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Biomedical subjects

V Subramanian

Publications and source records attributed to V Subramanian.

At least 37 records · Page 2Linked to original sources

Molecular structure, reactivity, and toxicity of the complete series of chlorinated benzenes.

The structure and chemical reactivity profiles of all 12 chlorobenzenes have been investigated using the density functional theory and ab initio molecular orbital calculations. Global and local reactivity descriptors such as electrophilicity index and local philicity, respectively, of the selected systems have been calculated in order to gain insights into the reactive nature and the reactive sites of these compounds. Also, the effects of chlorine substitution on the aromaticity of the compounds have been analyzed by calculating the nucleus-independent chemical shift. Interaction through charge transfer between chlorobenzenes and nucleic acid bases/selected base pairs are determined using Parr's formula. The results revealed that the chlorobenzenes act as electron acceptors in their interaction with biomolecules. Structure-toxicity analysis of this entire set of chlorobenzenes demonstrates the importance of the electrophilicity index in the prediction of reactivity/toxicity.

Journal Article↗

Hydrothermal synthesis and pseudocapacitance properties of MnO2 nanostructures.

The effect of varying the hydrothermal time to synthesize manganese oxide (MnO(2)) nanostructures was investigated along with their influence on structural, morphological, compositional, and electrochemical properties in supercapacitor electrode materials. XRD and TEM studies showed that the MnO(2) prepared in shorter hydrothermal dwell time was a mixture of amorphous and nanocrystalline particles, and there was an evolution of crystallinity of the nanostructures as the dwell time increased from 1 to 18 h. Interestingly, SEM, TEM, and HRTEM revealed a variety of structures ranging from nanostructured surface with a distinct platelike morphology to nanorods depending upon the hydrothermal reaction time employed during the preparation of the manganese oxide: increasing the amount of individual nanorods in the materials prepared with longer hydrothermal reaction time. The surface area of the synthesized nanomaterials varied from 100 to 150 m(2)/g. Electrochemical properties were evaluated using cyclic voltammetry (CV) and galvanostatic charge-discharge studies, and the capacitance values were in the range 72-168 F/g depending upon synthesis conditions. The formation mechanism of the nanorods and their impact on the specific capacitance were discussed in detail.

Journal Article↗

Stability and reactivity of all-metal aromatic and antiaromatic systems in light of the principles of maximum hardness and minimum polarizability.

It is demonstrated that among various possible isomers of all-metal aromatic compounds such as Al(4)(2-) and their complexes the most stable isomer with the minimum energy is the hardest and the least polarizable. A similar situation is observed for different isomers of all-metal antiaromatic compounds such as Al(4)(4-) and their complexes. It is shown that linear Al(4)(4-) is energetically more stable than its cyclic isomer. The reaction energies associated with the complexation processes highlight the stability of those complexes. The difference in energy, hardness, and polarizability between a cyclic molecule and its linear counterpart convincingly shows that an aromatic molecule exhibits negative changes in energy and polarizability but positive changes in hardness as expected from the principles of minimum energy, minimum polarizability, and maximum hardness. Although the aromaticity of Al(4)(2-) is unequivocally established through this study, the antiaromaticity picture in the case of Al(4)(4-) is shown to be poorly understood;however, the present analysis sheds light on this controversy.

Journal Article↗

Quantum chemical studies on polythiophenes containing heterocyclic substituents: effect of structure on the band gap.

Color tuning by the tailoring of substituents at the 3-position of thiophene is very encouraging, and comparative experimental and theoretical studies proved to be powerful in the search for a suitable design for the above. Since the novel polythiophene-based materials substituted with five-membered/six-membered ring containing sulphur and nitrogen at different positions are proven to be potential candidates for electron-transporting hole blocking functions, the structure-property relationship of these systems have been focused in the present study. Molecular-orbital calculations are applied to obtain the optimized geometries and band gaps of the thiophene oligomers. An oligomeric approach has been implemented for calculating the band gaps, and the theoretically obtained band gaps for the different model compounds are compared. Density-functional theory B3LYP6-31G* predicted band-gap values are compared with the experimental band gaps obtained from optical-absorption edge. The predicted values show little deviations from experimental band gaps, but the trend in band gap is found to be the same in experimental and theoretical results in most of the cases. Hence, this study illustrates the usefulness of quantum-mechanical calculations in understanding the effects of various structural parameters on optical band gap.

Journal Article↗

QSPR models for polychlorinated biphenyls: n-Octanol/water partition coefficient.

