Biomedical subjects

Valérie Vallet

Publications and source records attributed to Valérie Vallet.

13 recordsLinked to original sources

PubMed2006

Ab initio study of a Bi3+ impurity in Cs2NaYCl6 and Y2O3: comparison of perturbative and variational electron correlation methods.

Ab initio study of excitation energies and oscillator strengths for absorption towards the (3)P(1) and (1)P(1) states of the Bi(3+) ion has been performed for the Bi(3+) ion in gas phase and as a dopant of the cubic elpasolite Cs(2)NaYCl(6) and the yttria Y(2)O(3) crystal using the ab initio embedded-cluster method. The ground and excited states were computed with a relativistic spin-orbit configuration interaction approach suited for heavy elements. Electron correlation was treated in the scalar relativistic scheme with perturbative, variational, and coupled-cluster methods. Intermediate coupling is included via an effective-Hamiltonian based spin-orbit configuration interaction approach. Small-core (60 electrons) and large-core (78 electrons) relativistic effective core potentials (ECPs) have been used to describe the bismuth ion. The best match with experiment was obtained with the small-core ECP. The accuracy of excitation energies strongly depends on the electron correlation method used. The agreement between experimental data and the results obtained using second-order multiconfigurational perturbation theory is greatly improved with the shifted zeroth-order Hamiltonian proposed by Ghido et al. [Chem. Phys. Lett. 396, 142 (2004)]. Although quite time consuming, coupled-cluster and variational methods yield good agreement with experimental data. The first absorption band recorded for the doped elpasolite crystal is positioned with an excellent accuracy while the computed energy of the second absorbing manifold is in poorer agreement with experimental data. This suggests that interactions with neglected close-lying excited states with a ligand-to-metal charge transfer character may be significant. Calculations of the spectrum of Bi(3+) doping yttria in both the S(6) and C(2) site symmetries indicate that the absorbing manifold arises from electronic excitations localized on the Bi(3+) doping ion with main triplet 6s6p character. Our results predict the first absorbing peak to lie about 0.5 eV lower for the S(6) sites than for the C(2) site, thus attributing the violet and the green emission wavelengths to the S(6) and C(2) sites, respectively. A subsequent study of Stokes shift and emission wavelength should hopefully lead to a final assignment of the measured excitation spectra.

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PubMed2006

Calculation of the vibronic structure of the photodetachment spectra of CCCl- and CCBr-.

The vibronic structure of the closely spaced and strongly coupled X 2Sigma+ and A 2Pi states in the photodetachment spectra of CCCl- and CCBr- has been calculated by considering Sigma-Pi vibronic coupling together with spin-orbit coupling. The stretching modes are treated within the so-called linear-vibronic-coupling model. The vibronic and spin-orbit parameters have been determined by accurate ab initio electronic-structure calculations. While the nonrelativistic vibronic-coupling parameters are of approximately equal strength in CCCl and CCBr, the vibronic-coupling parameters of spin-orbit origin are found to be larger in the latter. The calculated photodetachment spectra of both systems are shown to exhibit a complicated vibronic structure due to strong Sigma-Pi vibronic coupling. The spectral envelopes of the calculated photodetachment spectra exhibit a double-hump reminiscent of strongly coupled Exe Jahn-Teller systems.

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PubMed2006

Investigation of the dynamics of two coupled oscillators with mixed quantum-classical methods.

