Biomedical subjects

W J Ray

Publications and source records attributed to W J Ray.

At least 37 records · Page 2Linked to original sources

PubMed1998

Molecular pathogenesis of sporadic and familial forms of Alzheimer's disease.

Our understanding of the pathogenesis of Alzheimer's disease (AD) comes primarily from the study of rare inherited forms of the disease. Mutations that cause familial AD appear to act by a common mechanism: that of increasing production of A beta 42/43, one of the family of A beta peptides deposited in senile plaques. However, increased A beta 42/43 production has not been demonstrated to occur in most cases of sporadic AD, suggesting that genetic and environmental factors acting at other stages of the disease process can modify the risk for disease. Such factors most likely include those affecting A beta aggregation or clearance, the inflammatory response, cerebrovascular disease, or susceptibility of neurons to injury. Identifying these factors will lead to a better understanding of the etiology of the disease and provide additional targets for therapeutic intervention.

Age of Onset↗

PubMed1998

Movement-related potentials accompanying unilateral finger movements with special reference to rate of force development.

The aim of this study was to examine the relationship between force and rate of force development with electroencephalogram correlates. The primary question was whether the different components of movement related potentials (MRPs) were related to specific properties of force output while subjects performed index finger force production tasks. The peak force and rate of force development (e.g., a product of peak force over time-to-peak force) were manipulated, and the effects of these manipulations on components of MRPs preceding and accompanying force production tasks were examined. The hypothesis was that the rate of force development, rather than level of force itself, would directly influence the later component of MRPs. Consistent with this hypothesis was the finding that the amplitudes of MRP components preceding (MP) and accompanying (MMP, MTP) finger force production movements were significantly correlated with force development rate.

Adult↗

PubMed1997

CYP26, a novel mammalian cytochrome P450, is induced by retinoic acid and defines a new family.

A novel member of the cytochrome P450 superfamily, CYP26, which represents a new family of cytochrome P450 enzymes, has been cloned. CYP26 mRNA is up-regulated during the retinoic acid (RA)-induced neural differentiation of mouse embryonic stem cells in vitro and is transiently expressed by embryonic stem cells undergoing predominantly non-neural differentiation. CYP26 transcript is detectable as early as embryonic day 8.5 in mouse embryos, suggesting a function for the gene in early development. CYP26 is expressed in mouse and human liver, as expected for a cytochrome P450, and is also expressed in regions of the brain and the placenta. Acute administration of 100 mg/kg all-trans-RA increases steady-state levels of transcript in the adult liver, but not in the brain. CYP26 is highly homologous to a Zebrafish gene, CYPRA1, which has been proposed to participate in the degradation of RA, but is minimally homologous to other mammalian cytochrome P450 proteins. Thus, we report the cloning of a member of a novel cytochrome P450 family that is expressed in mammalian embryos and in brain and is induced by RA in the liver.

Amino Acid Sequence↗

PubMed1997

EEG concomitants of hypnotic susceptibility.

Numerous historical attempts have been directed at understanding electrocortical concomitants of hypnosis. Today, with the availability of more sophisticated multichannel recording technologies and signal-processing approaches, it is possible to reconsider and update previous attempts. The most solid relationship between electrocortical activity and hypnotizability exists in the EEG theta frequency range. Given the stable electrocortical differences found in high and low susceptible individuals, the question arises whether we can use additional EEG measures to help understand the nature of these individual differences. One possible alternative is the pointwise or fractal dimension, which we examined during baseline conditions with high and low hypnotic susceptible individuals. The dimensionality measures suggest that high susceptible individuals display underlying brain patterns associated with imagery, whereas low susceptible individuals show patterns consistent with cognitive activity (i.e., mental math). This type of speculation is similar to that of Tellegen, who makes a distinction between imaginative versus realistic responding. Future research should address the exact nature of the underlying process (imagination, effortlessness, suggestibility, etc.) seen in high and low susceptible individuals.

Arousal↗

PubMed1996

Retinoic acid promotes neural and represses mesodermal gene expression in mouse embryonic stem cells in culture.

