A global search of highly stable gold-covered bimetallic clusters M@Au(n) (n=8-17): endohedral gold clusters.
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Biomedical subjects
Publications and source records attributed to Xiao Cheng Zeng.
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We employed a four-step searching/screening approach to determine best candidates for the global minima of (H2O)11 and (H2O)13. This approach can be useful when there exist a large number of low-lying and near-isoenergetic isomers, many of which have the same oxygen-skeleton structure. On the two new candidates for the global minimum of (H2O)11, one isomer can be viewed as placing the 11th molecule onto the side of the global minimum of (H2O)10 and the other can be viewed as removing the 12th molecule from the middle layer of the global minimum of (H2O)12. The three leading lowest-energy clusters of (H2O)13 can all be built starting from the global minimum of (H2O)12, with the difference being in the location of the 13th water molecule.
We have investigated properties of chemically modified boron nitride nanotubes (BNNTs) with NH(3) and four other amino functional groups (NH(2)CH(3), NH(2)CH(2)OCH(3), NH(2)CH(2)COOH, and NH(2)COOH) on the basis of density functional theory calculations. Unlike the case of carbon nanotubes, we found that NH(3) can be chemically adsorbed on top of the boron atom, with a charge transfer from NH(3) to the BNNT. The minimum-energy path calculation shows that a small energy barrier is encountered during the adsorption. Similarly, a small energy barrier (about 0.42 eV) is also involved in the desorption, suggesting that both adsorption and desorption can be realized even at room temperature. For chemically modified BNNTs with various amino functional groups, the adsorption energies are typically less than that of NH(3) on the BNNT. The trend of adsorption-energy change can be correlated with the trend of relative electron-withdrawing or -donating capability of the amino functional groups. Overall, the chemical modification of BNNTs with the amino groups results in little changes in the electronic properties of BNNTs. However, the chemical reactivity of the BNNTs can be enhanced by the chemical modification with the amino group containing -COOH.
Alkoxy side-chain-flanked diarylsulfonamide serves as a reliable structural motif for constructing macrocyclic aromatic tetrasulfonamides. This 90 degrees structural motif is persistent both in solution and in the solid state, which allows the one-step formation of tetrasulfonamide macrocycles. These macrocycles adopt a cone-shaped conformation in solution and in the solid state. For each molecule, an interior cavity surrounded by the aromatic residues is formed. The cavity sizes of the macrocycles can be tuned by incorporating aromatic residues of proper sizes. Guest (solvent) molecules are found in the cavities and bound by side chains. In solution, 1H NMR shows that the cone conformations undergo rapid interconversion at room temperature. The alkoxy side chains are found to be indispensable for maintaining the cone conformation. In addition, these porous molecules self-assemble into hollow tubular structures in the solid state. A variety of host molecules and building blocks for constructing nanoporous solid-state structures can be expected from these molecules.
By combining the semiempirical density-functional based tight-binding optimization with density-functional theory single-point energy calculation at the PBE1PBE/6-311G level, we propose an efficient computational approach to determine lowest-energy structures of large-sized carbon fullerenes. Our studies show that C(92) (D(3): 28) and C(94) (C(2): 43) are the new leading candidates for the lowest-energy structures of C(92) and C(94). Moreover, for the first time, the lowest-energy structures of C(98)-C(110) are identified on the basis of the density-functional theory calculation. The lowest-energy isomers C(102) (C(1): 603) and C(108) (D(2): 1771) are readily isolated experimentally because they are much lower in energy than their other low-lying IPR isomers.
The fullerenes are the first "free-standing" elemental hollow cages identified by spectroscopy experiments and synthesized in the bulk. Here, we report experimental and theoretical evidence of hollow cages consisting of pure metal atoms, Au(n)(-) (n = 16-18); to our knowledge, free-standing metal hollow cages have not been previously detected in the laboratory. These hollow golden cages ("bucky gold") have an average diameter >5.5 A, which can easily accommodate one guest atom inside.
Aromatic oligoureas are forced into well-defined conformation by incorporated intramolecular hydrogen bonds. Shape-persistent tetraureas macrocycles were obtained in a one-step [2+2] reaction in good yields.
Results of a combined photoelectron spectroscopy and first-principles density-functional study of SiN- clusters in the size range 20 or= 20. For 28 <or= N <or= 45, almost all low-lying near-spherical clusters SiN- adopt "stuffed-cage"-like structures where the cages are homologous to carbon fullerenes in the sense that they are composed of only five- and six-membered rings. However the arrangement of the "stuffing" atoms is not yet diamondlike.