The dynamics of two coupled oscillators can become quite complex if anharmonic potential energy functions are employed. This type of system therefore represents a good model for an investigation of the performance of mixed quantum-classical methods. In this work, the motion of two coupled particles with a mass ratio of one to ten is studied with three different mixed quantum-classical methods in the presence of anharmonic potential terms for a comparison with exact quantum mechanical calculations. The mixed quantum-classical approaches include the multitrajectory Ehrenfest, the mixed quantum-classical Bohmian (MQCB), and the so-called coupled Schrödinger equations (CSE) formalisms. The analysis shows that while the description of a weakly anharmonic system by the Ehrenfest and MQCB schemes is accurate if proper sampling techniques are applied, both approximations break down rapidly if the anharmonic terms are increased. The performance of the simple CSE prescription, which corresponds to a reduction of the full two-dimensional wave function to two one-dimensional wave functions representing two quantum oscillators coupled via the potential energy in a classical fashion, decreases if the width of the initial wave packet is enlarged. The dependence of the CSE method on the diffuseness of the initial wave packet is therefore opposite to that of the MQCB method, which is more accurate for wide wave packets. Overall, the multitrajectory Ehrenfest ansatz is found to be most successful in reproducing the exact quantum results.

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PubMed2006

Calculation of the vibronic structure of the X2Pi photoelectron spectra of XCN, X=F, Cl, and Br.

The vibronic structure of the photoelectron spectra of the X (2)Pi state of XCN(+) (X=F, Cl, and Br) has been calculated, assuming that the X (2)Pi state can be considered as an isolated electronic state. The Renner-Teller coupling of the two components of the (2)Pi state via the degenerate bending mode as well as spin-orbit coupling effects are taken into account. The two stretching modes are treated within the so-called linear vibronic-coupling model. The vibronic and spin-orbit parameters have been determined by accurate ab initio electronic-structure calculations. While spin-orbit effects are small in FCN(+), the large spin-orbit splitting of the X (2)Pi state of the BrCN(+) leads to a complete quenching of the Renner-Teller effect. The X (2)Pi state of the ClCN(+) is shown to be of particular interest: here the resonance condition for linear-relativistic Renner-Teller coupling is approximately fulfilled. This coupling mechanism leads to a significant intensity transfer to vibronic levels with odd quanta of the bending mode. The calculated spectrum indicates that this novel relativistic vibronic-coupling effect should be observable in high-resolution (electron energy resolution of the order of a few meV) photoelectron spectra of ClCN.

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PubMed2005

Photochemistry of pyrrole: time-dependent quantum wave-packet description of the dynamics at the 1pi sigma*-S0 conical intersections.

The photoinduced hydrogen-elimination reaction in pyrrole via the conical intersections of the two (1)pi sigma(*) excited states with the electronic ground states [(1)B(1)(pi sigma(*))-S(0) and (1)A(2)(pi sigma(*))-S(0)] have been investigated by time-dependent quantum wave-packet calculations. Model potential-energy surfaces of reduced dimensionality have been constructed on the basis of accurate multireference ab initio electronic-structure calculations. For the (1)B(1)-S(0) conical intersection, the model includes the NH stretching coordinate as the tuning mode and the hydrogen out-of-plane bending coordinate as the coupling mode. For the (1)A(2)-S(0) conical intersection, the NH stretching coordinate and the screwing coordinate of the ring hydrogens are taken into account. The latter is the dominant coupling mode of this conical intersection. The electronic population-transfer processes at the conical intersections, the branching ratio between the dissociation channels, and their dependence on the initial preparation of the system have been investigated for pyrrole and deuterated pyrrole. It is shown that the excitation of the NH stretching mode strongly enhances the reaction rate, while the excitation of the coupling mode influences the branching ratio of different dissociation channels. The results suggest that laser control of the photodissociation of pyrrole via mode-specific vibrational excitation should be possible. The calculations provide insight into the microscopic details of ultrafast internal-conversion processes in pyrrole via hydrogen-detachment processes, which are aborted at the (1)pi sigma(*)-S(0) conical intersections. These mechanisms are of relevance for the photostability of the building blocks of life (e.g., the DNA bases).

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PubMed2005

Time-dependent quantum wave-packet description of the 1pi sigma* photochemistry of phenol.