The logarithmic n-octanol/water partition coefficient (logK(ow)) is an important property for pharmacology, toxicology and medicinal chemistry. Quantitative structure-property relationship (QSPR) model for the lipophilic behaviour (logK(ow)) of the data set containing 133 polychlorinated biphenyl (PCB) congeners is analyzed using the conceptual density functional theory based global reactivity parameter such as electrophilicity index (omega) along with energy of lowest unoccupied molecular orbital (E(LUMO)) and number of chlorine substituents (N(Cl)) as descriptors. A reasonably good coefficient of determination (r(2) = 0.914) and the internal predictive ability (r(cv)(2) = 0.909) values are obtained indicating the significance of the considered descriptors in the property analysis of PCBs. Further, the developed method has widespread applicability from chemical reactivity to toxicity analysis and in studies related to various physicochemical properties in the series of dioxins and other polyaromatic hydrocarbons.

Models, Chemical↗

Bowls, balls and sheets of boric acid clusters: the role of pentagon and hexagon motifs.

Ab initio calculations suggest the possibility of forming boric acid clusters in the laboratory. The most stable form of the boric acid dimer contains two hydrogen bonds, similar to the carboxylic acid dimers. Though the trimer and the tetramer form extensions of this geometry, the pentamer prefers a bowl shape. Any addition of boric acid molecules to this geometry leads to bowl-shaped structures with the 15-mer forming a (3/4)buckyball and the 20-mer a full-fledged buckyball. The hexamer, on the other hand, prefers to stay planar as a hexagon-centered rosette. Any further extension of this geometry leads to planar structures as long as a pentagon is not included.

Boric Acids↗

Stabilization of collagen using plant polyphenol: role of catechin.

Collagen, a unique connective tissue protein finds extensive application as biocompatible biomaterial in wound healing, as drug carriers, cosmetics, etc. A work has been undertaken to study the stabilization of type I collagen using the plant polyphenol catechin. Catechin treated collagen fibres showed a shrinkage temperature around 70 degrees C implying that catechin is able to impart thermal stability to collagen. Catechin treated collagen fibres has been found to be stable even after treatment with high concentration of the secondary structural destabilizer, urea. Circular dichroism studies revealed that there is no major alteration in the structure of collagen on treatment with catechin. The study has demonstrated the involvement of hydrogen bonding and hydrophobic interactions as the major forces involved in the stabilization of collagen by the plant polyphenol, catechin.

Animals↗

Electrophilicity as a possible descriptor for toxicity prediction.

Electrophilicity is one of the cardinal chemical reactivity descriptors successfully employed in various molecular reactivity studies within a structure-activity relationship parlance. The applications of this quantity in the modeling of toxicological properties have inspired us to perform a more exhaustive study in order to test and/or to validate the application of electrophilicity in assessing its chemical and toxicological potential. For this reason the toxicity of a large data set of molecules comprising 252 aliphatic compounds on the Tetrahymena pyriformis is studied. A quantitative structure-activity relationship analysis enabled us to model toxicity in terms of global and local electrophilicities, which provide a reasonably good prediction of aliphatic toxicity. It is heartening to note that the global and local electrophilicity values together can explain the toxicity of a large variety of aliphatic compounds nicely without resorting to any other descriptor or other microscopic/macroscopic physicochemical properties as is the situation in all other QSAR studies.

Acids↗

Distribution and partitioning of phosphorus in solid waste and sediments from drainage canals in the industrial belt of Delhi, India.

Phosphorus is an essential and often limiting nutrient in both marine and freshwater ecosystems. However, its oversupply is of great concern in many environments due to its role in eutrophication. The concentration and distribution of sediment bound phosphorus species not only record its input into the environment, but also suggest their possible sources. It is recognized that the features of phosphorus behaviour have not been extensively studied in urban environments. In this study, phosphorus in solid waste and sediments from drainage canals within the industrial belt of Delhi were fractionated into five operationally defined forms, i.e., exchangeable or loosely sorbed phosphorus (Exch-P), Fe-bound phosphorus (Fe-P), authigenic apatite, CaCO3-bound phosphorus and biogenic apatite (Acet-P), detrital apatite (Det-P) and organic-bound phosphorus (Org-P), in order to assess the potential bioavailability status in these systems.

Apatites↗

Asbestos problem in India.

