Biomedical subjects
Publications and source records attributed to Werner Kaminsky.
The optical rotatory power of achiral crystals of achiral pentaerythritol molecules was measured. The maximum rotations were found to be +/-6 degrees /mm. The quantum mechanically computed rotation of pentaerythritol molecules using linear response theory was 6 times larger although the experimental and theoretical tensors were similarly oriented to within 5 degrees .
Superoxide reductases (SORs) are cysteine-ligated, non-heme iron enzymes that reduce toxic superoxide radicals (O2-). The functional role of the trans cysteinate, as well as the mechanism by which SOR reduces O2-, is unknown. Herein is described a rare example of a functional metalloenzyme analogue, which catalytically reduces superoxide in a proton-dependent mechanism, via a trans thiolate-ligated iron-peroxo intermediate, the first example of its type. Acetic-acid-promoted H2O2 release, followed by Cp2Co reduction, regenerates the active Fe(II) catalyst. The thiolate ligand and its trans positioning relative to the substrate are shown to contribute significantly to the catalyst's function, by lowering the redox potential, changing the spin state, and dramatically lowering the nuFe-O stretching frequency well-below that of any other reported iron-peroxo, while leaving nuO-O high, so as to favor superoxide reduction and Fe-O, as opposed to O-O, bond cleavage. Thus we provide critical insight into the relationship between the SOR structure and its function, as well as important benchmark parameters for characterizing highly unstable thiolate-ligated iron-peroxo intermediates.
Rhythmic precipitates of centrosymmetric phthalic acid were analyzed by a square-wave mechanically modulated circular extinction imaging microscope. Spherulites were bisected into square-millimeter sized heterochiral domains that are a consequence of circular intensity differential scattering of left and right circularly polarized light. The dissymmetry and chiral amplification indicated optically was confirmed in the microtexture established by atomic force and scanning electron microscopies.
Nitrile hydratase (NHase) is one of a growing number of enzymes shown to contain post-translationally modified cysteine sulfenic acids (Cys-SOH). Cysteine sulfenic acids have been shown to play diverse roles in cellular processes, including transcriptional regulation, signal transduction, and the regulation of oxygen metabolism and oxidative stress responses. The function of the cysteine sulfenic acid coordinated to the iron active site of NHase is unknown. Herein we report the first example of a sulfenate-ligated iron complex, [Fe(III)(ADIT)(ADIT-O)](+) (5), and compare its electronic and magnetic properties with those of structurally related complexes in which the sulfur oxidation state and protonation state have been systematically altered. Oxygen atom addition was found to decrease the unmodified thiolate Fe-S bond length and blue-shift the ligand-to-metal charge-transfer band (without loss of intensity). S K-edge X-ray absorption spectroscopy and density functional theory calculations show that, although the modified RS-O(-) fragment is incapable of forming a pi bond with the Fe(III) center, the unmodified thiolate compensates for this loss of pi bonding by increasing its covalent bond strength. The redox potential shifts only slightly (75 mV), and the magnetic properties are not affected (the S = (1)/(2) spin state is maintained). The coordinated sulfenate S-O bond is activated and fairly polarized (S(+)-O(-)). Addition of strong acids at low temperatures results in the reversible protonation of sulfenate-ligated 5. An X-ray structure demonstrates that Zn(2+) binds to the sulfenate oxygen to afford [Fe(III)(ADIT)(ADIT-O-ZnCl(3))] (6). The coordination of ZnCl(3)(-) to the RS-O(-) unit causes the covalent overlap with the unmodified thiolate to increase further. A possible catalytic role for the unmodified NHase thiolate, involving its ability to "tune" the electronics in response to protonation of the sulfenate (RS-O(-)) oxygen and/or substrate binding, is discussed.