The photoinduced hydrogen elimination reaction in phenol via the conical intersections of the dissociative 1pi sigma* state with the 1pi pi* state and the electronic ground state has been investigated by time-dependent quantum wave-packet calculations. A model including three intersecting electronic potential-energy surfaces (S0, 1pi sigma*, and 1pi pi*) and two nuclear degrees of freedom (OH stretching and OH torsion) has been constructed on the basis of accurate ab initio multireference electronic-structure data. The electronic population transfer processes at the conical intersections, the branching ratio between the two dissociation channels, and their dependence on the initial vibrational levels have been investigated by photoexciting phenol from different vibrational levels of its ground electronic state. The nonadiabatic transitions between the excited states and the ground state occur on a time scale of a few tens of femtoseconds if the 1pi pi*-1pi sigma* conical intersection is directly accessible, which requires the excitation of at least one quantum of the OH stretching mode in the 1pi pi* state. It is shown that the node structure, which is imposed on the nuclear wave packet by the initial preparation as well as by the transition through the first conical intersection (1pi pi*-1pi sigma*), has a profound effect on the nonadiabatic dynamics at the second conical intersection (1pi sigma*-S0). These findings suggest that laser control of the photodissociation of phenol via IR mode-specific excitation of vibrational levels in the electronic ground state should be possible.

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PubMed2004

Experimental and quantum chemical studies of structure and reaction mechanisms of dioxouranium(VI) complexes in solution.

This perspective article describes the combination of experimental data and quantum chemical methods for the determination of structure and reaction mechanisms of uranyl(vi) complexes in aqueous solution. The first part assesses the accuracy of the chemical and thermodynamic properties of solvated uranyl(vi) complexes as obtained by various quantum chemical methods. The second part discusses structure determination, mechanisms for ligand exchange and the lability of coordinated water molecules for various uranyl(vi) complexes using a combination of NMR and quantum chemical data.

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PubMed2004

Can density functional methods be used for open-shell actinide molecules? Comparison with multiconfigurational spin-orbit studies.

The geometries, electronic structures, and vibrational frequencies of two isoelectronic compounds PuO(2)(2+) and PuN(2) have been studied in detail at the density functional theory (DFT) and multiconfigurational ab initio levels of theory. Dynamic correlation was taken into account using second-order perturbation theory (CASPT2) and the variational difference-dedicated configuration interaction method for comparison with the results of the DFT study. Spin-orbit effects were included within the framework of an effective uncontracted spin-orbit configuration-interaction method which considers electron correlation effects and spin-orbit coupling on equal footing. The twelve lowest f-f electronic transitions are reported. The electronic ground state of both systems is found to be the Omega=4 component of (3)H(g). We thus disagree with an earlier assignment of the ground state of PuN(2) [E. F. Archibong and A. K. Ray, J. Mol. Struct: THEOCHEM 530, 165 (2000)]. Spin-orbit effects are small on both the geometry and vibrational frequencies of the ground states of PuO(2)(2+) and PuN(2), but they completely change the distribution of electronically excited states. A comparison of results obtained with the two classes of methods allows us to demonstrate that an unambiguous assignment of the electronic ground state and electronic spectra requires the use of multireference methods including spin-orbit coupling. Single-reference methods such as DFT provide a reasonable description of the electronic properties of ground states of these open-shell systems, and therefore also of their structural and vibrational properties. The experimental antisymmetric stretching frequency of matrix-isolated PuN(2) is reproduced well by both CASPT2 and DFT calculations; generalized gradient approximation formulations of DFT are more successful than hybrid versions in this respect. Ground-state properties of UO(2) (2+), UN(2), UO(2), PuO(2) (2+), and PuN(2) are compared and discussed.

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PubMed2004

The mechanism of water exchange in AmO2(H2O)5(2+) and in the isoelectronic UO2(H2O)5(+) and NpO2(H2O)5(2+) complexes as studied by quantum chemical methods.