We report a series of isoelectronic gold-caged metal clusters, M@Au14 (M = Zr, Hf), and anion clusters, M@Au14- (M = Sc, Y), all having a calculated HOMO-LUMO gap larger than the well-known tetrahedral cluster Au20-the 3D metal cluster with a very large measured HOMO-LUMO gap (1.77 eV). The clusters M@Au14 (M = Sc, Y) also exhibit a calculated electron affinity (EA) and vertical detachment energy (VDE) not only higher than the "superhalogen" icosahedral Al13 cluster but also possibly even higher than a Cl atom which has the highest (measured) elemental EA or VDE (3.61 eV).
By means of a large-scale molecular dynamics simulation, we show that the Tolman length, although positive, is much smaller in magnitude than previously reported. We found that the range of interparticle interaction can significantly affect the magnitude of the Tolman length. When the range of interaction is longer than five molecular diameters, the Tolman length is on the order of a few hundredths of the molecular diameter, rather than a few tenths known previously.
We present a new icosahedral gold fullerene, Au42, based on density functional theory calculations. The Au42 fullerene has a nanoscale hollow space that can hold up to 13 Au atoms. The Au42 fullerene also has a larger HOMO-LUMO gap compared to the compact-filling geometries. However, unlike the known gold fullerene Au32, the Au42 fullerene does not satisfy the 2(N + 1)2 aromatic rule and has a positive NICS value at the center of the cage. These two nanometer-sized gold fullerenes can be used as golden cages to accommodate other atoms or molecules for the purpose of studying fundamental chemistry because of their apparently dissimilar chemical characteristics, or they can be used as structural motifs to build highly stable core-shell nanoclusters or novel cluster-assembled materials.
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Experimental and computational simulations revealed that boron clusters, which favor planar (2D) structures up to 18 atoms, prefer 3D structures beginning at 20 atoms. Using global optimization methods, we found that the B20 neutral cluster has a double-ring tubular structure with a diameter of 5.2 A. For the B(-)20 anion, the tubular structure is shown to be isoenergetic to 2D structures, which were observed and confirmed by photoelectron spectroscopy. The 2D-to-3D structural transition observed at B20, reminiscent of the ring-to-fullerene transition at C20 in carbon clusters, suggests it may be considered as the embryo of the thinnest single-walled boron nanotubes.
We have performed an unbiased search for the lowest-energy geometric structures of medium-sized silicon clusters SiN (27 < or = N < or = 39) using a genetic algorithm and nonorthogonal-tight-binding method, followed by a refining and biased search using basin-hopping method coupled with density-functional theory. We show that the carbon fullerene cages are most likely generic cage motifs ("magic cages") to form low-lying stuffed-cage silicon clusters (beyond the size N > 27). An empirical rule that provides optimal "stuffing/cage" combinations for constructing low-energy endohedral silicon fullerenes is suggested, with a hope that it can provide guidance to future synthesis of "bucky" silicon.
Oligo(m-phenylene ethynylenes) (oligo(m-PE)) with backbones rigidified by intramolecular hydrogen bonds were found to fold into well-defined conformations. The localized intramolecular hydrogen bond involves a donor and an acceptor from two adjacent benzene rings, respectively, which enforces globally folded conformations on these oligomers. Oligomers with two to seven residues have been synthesized and characterized. The persistence of the intramolecular hydrogen bonds and the corresponding curved conformations were established by ab initio and molecular mechanics calculations, 1D and 2D (1)H NMR spectroscopy, and UV spectroscopy. Pentamer 5, hexamer 6, and heptamer 7 adopt well-defined helical conformations. Such a backbone-based conformational programming should lead to molecules whose conformations are resilient toward structural variation of the side groups. These m-PE oligomers have provided a new approach for achieving folded unnatural oligomers under conditions that are otherwise unfavorable for previously described, solvent-driven folding of m-PE foldamers. Stably folded structures based on the design principle described here can be developed and may find important applications.
Possible lowest-energy structures of Si21 and Si25 are found on the basis of the starting structures obtained via the global search for nearly identical low-energy Stillinger-Weber (SW) and modified-SW structures. The fact that the lowest-energy structures are spherical-like may suggest that the prolate-to-spherical-like structural transition for the silicon cluster Sin is likely to occur in the range of 21 < n < 25.
Backbone-rigidified oligo(m-phenylene ethynylenes) fold into crescent or helical conformations in non-polar organic solvents.
A general strategy for creating nanocavities with tunable sizes based on the folding of unnatural oligomers is presented. The backbones of these oligomers are rigidified by localized, three-center intramolecular hydrogen bonds, which lead to well-defined hollow helical conformations. Changing the curvature of the oligomer backbone leads to the adjustment of the interior cavity size. Helices with interior cavities of 10 A to >30 A across, the largest thus far formed by the folding of unnatural foldamers, are generated. Cavities of these sizes are usually seen at the tertiary and quaternary structural levels of proteins. The ability to tune molecular dimensions without altering the underlying topology is seen in few natural and unnatural foldamer systems.