A series of novel nonlinear optical (NLO) chromophores 1-4 incorporating the ferrocenyl (Fc) group as an electron donor and 2-dicyanomethylene-3-cyano-4-methyl-2,5-dihydrofuran (TCF) derivatives as electron acceptors are presented. The use of a constant Fc donor and varied acceptors and bridges makes it possible to systematically determine the contribution of the conjugated bridge and the acceptor strength to chromophore nonlinear optical activity. The X-ray crystal structures of all four chromophores allow for the systematic investigation of the structure-property relationship for this class of molecules. For example, the crystal structures reveal that both cyclopentadienyl groups in the ferrocenyl donor contribute to the electron donating ability. The first-order hyperpolarizabilities beta of these chromophores, measured by hyper-Rayleigh scattering (HRS) relative to p-nitroaniline are reported. These beta values are compared to those calculated by density functional theory (DFT). The excellent agreement between the theoretical and experimental beta values demonstrates that a linear relation exists between the hyperpolarizability and the bond length alternation. An electrooptic coefficient, r(33), of approximately 25 pm/V at 1300 nm, for compound 4, incorporated into a polymer matrix, is competitive with organic chromophores. Moreover, this r(33) is more than 30 times larger than the previously reported value for an organometallic chromophore in a poled polymer matrix. This work not only underscores the potential for Fc donor moieties, which have been underutilized, but also demonstrates that experimental characterization and theoretical simulations are now congruent, viable methods for assessing potential performance of NLO materials.
The reactivity between a thiolate-ligated five-coordinate complex [FeII(SMe2N4(tren))]+ (1) and dioxygen is examined in order to determine if O2 activation, resembling that of the metalloenzyme cytochrome P450, can be promoted even when O2 binds cis, as opposed to trans, to a thiolate. Previous work in our group showed that [FeII(SMe2N4(tren))]+ (1) reacts readily with superoxide (O2-) in the presence of a proton source to afford H2O2 via an Fe(III)-OOH intermediate, thus providing a biomimetic model for the metalloenzyme superoxide reductase (SOR). Addition of O2 to 1 affords binuclear mu-oxo-bridged [FeIII(SMe2N4(tren))]2(mu2-O)(PF6)2.3MeCN (3). At low temperatures, in protic solvents, an intermediate is detected, the details of which will be the subject of a separate paper. Although the thiolate ligand does not appear to perturb the metrical parameters of the unsupported mu-oxo bridge (Fe-O= 1.807(8) A, and Fe-O-Fe= 155.3(5) degrees fall in the usual range), it decreases the magnetic coupling between the irons (J=-28 cm(-1)) and creates a rather basic oxo site. Protonation of this oxo using strong (HBF4, HCl) or weak (HOAc, NH4PF6, LutNHCl) acids results in bridge cleavage to cleanly afford the corresponding monomeric anion-ligated (OAc- (6), or Cl- (7)) or solvent-ligated (MeCN (4)) derivatives. Addition of OH- converts [FeIII(SMe2N4(tren))(MeCN2+ (4) back to mu-oxo 3. Thus, mu-oxo bridge cleavage is reversible. The protonated mu-hydroxo-bridged intermediate is not observed. In an attempt to prevent mu-oxo dimer formation, and facilitate the observation of O2-bound intermediates, a bulkier tertiary amine ligand, tren-Et4= N-(2-amino-ethyl)-N-(2-diethylamino-ethyl)-N',N'-diethyl-ethane-1,2-diamine, and the corresponding [FeII(SMe2N4(tren-Et4))]+ (5) complex was synthesized and structurally characterized. Steric repulsive interactions create unusually long FeII-N(3,4) amine bonds in 5 (mean distance=2.219(1) A). The [(tren-Et4)N4SMe2]1- ligand is unable to accommodate iron in the +3 oxidation state, and consequently, in contrast to most thiolate-ligated Fe(II) complexes, [FeII(SMe2N4(tren-Et4))]+ (5) does not readily react with O2. Oxidation of 5 is irreversible, and the potential (Epa=+410 mV (vs SCE)) is anodically shifted relative to 1 (E1/2=-100 mV (vs SCE)).
The title compound, K(+).[(C(8)H(5)O(4))(2)H](-).2H(2)O or K(+).C(16)H(11)O(8)(-).2H(2)O, was prepared by slow evaporation of an aqueous solution of potassium hydrogen phthalate. The molecular complex consists of a potassium cation coordinated to a proton-bound hydrogen phthalate dimer and two water molecules. The potassium cation resides on a twofold axis in a distorted square-antiprism coordination geometry. The compound is isomorphous with the ammonium analogue, previously misidentified. As potassium hydrogen phthalate is frequently used in the manufacture of buffers, organic carbon standards, acidimetric standards and various other products, the crystallization of a compound with a different stoichiometery from a solution containing the acidimetric standard has important practical implications.
