Biomedical subjects

V Vlachy

Publications and source records attributed to V Vlachy.

11 recordsLinked to original sources

PubMed2006

Theoretical aspects and computer simulations of flexible charged oligomers in salt-free solutions.

The structural and thermodynamic properties of a model solution containing flexible charged oligomers and an equivalent number of counterions were studied by means of the canonical Monte Carlo simulation and integral equation theory. The oligomers were represented as freely jointed chains of charged hard spheres. In accordance with the primitive model of electrolyte solutions, the counterions were modeled as charged hard spheres and the solvent as a dielectric continuum. Simulations were performed for a set of model parameters, independently varying the chain length and concentration of the oligomers. Structural properties in the form of pair distribution functions were calculated as functions of model parameters. In addition, thermodynamic properties such as the excess energy of solution and the excess chemical potential of counterions were obtained. These properties were correlated with the conformational averages of oligomers as reflected in the end-to-end distances and radii of gyration obtained from the simulations. The relation with the experimental data for heats of dilution and for the activity coefficient is discussed. Finally, theories based on Wertheim's integral equation approach (product reactant Ornstein-Zernike approach) [J. Stat. Phys. 42, 477 (1986)] in the so-called polymer mean spherical and polymer hypernetted chain approximations were tested against the new and existing computer simulations. For the values of parameters examined in this study, the integral equation theory yields semiquantitative agreement with computer simulations.

Biopolymers↗

PubMed2006

Analysis of osmotic pressure data for aqueous protein solutions via a multicomponent model.

Integral equation theories and Monte Carlo simulations were used to study the Donnan equilibrium, which is established by an equilibrium distribution of a simple electrolyte between an aqueous protein-electrolyte mixture and an aqueous solution of the same simple electrolyte, when these two phases are separated by a semipermeable membrane. In order to describe the unusually low osmotic pressure found in many experiments we assumed that protein molecules can form dimers. The model solution contains proteins in a monomeric form, represented as charged hard spheres, or in a dimerized form, modeled as fused charged hard spheres. The counterions and coions were also modeled as charged hard spheres but of a much smaller size. The associative mean spherical and hypernetted-chain approximations were applied to this model. In addition, Monte Carlo computer simulations were performed for the same model system mimicking a lysozyme solution in the presence of 0.1 M sodium chloride. Theory and simulations were found to be in reasonably good agreement for the thermodynamic properties such as chemical potential and osmotic pressure under these conditions. Using the theoretical approaches mentioned above, we analyzed the experimental data for the osmotic pressure of bovine serum albumin in 0.15 M sodium chloride, human serum albumin solution (HSA) in 0.1 M phosphate buffer, and lysozyme in sulphate and phosphate buffers. The theoretically determined osmotic coefficients were fitted to the existing experimental data in order to obtain the fraction of dimers in solution. Our analysis indicated that there was relatively small self-association of protein molecules for bovine serum albumin solutions at pH=5.4 and 7.3, with the fraction of dimers smaller than 10%, while at pH=4.5 the dimer fraction was equal to 50%. In the case of HSA solutions, strong negative deviations from the ideal value were found and at pH=8.0 a reasonably good agreement between the theory and experiment is obtained by assuming full dimerization. For HSA solution at pH=5.4, the best fit to the experimental results was obtained for a fraction of dimers equal to 80%.

Animals↗

PubMed2006

Confined water: a Mercedes-Benz model study.

We study water that is confined within small geometric spaces. We use the Mercedes-Benz (MB) model of water, in NVT and muVT Monte Carlo computer simulations. For MB water molecules between two planes separated by a distance d, we explore the structures, hydrogen bond networks, and thermodynamics as a function of d, temperature T, and water chemical potential mu. We find that squeezing the planes close enough together leads to a vaporization of waters out of the cavity. This vaporization transition has a corresponding peak in the heat capacity of the water. We also find that, in small pores, hydrogen bonding is not isotropic but, rather, it preferentially forms chains along the axis of the cavity. This may be relevant for fast proton transport in pores. Our simulations show oscillations in the forces between the inert plates, due to water structure, even for plate separations of 5-10 water diameters, consistent with experiments by Israelachvili et al. [Nature 1983, 306, 249]. Finally, we find that confinement affects water's heat capacity, consistent with recent experiments of Tombari et al. on Vycor nanopores [J. Chem. Phys. 2005, 122, 104712].

