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Biomedical subjects

W J Canady

Publications and source records attributed to W J Canady.

At least 19 recordsLinked to original sources
PubMed1993

Aromatic hydrocarbon binding to cytochrome P450 and other enzyme binding sites: are hydrophobic compounds drawn into the active site or pushed from the aqueous phase?

The subject of hydrocarbon inhibition of cytochrome P450-dependent reactions as well as data on other enzyme-catalyzed reactions from the literature was examined to determine the relationship between the "hydrophobicity" of the hydrocarbons and their ability to act as inhibitors. The compounds used in these studies (benzene, toluene, ethylbenzene, n-propylbenzene, and n-butylbenzene) behave as competitive inhibitors, with the affinity increasing as the size of the inhibiting hydrocarbon increases. A similarity was seen in the size dependence for both hydrocarbon inhibition of cytochrome P450-dependent activities (-0.6 to -0.7 kcal/mol/methylene group) and transfer of these compounds between aqueous and organic phases (-0.68 kcal/mol/methylene group), suggesting that the active site of cytochrome P450, in some ways, is comparable to an organic solvent in its ability to accommodate hydrophobic compounds. A more detailed examination of this process was initiated to separate the "hydrophobic effect" into its two component processes: (i) hydration of the hydrocarbon ligand and (ii) transfer of the unhydrated hydrocarbon onto the enzyme active site. In other words, do larger hydrocarbons bind more avidly to the active site because they are drawn more effectively into that site (pull), or is the size-dependent increase in hydrocarbon binding the result of the larger compounds being more efficiently expelled from the aqueous medium (push)? The results indicate that the predominant force involved in binding is the ability of the active site of cytochrome P450 and an impressive number of other enzymes to draw the hydrocarbon from the aqueous medium. The hydration of the hydrocarbon is much less dependent on the size of the hydrocarbon, indicating that dehydration or partial dehydration of the hydrocarbon molecule (upon leaving the solution and combining with the enzyme) contributes to the overall binding process to a much lesser extent; hydrophobic binding in the most widely used sense (entropy driven) is not the primary driving force that is responsible for the observed size dependence effects. It is pointed out that not all types of binding would be expected to follow the law which describes the size dependence for simple hydrocarbons because of heat-entropy relationships. The different temperature dependence of these heat-entropy relationships further complicates the analogy between enzyme-ligand binding and ligand partitioning between aqueous and organic phases. The maximum contribution that can be attributed to entropy driven hydrophobic binding (in the most widely used sense) is -0.1 to -0.2 kcal/mol/methylene group for the aromatic hydrocarbons examined here.

Animals↗
PubMed1992

Solvation effects upon the thermodynamic substrate activity; correlation with the kinetics of enzyme catalyzed reactions. I. Effects of added reagents such as methanol upon alpha-chymotrypsin.

Solvents, detergents, etc., have often been added to the medium to study the kinetics of enzyme action and for binding studies. They have been employed for diverse reasons such as solubilization of substrates or to stabilize an enzyme that was originally membrane bound. Thermodynamic considerations dictate that any added substance, such as methanol, which is present in significant quantity must affect the thermodynamic activities of the enzyme, enzyme-substrate complex, substrate and any other intermediates although cancellation effects may occur in this regard. The influence upon substrate activities is the only one that is easily experimentally accessible. These effects are shown, from the data of Bernard and Laidler, to be large in the case of the alpha-chymotrypsin catalyzed hydrolysis of methylhydrocinnamate. The variation of the Michaelis-Menten constant is quantitatively explainable in terms of the alteration of the thermodynamic activity of the substrate by methanol.

Catalysis↗
PubMed1992

Solvation effects upon the thermodynamic substrate activity; correlation with the kinetics of enzyme catalyzed reactions. II. More complex interactions of alpha-chymotrypsin with dioxane and acetone which are also competitive inhibitors.

It is shown that the effects of the addition of various amounts of dioxane and acetone (solvent modifiers) upon the alpha-chymotrypsin-catalyzed hydrolysis of methylhippurate can be explained in terms of three factors. (A) The effects of the above modifiers on the chemical potential of the substrate. (B) The solvent modifiers dioxane and acetone also act as classical competitive inhibitors. The means of sorting out these contributions is presented. (C) The alterations of the chemical potentials or for free energies of the enzyme, enzyme-substrate complex, and/or other intermediates by the added modifiers appear to cancel out with the substrate used here.

Acetone↗
PubMed1986

Association of hydrophobic substances with hemin. Characterization of the reverse type I binding spectrum and its relationship to cytochrome P-450.

When hydrophobic compounds were added to a solution of protoferriheme, a a reverse type I spectral change was produced when observed by difference spectroscopy. The spectrum had a peak at 422 nm and a trough at 387 nm, and the characteristics were dependent on the pH of the sample. An association constant for the complex could be determined and was also found to be pH sensitive, with the association constant dropping to zero at values below pH 7.0 and above pH 8.5. The determination of the delta Absmax for the ethylbenzene-hemin complex at various hemin concentrations indicates monomeric heme to be the species responsible for binding the hydrocarbon with the concomitant generation of the reverse type I spectral change.

Alcohols↗
PubMed1984

Competition between hydrocarbon and barbiturate for spectral binding to hepatic cytochrome P-450. Inferences concerning spin state of the enzyme.

The substrates hexobarbital and ethylbenzene have been shown to compete for the spectral binding site of phenobarbital-induced rat hepatic microsomal cytochrome p-450. The two substrates produce different delta Absmax values, and the presence of one substrate does not affect the delta Absmax of the other substrate and vice versa. The respective binding constants for the two substrates are similarly unaffected. The conclusion drawn from these observations is that, over the concentration ranges studied, there is no change in the availability of the enzyme as a result of substrate addition; the difference in delta Absmax apparently being due to varying abilities of different substrates to bring about a spin shift in the enzyme. Evidence is presented to indicate that differences between enzymes from untreated male rats and phenobarbital-treated male rats are attributable to differences in the enzyme itself and not to changes in the nature of the membrane brought about by phenobarbital administration, at least insofar as heat entropy compensation is concerned. The enthalpy-entropy compensation observed in the binding of a homologous series of barbiturates to the microsomal membrane as determined from the membrane concentration dependence of their binding constants is shown to agree surprisingly well with the direct determination performed by Sitar and Mannering.

Animals↗
PubMed1981

The interaction of hepatic cytochrome P-450 with organic solvents. The effect of organic solvents on apparent spectral binding constants for hydrocarbon substrates.

Studies have been undertaken to explain the observed variation of the apparent association constant for water-insoluble substrates, which were diluted in common organic solvents, as a direct function of the solvent/solute ratio. By the use of suitable equations, the solvents methanol, ethanol, propanol, and acetone are shown to interact with hydrocarbon substrates in a competitive manner in PB-treated male rats, with the solvent producing a type I spectral component. Such solvents are shown to elicit, in addition to the type I component, a modified type II component. In untreated rats, ethanol does not produce a type I component, and also does not affect the apparent association constant for the hydrocarbon substrates when used as a solvent for those substrates. All perturbations of the enzyme which cause a change in the apparent association constant of the substrate also cause a quantitatively similar change in the apparent association of the solvent for the enzyme. A sex difference, with respect to competitive solvent binding, is also observed. Cytochrome P-450 from untreated male rats is apparently unable to bind small polar solvent substrates at the hydrocarbon binding site, whereas untreated female rats possess such an ability. In PB-treated rats, solvent binding is found to be sex-dependent. With respect to PB induction in female rats, the binding affinity for ethanol in the PB-treated animals is significantly larger than that observed in untreated females.

Animals↗