Classical crystal optics has recently undergone a renaissance as developments in optical microscopy and polarimetry, enabled in part by sensitive imaging CCD cameras and personal computers, now permit the analytical separation of various optical effects that are otherwise convolved in polarized light micrographs. In this tutorial review, we review recent developments in the measurement of the principal crystallo-optical quantities including linear birefringence, linear dichroism, circular birefringence, and circular dichroism, as well as new effects in crystal optics encountered in unusual mixed crystals. The new microscopies and polarimetries are applied to problems of crystallographic twinning, phase transformations, stress birefringence, symmetry reduction, and the design of new crystalline materials.
Addition of amine nucleophiles to acetonitrile solutions of the OsIV anilido complex TpOs(NHPh)Cl2 (1) [Tp = hydrotris(1-pyrazolyl)borate] gives products with derivatized anilido ligands, i.e., TpOs[NH-p-C6H4(N(CH2)5)]Cl2 (2) from piperidine and TpOs[NH-p-C6H4N(CH2)4]Cl2 (3) from pyrrolidine. These materials are formed in approximately 30% yield under anaerobic conditions, together with approximately 60% yields of the OsIII aniline complex TpOs(NH2Ph)Cl2 (5). Formation of the para-substituted materials 2 or 3 from 1 involves oxidative removal of two hydrogen atoms (two H+ and two e-). The oxidation can be accomplished by 1, forming 5, or by O2. Related reactions have been observed with other amines and with the 2-naphthylamido derivative, which gives an ortho-substituted product. Kinetic studies indicate an addition-elimination mechanism involving initial attack of the amine nucleophile on the anilido ligand. These are unusual examples of nucleophilic aromatic substitution of hydrogen. Ab initio calculations on 1 show that the LUMO has significant density at the ortho and para positions of the anilido ligand, resembling the LUMO of nitrobenzene. By analogy with nucleophilic aromatic substitution, 2 is quantitatively formed from piperidine and the p-chloroanilide TpOs(NH-p-C6H4Cl)Cl2 (7). Binding the anilide ligands to an oxidizing OsIV center thus causes a remarkable umpolung or inversion of chemical character from a typically electron-rich anilido to an electron-deficient aromatic functionality. This occurs because of the coupling of redox changes at the TpOsIV center with bond formation at the coordinated ligand.
We present measurements of the dispersion of anomalous azimuthal rotation signals from dyed crystals that are at variance with our predictions based on a model of these effects predicated on the predominance of Rayleigh scattering from isolated dye molecules (Kaminsky et al. J Phys Chem A 107:2800-2807, 2003). Here, we extend our scattering model to include the effects of the absorption and refraction of individual dyes that are inclined in a biased manner with respect to the eigenmodes of the medium. Our revised model describes the wavelength dependence of the rotations. It is likely that absorption, refraction, and Rayleigh scattering are all manifest, with absorption and refraction being the leading effects.
New five-coordinate Pt(IV) complexes [{(o-R2-p-R'-C6H2)NC(R' ')}2CH]PtMe3 (R, R', R' ' = alkyl or H) are reported. The complex with R = Me, R' = tBu, R' ' = Me generates unsaturated Pt(II) species capable of alkane C-H bond activation and stoichiometric dehydrogenation.
A microscope was constructed for imaging circular dichroism of heterogeneous anisotropic media. To avoid linear biases that are common with electronic circular polarization modulation, we chose a retrogressive solution: mechanical light modulation by rotating a linear polarizer with respect to a quarter wave plate continuously tuned by tilting to the operating wavelength. Our comparatively slow technique succeeds with near-perfect circular input and signal averaging using a CCD camera. We have applied the method to anomalously birefringent crystals of 1,8-dihydroxyanthraquinone that are shown to have intergrown mirror image domains, undetected by X-ray diffraction because the twinning complexity renders differences in anomalous dispersion, already small, unreliable. The origin of the anomalous birefringence and the assignment of the absolute configuration are discussed.