Mouse embryonic stem cells treated with retinoic acid are induced to differentiate into neuron-like cells (Bain et al. (1995) Dev. Biol. 168, 342-357). Here we have examined the expression of a set of neural- and mesoderm-specific genes during this in vitro differentiation process. mRNAs encoding the neural genes Wnt-1, MASH1, the light and medium isoforms of neurofilaments, and the neurotransmitter-synthesizing enzyme glutamic acid decarboxylase are all strongly upregulated by retinoic acid treatment; expression of these genes occurs in a temporal pattern resembling that in the developing brain. In contrast, retinoic acid blocks the expression of the mesodermal genes Brachyury, cardiac actin, and zeta-globin. Thus, retinoic acid exerts both pro-neuronal and anti-mesodermal activities on mouse embryonic stem cells in culture.

Animals↗

PubMed1996

Regulation of protein abundance in pluripotent cells undergoing commitment to the neural lineage.

The P19 cell line is a widely studied model of neural differentiation When pluripotent P19 cells are cultured as aggregates in the presence of retinoic acid for 4 days, the cells commit to the neural fate, but have not yet undergone overt differentiation. Two-dimensional polyacrylamide gel electrophoresis was used to analyze cellular protein expression during this induction. Approximately 500 abundant polypeptides were analyzed. Seventeen polypeptides were upregulated during induction; several of these were significantly regulated 48 h after the addition of retinoic acid. No downregulations were observed. Fifteen of the 17 polypeptides continued to be expressed throughout terminal differentiation. The upregulation of 14 of the 17 polypeptides requires both retinoic acid and aggregation, which alone do not induce neural differentiation. Furthermore, these regulated polypeptides are expressed in neural tissue, suggesting they are associated with neural function in vivo. Embryonic stem cells, a totipotent line, also neurally differentiate in response to retinoic acid and aggregation. Comparison of embryonic stem cells to P19 cells shows that the two systems regulate a similar set of polypeptides and are thus likely to utilize a similar pathway. These studies are a step toward determining the full extent of regulation involved in the commitment of pluripotent cells to the neural fate.

Cell Aggregation↗

PubMed1995

Reexamination of induced fit as a determinant of substrate specificity in enzymatic reactions.

It has been argued that a substrate-induced conformational change involving the orientation of catalytic groups cannot affect the specificity for two substrates in an enzymatic system where the chemical step is rate limiting, because such an induced fit would alter the catalytic efficiency for both to an equal extent. To the contrary, the generalized induced-fit treatment described here shows that when critical substrate-specific conformational changes in the enzyme persist in the transition state, specificity is linked to conformational differences between the reactive complex for a good substrate and the related complex for a poor one. Conformational differences are a determinant of specificity when the reaction proceeds via an "induced-fit" transition state. Our treatment also shows that such conformational changes can enhance the specificity of an enzyme with suboptimal catalytic efficiency. If substrate-dependent conformational differences in a primative enzyme can enhance specificity, evolutionary pressure to increase specificity could inseparably link enzymatic specificity to induced conformational changes.

Catalysis↗

PubMed1995

Cognitive influences on electrocortical and heart rate activity in obsessive-compulsive disorder.

The present study examined patterns of electrocortical and heart rate activity in obsessive-compulsive (OC) patients, and both high and low trait anxious control groups. Physiological patterns were examined in light of an intake-rejection attentional paradigm. For each group, electrocortical and cardiac activity were recorded during conditions of mental rest and mental activity requiring the internal versus external processing of information. The pattern of heart rate activity observed in the present study validated the choice of tasks used to examine intake and rejection attentional processes. Overall, the study reported three major findings. First, at baseline, both OC patients and high trait anxious subjects showed a pattern of activity in their EEG spectrum that differed significantly from low trait anxious subjects. Second, similar heart rate differences for the intake and rejection tasks were detected in all three groups. Third, EEG patterns unique to OCs were evidenced in the frontal region during intake and rejection tasks.

Adult↗

PubMed1995

EEG concomitants of hypnosis and hypnotic susceptibility.

Electroencephalograph (EEG) measures described high- and low-hypnotizable participants in terms of 3 conditions: an initial baseline period; baselines preceding and following a standard hypnotic induction; and during the induction. The following results were obtained. 1. High and low-hypnotic susceptible participants displayed a differential pattern of EEG activity during the baseline period, characterized by greater theta power in the more frontal areas of the cortex for the high-susceptible participants. 2. In the period preceding and following a standardized hypnotic induction, low-susceptible participant displayed an increase in theta activity, whereas high-susceptible participants displayed a decrease. 3. During the actual hypnotic induction itself, theta power significantly increased for both groups in the more posterior areas of the cortex, whereas alpha activity increased across all sites. Implications of these data include the possibility of psychophysiological measures offering a stable marker for hypnotizability, and anterior/posterior cortical differences being more important than hemispheric foci for understanding hypnotic processes.