The water exchange mechanism for AmO2(H2O)52+ and the isoelectronic UO2(H2O)5+ and NpO2(H2O)52+ ions has been investigated using quantum chemical methods and compared to previous findings in the uranyl(VI) system (Vallet, V. et al. J. Am. Chem. Soc. 2001, 123, 11999). There are substantial and predictable changes in the geometry and preferred exchange pathways between uranyl(V) and the different actinyl(VI) complexes. The smaller charge on the uranyl(V) center makes the dissociative pathway more favorable than the associative/interchange pathways in the actinyl(VI) systems.

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PubMed2004

Time-dependent quantum wave-packet description of the 1pi sigma* photochemistry of pyrrole.

The photoinduced hydrogen elimination reaction in pyrrole via the conical intersection of the 1B1 (1pi sigma*) excited state with the electronic ground state has been investigated by time-dependent quantum wave-packet dynamics. A two-dimensional model potential-energy surface has been constructed as a function of the NH stretching and the hydrogen out-of-plane bending mode, employing multi-reference ab initio electronic-structure methods. The branching ratio of the reactive flux at the conical intersection has been investigated in dependence on the initial vibrational state of the molecule. The results suggest that laser control of the photodissociation of pyrrole via mode-specific vibrational excitation should be possible.

Kinetics↗

PubMed2003

Chelate effect and thermodynamics of metal complex formation in solution: a quantum chemical study.

The accuracy of quantum chemical predictions of structures and thermodynamic data for metal complexes depends both on the quantum chemical methods and the chemical models used. A thermodynamic analogue of the Eigen-Wilkins mechanism for ligand substitution reactions (Model A) turns out to be sufficiently simple to catch the essential chemistry of complex formation reactions and allows quantum chemical calculations at the ab initio level of thermodynamic quantities both in gas phase and solution; the latter by using the conductor-like polarizable continuum (CPCM) model. Model A describes the complex formation as a two-step reaction: 1. [M(H2O)x](aq) + L(aq) <==>[M(H2O)x], L(aq); 2. [M(H2O)x], L(aq) <==>[M(H2O)(x-1)L],(H2O)(aq). The first step, the formation of an outer-sphere complex is described using the Fuoss equation and the second, the intramolecular exchange between an entering ligand from the second and water in the first coordination shell, using quantum chemical methods. The thermodynamic quantities for this model were compared to those for the reaction: [M(H2O)x](aq) + L(aq) <==>[M(H2O)(x-1)L](aq) + (H2O)(aq) (Model B), as calculated for each reactant and product separately. The models were tested using complex formation between Zn(2+) and ammonia, methylamine, and ethylenediamine, and complex formation and chelate ring closure reactions in binary and ternary UO(2)(2+)-oxalate systems. The results show that the Gibbs energy of reaction for Model A are not strongly dependent on the number of water ligands and the structure of the second coordination sphere; it provides a much more precise estimate of the thermodynamics of complex formation reactions in solution than that obtained from Model B. The agreement between the experimental and calculated data for the formation of Zn(NH(3))(2+)(aq) and Zn(NH(3))(2)(2+)(aq) is better than 8 kJ/mol for the former, as compared to 30 kJ/mol or larger, for the latter. The Gibbs energy of reaction obtained for the UO(2)(2+) oxalate systems using model B differs between 80 and 130 kJ/mol from the experimental results, whereas the agreement with Model A is better. The errors in the quantum chemical estimates of the entropy and enthalpy of reaction are somewhat larger than those for the Gibbs energy, but still in fair agreement with experiments; adding water molecules in the second coordination sphere improves the agreement significantly. Reasons for the different performance of the two models are discussed. The quantum chemical data were used to discuss the microscopic basis of experimental enthalpy and entropy data, to determine the enthalpy and entropy contributions in chelate ring closure reactions and to discuss the origin of the so-called "chelate effect". Contrary to many earlier suggestions, this is not even in the gas phase, a result of changes in translation entropy contributions. There is no simple explanation of the high stability of chelate complexes; it is a result of both enthalpy and entropy contributions that vary from one system to the other.

