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Virginia R de Sa

Publications and source records attributed to Virginia R de Sa.

3 recordsLinked to original sources

Homeostatic synaptic scaling in self-organizing maps.

Various forms of the self-organizing map (SOM) have been proposed as models of cortical development [Choe Y., Miikkulainen R., (2004). Contour integration and segmentation with self-organized lateral connections. Biological Cybernetics, 90, 75-88; Kohonen T., (2001). Self-organizing maps (3rd ed.). Springer; Sirosh J., Miikkulainen R., (1997). Topographic receptive fields and patterned lateral interaction in a self-organizing model of the primary visual cortex. Neural Computation, 9(3), 577-594]. Typically, these models use weight normalization to contain the weight growth associated with Hebbian learning. A more plausible mechanism for controlling the Hebbian process has recently emerged. Turrigiano and Nelson [Turrigiano G.G., Nelson S.B., (2004). Homeostatic plasticity in the developing nervous system. Nature Reviews Neuroscience, 5, 97-107] have shown that neurons in the cortex actively maintain an average firing rate by scaling their incoming weights. In this work, it is shown that this type of homeostatic synaptic scaling can replace the common, but unsupported, standard weight normalization. Organized maps still form and the output neurons are able to maintain an unsaturated firing rate, even in the face of large-scale cell proliferation or die-off. In addition, it is shown that in some cases synaptic scaling leads to networks that more accurately reflect the probability distribution of the input data.

Animals↗

A model of surround suppression through cortical feedback.

Surround suppression occurs when a visual stimulus outside a neuron's classical receptive field causes a reduction in firing rate. It has become clear that several mechanisms are working together to induce center-surround effects such as surround suppression. While several models exist that rely on lateral connections within V1 to explain surround suppression, few have been proposed that show how cortical feedback might play a role. In this work, we propose a theory in which reductions in excitatory feedback contribute to a neuron's suppressed firing rate. We also provide a computational model that incorporates this idea.

Animals↗

On selecting features from splice junctions: an analysis using information theoretic and machine learning approaches.

The computational recognition of precise splice junctions is a challenge faced in the analysis of newly sequenced genomes. This is challenging due to the fact that the distribution of sequence patterns in these regions is not always distinct. Our objective is to understand the sequence signatures at the splice junctions, not simply to create an artificial recognition system. We use a combination of a neural network based calliper randomization approach and an information theoretic based feature selection approach for this purpose. This has been done in an effort to understand regions that harbor information content and to extract features relevant for the prediction of splice junctions. The analysis using the neural network based calliper randomization approach revealed regions important in the internal representation of the network model. The calliper approach captured both correlated as well as independently important features. The feature selection approach captures features that are independently informative. The two different methods can capture features with different properties. Comparative analysis of the results using both the methods help to infer about the kind of information present in the region.

Alternative Splicing↗