Alpha Rhythm↗

PubMed1995

Standardized task strain and system response times in human-computer interaction.

Involuntary delays in human-computer interaction, for example, system response times (SRTs) can increase stress. In the present study, 40 college-age subjects were randomly divided into an 'incentive' and a 'non-incentive' group'. Subjects performed a computer task with SRTs of 0.5, 1.5, and 4.5s. Physiological, subjective, and performance data were collected during the task. The computer task was designed to individually set difficulty level (i.e., mental strain), thus standardizing the task for all subjects. By using this procedure, changes resulting from SRT duration can be separated from the effects related to task difficulty. The results indicate that both short and long SRTs produced differential psychophysiological changes consistent with different types of stress responses. Short SRTs resulted in higher autonomic and somatic activity, increased positive self-reported emotional states but poorer performance. Long SRTs resulted in increased electrodermal activity, negative self-reported emotional states and better performance.

Adult↗

PubMed1994

Capsid assembly in a family of animal viruses primes an autoproteolytic maturation that depends on a single aspartic acid residue.

Maturation of noninfectious nodavirus provirions occurs by autoproteolytic cleavage of most of the 180 copies of the alpha-protein that make up the icosahedral capsid. This maturation, which is much slower than viral assembly, produces an infectious particle that is more stable than the provirion and makes viral uncoating thermodynamically distinct from assembly, allowing assembly and (a time-delayed) uncoating to occur under similar conditions. The results of structural, computational, and molecular genetic studies suggest that maturation depends both on intrasubunit strain, produced during assembly, and on a critical aspartic acid residue. This residue lies in a hydrophobic pocket that is stabilized by intersubunit contacts. It is close to the scissile bond and exhibits an environmentally elevated pKa. The apparent involvement of a single acidic residue in the hydrolytic cleavage of a peptide bond contrasts with the involvement of 2 such residues in acid proteases.

Aspartic Acid↗

PubMed1994

From embryonal carcinoma cells to neurons: the P19 pathway.

The differentiation of mammalian neurons during development is a highly complex process involving regulation and coordination of gene expression at multiple steps. The P19 mouse embryonal carcinoma cell line is a suitable model system with which to analyze regulation of neuronal differentiation. These multipotential cells can be maintained and propagated in tissue culture in an undifferentiated state. Exposure of aggregated P19 cells to retinoic acid results in the differentiation of cells with many fundamental phenotypes of mammalian neurons. Undifferentiated P19 cells are amenable to genetic manipulations such as transfection and establishment of stable clonal cell lines expressing introduced genes. Proteins that play a key role in the neuronal differentiation of P19 cells are beginning to be identified. These include retinoic acid receptors, the epidermal growth factor receptor and the transcription factors Oct-3 and Brn-2. The biological and technical advantages of this system should facilitate deeper analysis of the activities of proteins that play a role in neuronal differentiation.

Animals↗

PubMed1994

Chaos and physiology: deterministic chaos in excitable cell assemblies.

In this review we examined the emerging science of deterministic chaos (nonlinear systems theory) and its application to selected physiological systems. Although many of the popular images of fractals represent fascination and beauty that by analogy corresponds to nature as we see it, the question remains as to its ultimate meaning for physiological processes. It was our intent to help clarify this somewhat popular, somewhat obscure area of nonlinear dynamics in the context of an ever-changing procedural base. We examined not only the basic concepts of chaos, but also its applications ranging from observations in single cells to the complexity of the EEG. We have not suggested that nonlinear dynamics will answer all of our questions; however, we did attempt to illustrate ways in which this approach may help us to answer new questions and to rearticulate old ones. Chaos is revolutionary in that the overall approach requires us to adopt a different frame of reference which, at times, may move us away from previous concerns and methods of data analysis. In sections I-IV, we summarized the nonlinear dynamics approach and described its application to physiology and neural systems. First, we presented a general overview of the application of nonlinear dynamical techniques to neural systems. We discussed the manner in which even apparently simple deterministic systems can behave in an unpredictable manner. Second, we described the principles of nonlinear dynamical systems including the derived analytical techniques. We now see a variety of procedures for delineating whether frenetic chaotic behavior results from a nonlinear dynamical system with a few degrees of freedom, or whether it is caused by an infinite number of variables, i.e., noise. Third, we approached the applications of nonlinear procedures to the cardiovascular systems and to the neurosciences. In terms of time series, we described initial studies which applied the now "traditional" measures of dimensionality (e.g., based on the algorithm by Grassberger and Procaccia) and information change (e.g., Lyapunov exponents). Examples include our own work and that of Pritchard et al., demonstrating that the dynamics of neural mass activity reflect psychopathological states. Today, however, the trend has expanded to include the use of surrogate data and statistical null hypotheses testing to examine whether a given time series can be considered different from that of white or colored noise (cf. Ref. 262). One of the most important potential applications is that of quantifying changes in nonlinear dynamics to predict future states of the system.(ABSTRACT TRUNCATED AT 400 WORDS)