Computer Simulation↗

PubMed2005

Theoretical study of catalytic effects in micellar solutions.

The catalytic effect of charged micelles as manifested through the increased collision frequency between the counterions of an electrolyte in the presence of such micelles is explored by the Monte Carlo simulation technique and various theoretical approaches. The micelles and ions are pictured as charged hard spheres embedded in a dielectric continuum with the properties of water at 298 K with the charge on micelles varying from zero to z(m) = 50 negative elementary charges. Analytical theories such as (i) the symmetric Poisson-Boltzmann theory, (ii) the modified Poisson-Boltzmann theory, and (iii) the hypernetted-chain integral equation are applied and tested against the Monte Carlo data for micellar ions (m) with up to 50 negative charges in aqueous solution with monovalent counterions (c; z(c) = +1) and co-ions (co; z(co) = -1). The results for the counterion-counterion pair correlation function at contact, g(cc)(sigma(cc)), are calculated in a micellar concentration range from c(m) = 5 x 10(-)(6) to 0.1 mol/dm(3) with an added +1:-1 electrolyte concentration of 0.005 mol/dm(3) (for most cases), and for various model parameters. Our computations indicate that even a small concentration of a highly charged polyelectrolyte added to a +1:-1 electrolyte solution strongly increases the probability of finding two counterions in contact. This result is in agreement with experimental data. For low charge on the micelles (z(m) below -8), all the theories are in qualitative agreement with the new computer simulations. For highly charged micelles, the theories either fail to converge (the hypernetted-chain theory) or, alternatively, yield poor agreement with computer data (the symmetric Poisson-Boltzmann and modified Poisson-Boltzmann theories). The nonlinear Poisson-Boltzmann cell model results yield reasonably good agreement with computer simulations for this system.

Journal Article↗

PubMed2000

Clustering of macroions in solutions of highly asymmetric electrolytes.

In this paper, we present results of computer simulations for a primitive model of asymmetric electrolyte solutions containing macroions, counterions and in a few cases, also co-ions. The results show that the valency of counterions plays an important role in shaping the net interaction between the macroions. For solutions with monovalent counterions, the macroions are distributed at larger distances, and in solutions with divalent counterions, the macroions come closer to each other and share a layer of counterions, whereas, in solutions with trivalent counterions, the macroions form clusters. These clusters dissolve upon dilution or addition of a simple electrolyte. These findings suggest a mechanism whereby the nonuniform distribution of macroions observed experimentally in charged systems may occur.

Colloids↗

PubMed1999

Ionic effects beyond Poisson-Boltzmann theory.

Polyelectrolytes are electrolytes asymmetric both in charge and size. Their properties in solution are dominated by Coulombic forces, and without a detailed understanding of these interactions, no interpretation of experimental data is possible. This paper is a review of recent developments in the theory of highly asymmetric electrolytes of spherical shape resembling surfactant micelles. Three different models are discussed: (a) the cell model, which is focused on the small ion-macroion interaction; (b) the model that treats the solution as an effective one-component fluid of macroions; and (c) the isotropic model, where the solution is represented as a mixture of charged spheres. Traditionally, the electrostatic interactions are accounted for via the solution of the Poisson-Boltzmann equation. This theory, however, ignores the fluctuations around the most probable distribution and may yield poor results for systems with multivalent ions. This paper focuses on developments beyond the Poisson-Boltzmann theory; the results of computer simulations and integral equation theories represent the major part of the review.

Journal Article↗

PubMed1998

Liquid-Vapor Coexistence in the Screened Coulomb (Yukawa) Hard Sphere Binary Mixture in Disordered Porous Media: The Mean Spherical Approximation.