The synthesis, properties, and electroluminescent device applications of a series of five new diphenylanthrazoline molecules 1a-1e are reported. Compounds 1b, 1c, and 1d crystallized in the monoclinic system with the space groups P2(1)/c, C2/c, and P2(1)/c, respectively, revealing highly planar molecules. Diphenylanthrazolines 1a-1e have a formal reduction potential in the range -1.39 to -1.58 V (versus SCE) and estimated electron affinities (LUMO levels) of 2.90-3.10 eV. Compounds 1a-1e emit blue light with fluorescence quantum yields of 58-76% in dilute solution, whereas they emit yellow-green light as thin films. The diphenylanthrazoline molecules as the emissive layers in light-emitting diodes gave yellow light with a maximum brightness of 133 cd/m(2) and an external quantum efficiency of up to 0.07% in ambient air. Bilayer light-emitting diodes using compounds 1a-1e as the electron-transport layer and poly(2-methoxy-5-(2'-ethyl-hexyloxy)-1,4-phenylene vinylene) as the emissive layer had a maximum external efficiency of 3.1% and 2.0 lm/W and a brightness of up to 965 cd/m(2) in ambient air. These results represent enhancements of up to 50 times in external quantum efficiency and 17 times in brightness when using 1a-1e as the electron-transport materials in polymer light-emitting diodes. These results demonstrate that the new diphenylanthrazolines are promising n-type semiconductors for organic electronics.
A trimeric compound containing Co(II) is described, namely tris[mu-2-[3-(dimethylamino)propylimino]propane-1-thiolato]tricobalt(II) chloride bis(hexafluorophosphate), [Co(3)(C(10)H(21)N(2)S)(3)]Cl(PF(6))(2). Each Co atom is ligated by one 2-[3-(dimethylamino)propylimino]propane-1-thiolate ligand, an amine group and an imine group. The thiolate groups bridge the Co atoms, forming a six-membered ring that encloses the chloride ion in a well defined binding pocket.
The osmium(VI) nitrido complex TpOs(N)Cl(2) [1, Tp = hydrotris(1-pyrazolyl)borate] reacts with triarylphosphines to afford the Os(IV) phosphiniminato complexes TpOs(NPAr(3))Cl(2) [Ar = p-tolyl (tol) (2a), phenyl (2b), p-CF(3)C(6)H(4) (2c)] in nearly quantitative yield. Protonation of 2a-c with 1 equiv of HOTf in MeCN occurs at the phosphiniminato nitrogen to give [TpOs(IV)(NHPAr(3))Cl(2)]OTf (3a-c) in 68-80% yield. Solutions of 2a-c in CH(2)Cl(2) react with excess H(2)O over 1 week to form the disproportionation products 1 (28%), TpOs(III)(NHPAr(3))Cl(2) (4a-c) (60%), and OPAr(3) (35%). Treatment of solutions of 3a-c with H(2)O also affords 1, 4a-c, and OPAr(3). X-ray structures of 2b, 3b, and 4b are presented. Cyclic voltammograms of compounds 2a-c exhibit Os(V)/Os(IV) and Os(IV)/Os(III) couples at approximately 0.3 and -1 V versus Cp(2)Fe(+/0). Protonation to give 3 makes reduction easier by approximately 1.2 V, so that these compounds show Os(IV)/Os(III) and Os(III)/Os(II) couples. In the hydrolytic disproportionation of 2a-c, labeling studies using (18)O-enriched O(2) and H(2)O establish water as the source of the oxygen atom in the OPAr(3) product. The conversions are accelerated by HOTf and inhibited by NaOD. The relative rates of hydrolytic disproportionation of 2a-c vary in the order tol > Ph > p-CF(3)C(6)H(4). The data indicate that protonation of the phosphiniminato nitrogen is required for hydrolysis. The mechanism of the hydrolytic disproportionation is compared to that of the related reaction of the osmium(IV) acetonitrile complex [TpOs(NCMe)Cl(2)](+).