Animals↗

PubMed1993

Expression of ionotropic glutamate receptor genes by P19 embryonal carcinoma cells.

P19 embryonal carcinoma cells can be induced to differentiate into neuron-like cells by retinoic acid. P19 neurons were recently shown to express both NMDA and non-NMDA type glutamate receptor-mediated currents and be susceptible to glutamate excitotoxicity. In this study, we used RT-PCR to survey differentiated P19 cultures for glutamate receptor transcript expression. The following transcripts were detected: at least one member of the GluR1-4 family, GluR5, GluR6, GluR7, KA1, KA2, NMDAR1, and NMDAR2B. Nuclease protection assays revealed a large quantitative induction of GluR6 transcripts following retinoic acid treatment. Inotropic glutamate receptors are a fundamental and major feature of CNS neurons which are not expressed by the cell lines commonly used as experimental models for mammalian neurons. The present results show that P19 cells express multiple genes involved in glutamate receptor biology. Since the stem cells can be manipulated genetically, the system has the basic requirements for analyzing mechanisms involved in glutamate receptor gene expression.

Animals↗

PubMed1993

Internal chemical bonding in solutions of simple phosphates and vanadates.

The chemical bonding within structurally related phosphates and vanadates in aqueous solution is compared on the basis of vibrational frequencies obtained by classical Raman spectroscopy. To do this, an empirical relationship between the stretching frequency of P-O and P-OH or P-OR groups and bond strength is developed such that the sum of the PO bond strengths, expressed in terms of average number of electron pairs per bond, is as close as possible to 5.0 for phosphoric acid and various anions and esters thereof. The same approach is used for the corresponding vanadates. The internal bonding in phosphates involves a greater bond strength for P-OH and a smaller strength for P-O than might be expected from a simple consideration of canonical resonance forms. In vanadates, V-OH and V-O are closer to single and double bonds, respectively, than in phosphates, and the force constant for V = O is considerably smaller than for P = O, although that for V-OH and P-OH is similar. Since treating the P-O and V-O groups of simple tetrahedral phosphates and vanadates as independent diatomic oscillators provides good correlations between the respective frequencies and bond strengths, the same correlations are used to approximate the expected stretching frequencies for distorted phosphates and vanadates. The distortions considered are those that presumably characterize associative and dissociative transition states for a concerted transfer of the (PO3-) fragment of a dianionic phosphate group between donor and acceptor oxygens with similar character.(ABSTRACT TRUNCATED AT 250 WORDS)

Magnetic Resonance Spectroscopy↗

PubMed1993

Comparison of vibrational frequencies of critical bonds in ground-state complexes and in a vanadate-based transition-state analog complex of muscle phosphoglucomutase. Mechanistic implications.

The symmetric stretching frequency of the P-O bonds of the enzymic phosphate group in muscle phosphoglucomutase was measured via 16O/18O Raman difference spectroscopy. This frequency, and its shift on isotopic substitution, is characteristic of a dianionic phosphate ester. The P-O stretching frequency is not detectably altered by the binding of the metal ion activators Mg2+, Zn2+, or Cd2+ nor by the subsequent binding of glucose phosphate. Hence, a binding-induced distortion/polarization of the enzymic phosphate group in the ground state, or enzyme-substrate complex, cannot serve as a rationale for the large value of kcat in the phosphoglucomutase reaction. By contrast, the stretching frequency of the V-O bonds within a vanadate group bound at the same site in the transition-state analog complex involving glucose 1-phosphate 6-vanadate is much lower than for a normal dianionic vanadate. This low V-O stretching frequency is best rationalized in terms of the extensive polarization of all three nonbridging oxygens of the vanadate ester dianion plus the formation of a weak, fifth bond to the vanadium atom. This distortion/polarization of the VO3(2-) group depends on the metal ion activator, since it is largely abolished, and the involvement of the fifth ligand eliminated, by substitution of Li+ for Mg2+ at the metal activation site.(ABSTRACT TRUNCATED AT 250 WORDS)

