale functional circuits. We demonstrated sequence-specific molecular lithography on substrate DNA molecules by harnessing homologous recombination by RecA protein. In a sequence-specific manner, we patterned the coating of DNA with metal, localized labeled molecular objects and grew metal islands on specific sites along the DNA substrate, and generated molecularly accurate stable DNA junctions for patterning the DNA substrate connectivity. In our molecular lithography, the information encoded in the DNA molecules replaces the masks used in conventional microelectronics, and the RecA protein serves as the resist. The molecular lithography works with high resolution over a broad range of length scales from nanometers to many micrometers.

Antibodies↗