Primary exposure to asbestos in India can be encountered in the form of asbestos mining, asbestos cement industries, asbestos processing unit and during renovation and demolition of old asbestos cemented roof or other structures as well as modern electrical as well as mechanical appliances in which asbestos is still found. Ultimately construction workers, electricians, vehicle mechanics and other workers in the building trades who are exposed to asbestos inhale hundreds and thousands of amphiboles, which causes lung damage. It is being mined in India at places such as Andhra Pradesh (Pulivendla), Jharkand (Roro), Rajasthan (Ajmer, Bhilwara, Udaipur, Rajsamand) and the common problem faced by the locals are asbestosis through air and fluorosis through drinking water. The problem continues to be in India as well as other developing countries. Also, India import and re-export asbestos to other countries and workers at shipyard, transport of the hazardous material on road and roadside residents all are vulnerable to this uncommon disease. The signs and symptoms generally found with the workers are shortness of breath, persistent and productive cough due to pulmonary fibrosis can show up many years after the asbestos exposure.

Asbestos↗

Hydrogen bonding in phenol, water, and phenol-water clusters.

Structure, stability, and hydrogen-bonding interaction in phenol, water, and phenol-water clusters have been investigated using ab initio and density functional theoretical (DFT) methods and using various topological features of electron density. Calculated interaction energies at MP2/6-31G level for clusters with similar hydrogen-bonding pattern reveal that intermolecular interaction in phenol clusters is slightly stronger than in water clusters. However, fusion of phenol and water clusters leads to stability that is akin to that of H(2)O clusters. The presence of hydrogen bond critical points (HBCP) and the values of rho(r(c)) and nabla(2)rho(r(c)) at the HBCPs provide an insight into the nature of closed shell interaction in hydrogen-bonded clusters. It is shown that the calculated values of total rho(r(c)) and nabla(2)rho(r(c)) of all the clusters vary linearly with the interaction energy.

Electrons↗

Electrophilicity index as a possible descriptor of biological activity.

The purpose of this study is to probe the suitability of DFT based chemical reactivity parameter, electrophilicity index as a possible biological activity descriptor in the development of QSAR. Testosterone derivatives with activity described in terms of various biological activity parameters and the estrogen derivatives by relative binding affinity (RBA) values have been selected as model systems. The implications for the ability of electrophilicity to describe the biological activities are discussed. From the results it is possible to observe that electrophilicity index may be suitable to effectively describe the biological activity.

Animals↗

Distribution and fractionation of heavy metals in solid waste from selected sites in the industrial belt of Delhi, India.

Solid waste samples were collected from five small-scale industrial sites in the National Capital Territory (NCT) of Delhi. These industrial sites represent the regional spread of the industrial belt in the NCT of Delhi. Solid waste samples were digested using aqua-regia and HF in air tight teflon bombs for the quantitative analysis of heavy metals (Hg, Pb, Cd, Mn, Fe, Ni, Cu and Zn) by GBC model 902 atomic absorption spectrophotometer. Hg was analysed using hydrid generator attachment. Beside this sequential extraction was used to fractionate five heavy metals (Pb, Ni, Cd, Cu and Zn) into six operationally defined phases, viz. water soluble, exchangeable, carbonate-bound, Fe-Mn oxides, organic-bound and residual fractions to ascertain the relative mobility of these metals. The result obtained showed metal concentration to be in the range of Hg 0.42-2.3; Pb 23-530; Cd 014-224; Mn 494-19 964; Fe 35 684-233 119; Ni 192-1534; Cu 3065-10 144 and Zn 116-23 321 (all units in mg kg(-1)) in all the industrial areas studied. The fractionated toxic metals like Pb, Ni and Cd were observed to be in the range of 25-35, 15-50 and 40-50%, respectively, in mobile or bio-available fractions of solid waste. As this waste is often disposed-off by the roadsides, low lying areas, abandoned quarries or in landfill sites which are often not properly planned, thus posing potential risk to ground and surface water quality to millions of people living downstream.

Environmental Monitoring↗

Nature of distribution of mercury in the sediments of the river Yamuna (tributary of the Ganges), India.

Suspended Particulate Matter (SPM), surface (bed sediments) and short length cores of sediments collected from the largest tributary of the river Ganges, namely the river Yamuna, were analysed for total mercury as well as its fractionation in various size and chemical sites in the sediments following standard procedures. Also, attempts were made to determine the vertical distribution in sediments in relation to the recent timescale of a few decades. Our observations indicate that the SPM in general showed higher levels of total mercury compared to the surface sediments while at places the enhancement could be by a factor of 10, say around 25 microg g(-1) in the downstream region that integrates the industrial midstream and agricultural downstream terrain near its confluence with the Ganges. Surface sediments in the upstream direction near the Himalayan foothills and SPM in the lower reaches showed significant high Index of Geoaccumulation (Igeo) as defined by Müller. Size fractionation studies indicate that the finer fraction preferentially showed higher levels of mercury while in the lower reaches of the river, the total mercury is equitably distributed among all size fractions. The proportion of the residual fraction of mercury in relation to mobile fractions, in general decreases downstream towards its confluence with the Ganges river. In sediment cores, the vertical distribution show systematic peaks of mercury indicating that addition of this toxic metal to the aquatic system is in direct proportion to the increase in various types of human activities such as thermal power plants, land use changes (urbanisation) in the midstream region and intensive fertiliser application in lower reaches of this vast river basin.