Animals↗

PubMed1993

Reaction of the isosteric methylenephosphonate analog of alpha-D-glucose 1-phosphate with phosphoglucomutase. Induced-fit specificity revisited.

The phospho form of phosphoglucomutase reacts with the isosteric methylenephosphonate analog of alpha-D-glucose 1-phosphate to produce the corresponding analog of alpha-D-glucose 1,6-bisphosphate plus the dephosphoenzyme. In a coupled reaction, kcat/Km = 1.7 x 10(3) M-1 s-1, which is about 2 x 10(-5) times that for the corresponding reaction with alpha-D-glucose 1-phosphate. The decrease in kcat/Km is divided more or less evenly between less efficient PO3- transfer and decreased binding, although smaller phosphates and phosphonates bind approximately equally. There is a much smaller difference in the binding of glucose 1-methylenephosphonate 6-phosphate and glucose 1,6-bisphosphate to the dephosphoenzyme: the binding ratio is < 1:35 when the glucose ring is oriented similarly. Preferred binding patterns for a number of substrates/inhibitors, studied by 31P NMR and UV-difference spectroscopy, suggest that in the ground state the phosphonate group is tolerated to a much greater extent at the catalytic subsite than at the phosphate-binding subsite, where binding specificity appears to be directed toward a tetrahedral-PO3(2-) group attached to a bridging atom that can act as a hydrogen-bond acceptor. Binding specificity at the catalytic subsite apparently is directed toward a different array, possibly (-O...PO3...O-)2-. Some of these results are considered in terms of a modified version of the "induced fit" concept of enzymic specificity, which is reexamined in view of implied thermodynamic restrictions. The internal rearrangement whereby the positions of the anionic groups of the phosphate/phosphonate are exchanged is compared with the analogous rearrangements involving glucose 1,6-bisphosphate and 1,4-butanediol bisphosphate. The supplementary material describes a three-step synthesis of 1-deoxy-alpha-D-glucose 1-methylenephosphonate together with a procedure for phosphorylating the phosphonate to produce an analog of alpha-D-glucose 1,6-bisphosphate and also describes a facile procedure for the qualitative conversion of organic phosphonates to inorganic phosphate.

Animals↗

PubMed1993

Structural changes at the metal ion binding site during the phosphoglucomutase reaction.

An electron density map of the reactive, Cd2+ form of crystalline phosphoglucomutase from X-ray diffraction studies shows that the enzymic phosphate donates a nonbridging oxygen to the ligand sphere of the bound metal ion, which appears to be tetracoordinate. 31P and 113Cd NMR spectroscopy are used to assess changes in the properties of bound Cd2+ produced by substrate/product and by substrate/product analog inhibitors. The approximately 50 ppm downfield shift of the 113Cd resonance on formation of the complex of dephosphoenzyme and glucose 1,6-bisphosphate is associated with the initial sugar-phosphate binding step and likely involves a change in the geometry of the coordinating ligands. This interpretation is supported by spectral studies involving various complexes of the active Co2+ and Ni(2+)-enzyme. In addition, there is a loss of the 31P-113Cd J coupling that characterizes the monophosphate complexes of the Cd2+ enzyme either during or immediately after the PO3- transfer step that produces the bisphosphate complex, indicating a further change at the metal binding site. The implications of these observations with respect to the PO3- transfer process in the phosphoglucomutase reaction are considered. The apparent plasticity of the ligand sphere of the active site metal ion in this system may allow a single metal ion to act as a chaperone for a nonbridging oxygen during PO3- transfer or to allow a change in metal ion coordination during catalysis. A general NMR line shape/chemical-exchange analysis for evaluating binding in protein-ligand systems when exchange is intermediate to fast on the NMR time scale is described. Its application to the present system involves multiple exchange sites that depend on a single binding rate, thereby adding further constraints to the analysis.

Binding Sites↗