Biomedical subjects

William K Vencill

Publications and source records attributed to William K Vencill.

4 recordsLinked to original sources

PubMed2006

Functional classification, genomic organization, putatively cis-acting regulatory elements, and relationship to quantitative trait loci, of sorghum genes with rhizome-enriched expression.

Rhizomes are organs of fundamental importance to plant competitiveness and invasiveness. We have identified genes expressed at substantially higher levels in rhizomes than other plant parts, and explored their functional categorization, genomic organization, regulatory motifs, and association with quantitative trait loci (QTLs) conferring rhizomatousness. The finding that genes with rhizome-enriched expression are distributed across a wide range of functional categories suggests some degree of specialization of individual members of many gene families in rhizomatous plants. A disproportionate share of genes with rhizome-enriched expression was implicated in secondary and hormone metabolism, and abiotic stimuli and development. A high frequency of unknown-function genes reflects our still limited knowledge of this plant organ. A putative oligosaccharyl transferase showed the highest degree of rhizome-specific expression, with several transcriptional or regulatory protein complex factors also showing high (but lesser) degrees of specificity. Inferred by the upstream sequences of their putative rice (Oryza sativa) homologs, sorghum (Sorghum bicolor) genes that were relatively highly expressed in rhizome tip tissues were enriched for cis-element motifs, including the pyrimidine box, TATCCA box, and CAREs box, implicating the gibberellins in regulation of many rhizome-specific genes. From cDNA clones showing rhizome-enriched expression, expressed sequence tags forming 455 contigs were plotted on the rice genome and aligned to QTL likelihood intervals for ratooning and rhizomatous traits in rice and sorghum. Highly expressed rhizome genes were somewhat enriched in QTL likelihood intervals for rhizomatousness or ratooning, with specific candidates including some of the most rhizome-specific genes. Some rhizomatousness and ratooning QTLs were shown to be potentially related to one another as a result of ancient duplication, suggesting long-term functional conservation of the underlying genes. Insight into genes and pathways that influence rhizome growth set the stage for genetic and/or exogenous manipulation of rhizomatousness, and for further dissection of the molecular evolution of rhizomatousness.

Chromosome Mapping↗

PubMed2005

Sorption and desorption of flumioxazin to soil, clay minerals and ion-exchange resin.

Flumioxazin adsorption kinetics were described using a Greenville sandy clay loam soil. Adsorption kinetics experiments showed that 72% of total herbicide was absorbed after 1 h of continuous shaking and continued to increase to 78% after 72 h. Flumioxazin adsorption was then tested on seven agriculturally important soils throughout the southern USA. Adsorption isotherms for all soils had K(f) (Freundlich distribution coefficient) values that ranged from 8.8 to 0.4, with many near 1.5. Soil organic matter content was the parameter most highly correlated with flumioxazin adsorption (r(2) = 0.95, P < 0.001). Sorption to clay minerals had K(f) values ranging from 50 for bentonite to 4.7 for kaolinite. However, normalizing K(f) for sorbent surface area revealed that aluminum hydroxide (gibbsite) possessed the greatest flumioxazin sorption per unit area. Sorption to anionic exchange resin (K(f) 676) was greater than cationic exchange resin (K(f) 42). Molecular model calculations were performed to elucidate why sorption was greater to anionic exchangers. These calculations indicated that a region of dense electronegativity exists on the 3-dione moiety of the molecule. This would lead to greater flumioxazin sorption by positively charged surface sites. Desorption isotherms from soil exhibited no effect of hysteresis. Desorption from clay minerals was very rapid and flumioxazin in solution was undetectable after three desorption steps. From these data it was concluded that flumioxazin can become readily available in soil solution with increase in soil water content.

Adsorption↗

PubMed2003

Flumioxazin soil persistence and mineralization in laboratory experiments.

Flumioxazin is an herbicide registered for use in soybean and peanut. However, few published papers concerning the soil persistence of flumioxazin are available. Therefore, laboratory studies were initiated to determine the half-life (t(1/2)) of flumioxazin in Greenville sandy clay loam and Tifton loamy sand soils when incubated at 15 and 25 degrees C. Results indicated that temperature had little effect on flumioxazin persistence. The t(1/2) for the Greenville soil was 17.9 and 16.0 days while the Tifton soil was 13.6 and 12.9 days, at 15 and 25 degrees C, respectively. These data correspond to the greater clay content of the Greenville soil (32%) as compared to the Tifton soil (2%). Therefore, the Greenville soil had greater soil adsorption and less flumioxazin was generally available to be degraded by soil microorganisms. In soils that were heat treated to reduce microbe populations, 99% of initial flumioxazin was accounted for after 16 days. Mineralization of flumioxazin, measured as 14CO2 evolution, was also greater in the Tifton soil (2.2% after 64 days) than in the Greenville soil (2.0% after 64 days). From these data, it was concluded that microbes were the most influential factor concerning the degradation of flumioxazin.

Benzoxazines↗

PubMedDate not supplied

Gas chromatographic/mass spectrometric determination of flumioxazin extracted from soil and water.

A method was developed for determining flumioxazin in soil and water. Recovery efficiencies for solid-phase extraction (SPE) of flumioxazin from deionized, well, and surface water were between 72 and 77%. SPE was superior to liquid-liquid extraction, using water-hexane and water-chloroform emulsions, which resulted in retrieval efficiencies of 25 and 22%, respectively. However, liquid-liquid extraction with ethyl acetate improved recovery of total flumioxazin to >64%. Extraction from soil samples by direct solvent/soil extraction methods recovered between 18 and 76% of applied flumioxazin, depending on the solvent combination used. However, the use of accelerated solvent extraction techniques resulted in a 106 +/- 8% recovery of flumioxazin from soil. In analysis by capillary gas chromatography with mass selective detection, flumioxazin had a calculated limit of detection of 9 ng/mL with a retention time of 16.66 min.

Acetonitriles↗