Agriculture↗

Release of soluble ICAM-5, a neuronal adhesion molecule, in acute encephalitis.

BACKGROUND: Intercellular adhesion molecule (ICAM)-5 (telencephalin) is an adhesion molecule in telencephalic neurons of the mammalian brain that binds to the leukocyte integrin CD11a/CD18. The authors observed that human cerebral neurons also expressed ICAM-5 and that ICAM-5--mediated neuron--leukocyte binding in cultured hippocampal neurons. This led the authors to examine ICAM-5 expression during clinical CNS inflammation. METHODS: The authors found, by immunoblotting, a 115-kDa soluble form of ICAM-5 (sICAM-5) cleaved from the membrane-bound (130 kDa) ICAM-5, and established an ELISA assay to measure it. CSF samples of patients with acute encephalitis and MS were studied. RESULTS: sICAM-5 was increased in encephalitis (320 plus minus 107 ng/mL; n = 25), as compared with patients with MS (128 plus minus 10 ng/mL; n = 16) and control subjects without CNS disease (137 plus minus 6 ng/mL; n = 42) (p < 0.001). The concentration of sICAM-5 correlated with the performance in the immediate recall task (p = 0.013) and with the leukocyte count in the CSF (p = 0.02), especially in cases caused by herpes simplex virus (HSV) (r = 0.94; p = 0.002). CONCLUSIONS: sICAM-5 is cleaved from CNS into CSF during acute encephalitis, and it may mediate leukocyte--neuron interactions. sICAM-5 release from cerebral neurons may actively regulate immune responses and leukocyte adhesion during microbial neuroinvasion in humans during encephalitis.

Acute Disease↗

Methane emissions from a coastal lagoon: Vembanad Lake, West Coast, India.

An attempt has been made to estimate methane fluxes from a tropical coastal wetland the Vembanad Lake, a lagoon along the West Coast of India. It has been found that Vembanad Lake contributes significant amount of methane to the atmosphere. Average emissions varied spatially within the lake. Methane emissions were 193.2 +/- 24.5 mg m(-2) h(-1) at Kumaragam (fresh water) as compared to 9.3 +/- 9.6 mgm(-2) h(-1) at Pullot (brackish water) site. Seasonal variation was significant between pre- and post-monsoons. Soil temperature, time of the day, salinity sediment organic carbon, all control the rate of methane emissions from the Vembanad Lake.

Ecosystem↗

Fluoride in fractionated soil samples of Ajmer district, Rajasthan.

The natural abundance of fluoride in soils of the Ajmer distict, Rajasthan was examined. From undisturbed soil, the top 15 cm of the profile was examined and the soil split into fractions based on sand, silt and clay particle size. Clay contained a high amount of fluoride, whereas sand and silts are enriched with much less fluoride. The relation between the soil fractions in observed clay fraction fluoride content matched groundwater fluoride variation. However, the enrichment of fluoride material extracted from the largest soil fraction had considerably lower amounts of clay relative to that from the smaller fractions.

Aluminum Silicates↗

A study of the interaction of Cr(III) complexes and their selective binding with B-DNA: a molecular modeling approach.

Molecular modeling and energy minimisation calculations have been used to investigate the interaction of chromium(III) complexes in different ligand environments with various sequences of B-DNA. The complexes are [Cr(salen)(H(2)O)(2)](+); salen denotes 1, 2 bis-salicylideneaminoethane, [Cr(salprn)(H(2)O)(2)](+); salprn denotes 1, 3 bis- salicylideneaminopropane, [Cr(phen)(3)](3+); phen denotes 1, 10 phenanthroline and [Cr(en)(3)](3+); en denotes ethylenediamine. All the chromium(III) complexes are interacted with the minor groove and major groove of d(AT)(12), d(CGCGAATTCGCG)(2) and d(GC)(12) sequences of DNA. The binding energy and hydrogen bond parameters of DNA-Cr complex adduct in both the groove have been determined using molecular mechanics approach. The binding energy and formation of hydrogen bonds between chromium(III) complex and DNA has shown that all complexes of chromium(III) prefer minor groove interaction as the favourable binding mode.

Binding Sites↗