Biomedical subjects
Publications and source records attributed to Vincent Lynch.
Oxidative coupling of a tetraalkylbipyrrole under FeIII-mediated coupling conditions in the presence of HCl results in a mixture of cyclo[6]- and cyclo[7]pyrroles, as well as the known cyclo[8]pyrrole. This "matched set" of heteroannulenes was analyzed by spectroscopic, electrochemical, and X-ray diffraction methods.
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Two preorganized bis-zinc receptors (2 and 3) were synthesized wherein the metals were ligated with ligands present in natural phosphodiesterases: imidazoles and carboxylates. The intrametallic distance is near 4.5 A, that found in natural nucleases and other successful artificial nucleases. With only two imidazoles (2), the zinc binding affinities were not high enough to achieve cooperativity. Yet, with a third ligand, a carboxylate (3), cooperativity was found in the cleavage of HPNPP. The preorganization of 3 was achieved using a "steric gearing" strategy. The enhancement was 80-fold for cooperation between the two metals relative to a mono-metallic analogue (5). However, there was no observable enhancement in the hydrolysis of RNA using 3 relative to 5. Therefore, we conclude that placing two zinc atoms that are ligated with natural ligands at the appropriate distance for catalysis is not sufficient to enhance the cleavage of RNA, but is successful for activated RNA substrate mimics.
A strategy for the enantioselective catalysis of photomediated reactions in solution is described, involving the use of chiral molecular receptors possessing appendant triplet-sensitizing moieties. Energy transfer is selectively directed to bound substrate as a consequence of the distance dependence of triplet-triplet energy transfer. This effect, which is equivalent to a binding-induced rate enhancement, enables substoichiometric chirality transfer from the receptor template to the substrate, as observed in the intramolecular enone-olefin photo[2 + 2]cycloaddition of a quinolone substrate.
In the presence of phenylsilane and 5 mol % cobalt(II) bis(2,2,6,6-tetramethylheptane-3,5-dionate), aryl-substituted monoenone monoaldehydes and bis(enones) undergo reductive cyclization to afford syn-aldol and anti-Michael products, respectively. For both aldol and Michael cycloreductions, five- and six-membered ring formation occurs in good yield with high levels of diastereoselectivity. Cycloreduction of monoenone monoaldehyde 1a in the presence of d(3)-phenylsilane reveals incorporation of a single deuterium at the enone beta-position as an equimolar mixture of epimers, inferring rapid isomerization of the kinetically formed cobalt enolate prior to cyclization. The deuterated product was characterized by single-crystal neutron diffraction analysis. For bis(enone) substrates, modulation of the silane source enables partitioning of the competitive Michael cycloreduction and [2 + 2] cycloaddition manifolds. A study of para-substituted acetophenone-derived bis(enones) reveals that substrate electronic features also direct partitioning of cycloreduction and cycloaddition manifolds. Further mechanistic insight is obtained through examination of the effects of enone geometry on product stereochemistry and electrochemical studies involving cathodic reduction of bis(enone) substrates. The collective experiments reveal competitive enone reduction pathways. Enone hydrometalation produces metallo-enolates en route to aldol and Michael cycloreduction products, that is, products derived from coupling at the alpha-position of the enone. Electron-transfer-mediated enone reduction produces metallo-oxy-pi-allyls en route to [2 + 2] cycloadducts and, under Ni catalysis, homoaldol cycloreduction products, that is, products derived from coupling at the beta-position of the enone. The convergent outcome of the metal-catalyzed and electrochemically induced transformations suggests the proposed oxy-pi-allyl intermediates embody character consistent with the mesomeric metal-complexed anion radicals.