The thermodynamics of a two-component fluid with a hard core interaction and screened Coulomb (Yukawa) interaction between particles, similar to the primitive model of an electrolyte solution, adsorbed in a disordered matrix of hard spheres, is studied by using replica Ornstein-Zernike integral equations and the mean spherical approximation (MSA). The gas-liquid transition is localized. The coexistence curve is investigated dependent on the range of interaction between fluid species, on matrix density, and on fluid-matrix attraction. We have observed shrinking of the coexistence envelope with increasing matrix density. The critical temperature of adsorbed mixture decreases with increasing matrix density. The critical density is less affected; however, it also decreases slightly. The critical temperature is sensitive to the fluid species-matrix attraction and depends nonmonotonously on their strength. For a given matrix microporosity, it increases slightly and then decreases with augmenting strength of fluid-matrix attraction. The critical density is less affected by this attraction. However, it decreases for the model with a sufficiently long-range tail of fluid-matrix attraction. Copyright 1998 Academic Press.

Journal Article↗

PubMed1986

Distribution of ions around DNA, probed by energy transfer.

Measurements of the effect of DNA on rates of bimolecular energy transfer between ions provide a direct indication of how cations cluster in regions near DNA and how anions are repelled from the same regions. Energy transfer from luminescent lanthanide ions (in the "rapid-diffusion" limit) probes collision frequencies that are dependent on the equilibrium spatial distributions of ions. The addition of 1 mM DNA (phosphate) to a 2 mM salt solution increases the overall collision frequency between monovalent cations by a factor of 6 +/- 1.5; it increases the divalent-monovalent cation collision frequency by a factor of 29 +/- 3; and it decreases the divalent cation-monovalent anion collision frequency by a factor of 0.24 +/- 0.03. Comparisons are made with the changes in collision frequencies predicted by several different theoretical descriptions of ion distributions. The closest agreement with experimental results for monovalent ions at 1 mM DNA is obtained with a static accessibility-modified discrete charge calculation, based on a detailed molecular model of B-DNA. At high DNA concentration (10 mM), the best results are obtained by numerical solutions of the Poisson-Boltzmann equation for a "soft-rod" model of DNA. Poisson-Boltzmann calculations for a "hard-rod" model greatly overestimate the effects of DNA on collision frequencies, as does a calculation based on counterion-condensation theory.

Animals↗

PubMed1978

Thermodynamics of the isothermal interaction of human immunoglobulin G with guanidinium chloride.

A thermodynamic study of the isothermal interaction of human immunoglobulin G with guanidinium chloride, a strong denaturant, has been performed. Free energies of interaction were calculated using preferential binding data obtained by measuring densities at constant chemical potential and constant composition, respectively. Enthalpies of interaction were determined calorimetrically. The values of both thermodynamic parameters as well as those of entropies of interaction have been found to depend crucially on the extent of denaturant binding.

Guanidines↗

PubMed1977

Thermodynamics of the isothermal interaction of beta-lactoglobulin with guanidinium chloride and urea.

A thermodynamic study of the isothermal interaction of beta-lactoglobulin with guanidinium chloride and urea has been performed. Enthalpies of interaction of the two denaturants have been obtained by calorimetric measurements, and the free energy of interaction calculated from previously determined preferential binding of denaturants. In separate dilatometric experiments the volume changes accompanying the interaction of guanidinium chloride with beta-lactoglobulin have also been determined.

Binding Sites↗

PubMed1976

Thermodynamics of the isothermal denaturation of lysozyme by guanidinium chloride.

A thermodynamic analysis of the isothermal denaturation of lysozyme by guanidinium chloride has been performed. The analysis is based on the equation which relates the equilibrium constant for denaturation to the preferential binding of denaturant. The equation has been derived previously by thermodynamic methods, whereas in this article a derivation based on statistical mechanics is given. By application of the equation the free energy of denaturation is first calculated and from it, by subtracting the calorimetrically-determined enthalpy of denaturation, the entropy of denaturation is determined.

Binding Sites↗