Superoxide reductases (SORs) are nonheme iron-containing enzymes that reduce HO(2) to H(2)O(2). Exogenous substrates such as N(3)(-) and CN(-) have been shown to bind to the catalytic iron site of SOR, and cyanide acts as an inhibitor. To understand how these exogenous ligands alter the physical and reactivity properties of the SOR iron site, acetate-, azide-, and cyanide-ligated synthetic models of SOR have been prepared. The x-ray crystal structures of azide-ligated [Fe(III)(S(Me2)N(4)(tren))(N(3))](+) (3), dimeric cyanide-bridged ([Fe(III)(S(Me2)N(4)(tren))](2)-mu-CN)(3+) (5), and acetate-ligated [Fe(III)(S(Me2)N(4)(tren))(OAc)](+) (6) are described, in addition to x-ray absorption spectrum-derived and preliminary crystallographic structures of cyanide-ligated [Fe(III)(S(Me2)N(4)(tren))(CN)](+) (4). Cyanide coordination to our model (4) causes the redox potential to shift anodically by 470 mV relative to acetate-ligated 6 and 395 mV relative to azide-ligated 3. If cyanide coordination were to cause a similar shift in redox potential with SOR, then the reduction potential of the catalytically active Fe(3+) center would fall well below that of its biological reductants. These results suggest therefore that cyanide inhibits SOR activity by making the Fe(2+) state inaccessible and thus preventing the enzyme from turning over. Cyanide inhibits activity in the metalloenzyme superoxide dismutase via a similar mechanism. The reduced five-coordinate precursor to 3, 4, and 6 [Fe(II)(S(Me2)N(4)(tren))](+) (1) was previously shown by us to react with superoxide to afford H(2)O(2) via an [Fe(III)(S(Me2)N(4)(tren))(OOH)](+) intermediate. Cyanide and azide do not bind to 1 and do not prevent 1 from reducing superoxide.
TpOs(N)(OAc)2 (2) is formed upon reaction of TpOs(N)Cl2 (1) with excess silver acetate (Tp = hydrotrispyrazolylborate). Treatment of 2 with protic acids HX gives the osmium(VI) complexes TpOs(N)X2, where X = trifluoroacetate (TFA, 3), trichloroacetate (TCA, 4), tribromoacetate (TBA, 5), bromide (6), oxalate (X2 = O2C2O2, 7), or nitrate (ONO2, 8). Cyclic voltammetry studies of 1-8 show irreversible reductions of OsVI to OsV, varying over a range of 0.63 V. Much smaller relative variations are observed in 15N NMR chemical shifts, v(Os identical to N) stretching frequencies, and optical absorbances. Compounds 1-8 all react with PPh3 by nucleophilic attack at the nitride ligand, yielding TpOs(NPPh3)X2. The reactions are accelerated by more electron withdrawing ligands X. The relative rates correlate with the peak reduction potentials although the effect is small: the rates vary by only 10(2) while the 0.63 V change in Ep,c corresponds to a change in equilibrium constant for electron transfer of approximately 10(11). Compounds 1-8 also react with triphenylboron, BPh3, with formation of borylanilido complexes TpOs[N(Ph)BPh2]X2. However, rate constants for reactions with BPh3 to yield OsIV boryl-amido complexes do not in general correlate with one-electron-reduction potentials. This is likely due to the mechanism of the BPh3 reactions being a two-step process and not simply nucleophilic attack.
Cp2TiCl2 reacts with NaOOtBu to form the new titanium peroxide complex, Cp2Ti(OOtBu)Cl (1), which has been characterized both in solution and in the solid state. This complex is surprisingly unreactive towards olefins and phosphines, as it does not directly transfer an oxygen atom. Instead, decomposition occurs via initial homolysis of the oxygen-oxygen bond, yielding a tert-butoxyl radical. Decomposition of 1 in the presence of phosphines yields either phosphine oxides (e.g., OPPh3) or phosphinites (e.g., tBuOPEt2), products that result from tBuO* + PR3. O-O bond homolysis is surprising because the Ti(IV) center is d0 and cannot be oxidized, where all previous clear examples of homolytic cleavage of metal peroxide complexes are facilitated by oxidation of the metal center.