The preparation of first-row transition-metal complexes of texaphyrin, a porphyrin-like, monoanionic penta-aza macrocyclic ligand, is reported. Specifically, the synthesis of organic-soluble Mn(II) (1), Co(II) (2), Ni(II) (3), Zn(II) (4), and Fe(III) (5) texaphyrin derivatives and their water-soluble counterparts (6-10) from appropriate metal-free, nonaromatic macrocyclic precursors is described. It was found that metal cations of sufficient reduction potential could act to oxidize the nonaromatic macrocyclic precursor in the course of metal insertion. Complexes were characterized by X-ray diffraction analysis, electrochemistry, flash photolysis, and EPR spectroscopy. The structural and electronic properties of these "expanded porphyrin" complexes are compared with those of analogous porphyrins. Notably, the texaphyrin ligand is found to support the complexation of cations in a lower valence and a higher spin state than do porphyrins. Interactions between the coordinated cation and the ligand pi system appear to contribute to the overall bonding. Texaphyrin complexes of Mn(II), Co(II), and Fe(III) in particular may possess sufficient aqueous stability to permit their use in pharmaceutical applications.
The synthesis and structural characterization of hybrid heterocalix[4]arene analogues containing pyrrole, benzene, methoxy-substituted benzene, and pyridine subunits is described. Macrocycles 1 and 2, examples of calix[2]benzene[2]pyrrole and calix[1]benzene[3]pyrrole systems, respectively, are synthesized by the condensation of pyrrole and an appropriate phenylbis(carbinol). Macrocycles 3 and 7, examples of calix[2]benzene[1]pyridine[1]pyrrole and calix[1]pyridine[3]pyrrole, respectively, are synthesized by the use of a carbene-based pyrrole-to-pyridine ring-expansion procedure. Single-crystal X-ray analysis reveals that compounds 1a, 1b, and 2b adopt 1,3-alternate conformations in the solid state, whereas compounds 3 and 7 display structures that are best described as "flattened partial cones" in terms of their conformation. (Series a refers to pure benzene-derived systems, whereas series b indicates macrocycles containing 5-methoxyphenyl subunits). In the solid state, the methoxy-functionalized macrocycles 1b and 2b, and the chloropyridine-containing macrocycle 7 exist as dimers. In the case of 1a and 7, these compounds interact with neutral solvent in the solid state. The conformations of the macrocycles in solution were explored by temperature-dependent proton NMR and NOESY spectral analysis. At 188 K, macrocycles 1a and 2a adopt flattened 1,3-alternate conformations, whereas macrocycles 3 and 7 exist in the form of flattened partial-cone conformations. Standard proton NMR titration analyses were carried out in the case of macrocycles 1a and 2a, and reveal that at least the second of these systems is capable of binding fluoride and chloride anions in CD(2)Cl(2) solution at room temperature (K(a)=571 and 17M(-1) in the case of 2a and F(-) and Cl(-), respectively).
[reaction: see text] The anion radicals of certain bis(enones), generated by cathodic reduction, are observed to participate in intramolecular cyclobutanation, yielding bicyclo[3.2.0]heptane derivatives through an anion radical chain mechanism. Evidence for stepwise cycloaddition involving distonic anion radical intermediates is presented. In addition to the novel anion radical cyclobutanations, an unprecedented intramolecular anion radical Diels-Alder product is observed. Parallel trends in substrate scope vis-à-vis the Co-catalyzed bis(enone) cyclobutanation are discussed.
The synthesis, characterization, and X-ray structure of a heptapyrrolic macrocycle, [30]heptaphyrin(1.1.1.1.1.0.0) is reported; despite showing aromatic features, it exhibits a 'figure eight'-like structure in the solid state.
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The synthesis of 16,20-dipropyl-2,3,6,7,10,11,15,21-octamethyl-[22]pentaphyrin-(1.1.1.0.0) (8), a stable isomer of smaragdyrin ([22]pentaphyrin(1.1.0.1.0)), and 9, a furan-containing analogue of 8, are reported. These two new expanded porphyrins were characterized in solution using UV-vis and (1)H and (13)C NMR spectroscopic means and in the solid state via single-crystal X-ray diffraction analysis.
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