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PubMed2003

Structure and bonding in solution of dioxouranium(VI) oxalate complexes: isomers and intramolecular ligand exchange.

Structural isomers of [UO(2)(oxalate)(3)](4-), [UO(2)(oxalate)F(3)](3-), [UO(2)(oxalate)(2)F](3-), and [UO(2)(oxalate)(2)(H(2)O)](2-) have been studied by using EXAFS and quantum chemical ab initio methods. Theoretical structures and their relative energies were determined in the gas phase and in water using the CPCM model. The most stable isomers according to the quantum chemical calculations have geometries consistent with the EXAFS data, and the difference between measured and calculated bond distances is generally less than 0.05 A. The complex [UO(2)(oxalate)(3)](4-) contains two oxalate ligands forming five-membered chelate rings, while the third is bonded end-on to a single carboxylate oxygen. The most stable isomer of the other two complexes also contains the same type of chelate-bonded oxalate ligands. The activation energy for ring opening in [UO(2)(oxalate)F(3)](3-), deltaU++ = 63 kJ/mol, is in fair agreement with the experimental activation enthalpy, deltaH++ = 45 +/- 5 kJ/mol, for different [UO(2)(picolinate)F(3)](2-) complexes, indicating similar ring-opening mechanisms. No direct experimental information is available on intramolecular exchange in [UO(3)(oxalate)(3)](4-). The theoretical results indicate that it takes place via the tris-chelated intermediate with an activation energy of deltaU++ = 38 kJ/mol; the other pathways involve multiple steps and have much higher activation energies. The geometries and energies of dioxouranium(VI) complexes in the gas phase and solvent models differ slightly, with differences in bond distance and energy of typically less than 0.06 A and 10 kJ/mol, respectively. However, there might be a significant difference in the distance between uranium and the leaving/entering group in the transition state, resulting in a systematic error when the gas-phase geometry is used to estimate the activation energy in solution. This systematic error is about 10 kJ/mol and tends to cancel when comparing different pathways.

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PubMed2002

Rates and mechanism of fluoride and water exchange in UO(2)F(5)(3-) and [UO(2)F(4)(H(2)O)](2-) studied by NMR spectroscopy and wave function based methods.

The reaction mechanism for the exchange of fluoride in UO(2)F(5)(3-) and UO(2)F(4)(H(2)O)(2-) has been investigated experimentally using (19)F NMR spectroscopy at -5 degrees C, by studying the line broadening of the free fluoride, UO(2)F(4)(2-)(aq) and UO(2)F(5)(3-), and theoretically using quantum chemical methods to calculate the activation energy for different pathways. The new experimental data allowed us to make a more detailed study of chemical equilibria and exchange mechanisms than in previous studies. From the integrals of the different individual peaks in the new NMR spectra, we obtained the stepwise stability constant K(5) = 0.60 +/- 0.05 M(-1) for UO(2)F(5)(3-). The theoretical results indicate that the fluoride exchange pathway of lowest activation energy, 71 kJ/mol, in UO(2)F(5)(3-) is water assisted. The pure dissociative pathway has an activation energy of 75 kJ/mol, while the associative mechanism can be excluded as there is no stable UO(2)F(6)(4-) intermediate. The quantum chemical calculations have been made at the SCF/MP2 levels, using a conductor-like polarizable continuum model (CPCM) to describe the solvent. The effects of different model assumptions on the activation energy have been studied. The activation energy is not strongly dependent on the cavity size or on interactions between the complex and Na(+) counterions. However, the solvation of the complex and the leaving fluoride results in substantial changes in the activation energy. The mechanism for water exchange in UO(2)F(4)(H(2)O)(2-) has also been studied. We could eliminate the associative mechanism, the dissociative mechanism had the lowest activation energy, 39 kJ/mol, while the interchange mechanism has an activation energy that is approximately 50 kJ/mol higher.

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