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Biomedical subjects

Xiaoping Hu

Publications and source records attributed to Xiaoping Hu.

At least 19 recordsLinked to original sources

A First-in-Class Chemical-Induced Proximity System Achieves Dose-Dependent Control of Tumor Protein P53 Gene Activation in Preclinical Models of Gastric Cancer.

The tumor protein P53 (TP53) gene has long been studied in cancer research with genomic and epigenetic aberrations playing a driving role in cancer pathology, yet even after decades of work, only a few methods have been developed to specifically target TP53 therapeutically. Some cancers are driven by loss-of-function TP53 mutations, while others have wild-type TP53 in a transcriptionally repressed state; the latter is exploitable by advances in epigenome editing. In our previous work, we demonstrated that deactivated CRISPR/Cas9 systems (dCas9), combined with an FK-506-binding protein (FKBP) recruitment protein tag and chemical epigenetic modifier (CEM) small molecules, can elicit gene-specific changes in expression in a dose-dependent manner. Here, we describe the development, application, and characterization of the dCas9-FKBP-CEM technology to increase TP53 expression. We demonstrate that catalyzing increased TP53 expression via dCas9-FKBP-CEM87 induced apoptosis, cell cycle arrest, and tumor growth inhibition in a dose-dependent manner in preclinical models of gastric cancer.

CRISPR↗

Quantitative basal CBF and CBF fMRI of rhesus monkeys using three-coil continuous arterial spin labeling.

A three-coil continuous arterial-spin-labeling technique with a separate neck labeling coil was implemented on a Siemens 3T Trio for quantitative cerebral blood flow (CBF) and CBF fMRI measurements in non-human primates (rhesus monkeys). The optimal labeling power was 2 W, labeling efficiency was 92+/-2%, and optimal post-labeling delay was 0.8 s. Gray matter (GM) and white matter (WM) were segmented based on T1 maps. Quantitative CBF were obtained in 3 min with 1.5-mm isotropic resolution. Whole-brain average DeltaS/S was 1.0-1.5%. GM CBF was 104+/-3 ml/100 g/min (n = 6, SD) and WM CBF was 45+/-6 ml/100 g/min in isoflurane-anesthetized rhesus monkeys, with the CBF GM/WM ratio of 2.3+/-0.2. Combined CBF and BOLD (blood-oxygenation-level-dependent) fMRI associated with hypercapnia and hyperoxia were made with 8-s temporal resolution. CBF fMRI responses to 5% CO2 were 59+/-10% (GM) and 37+/-4% (WM); BOLD fMRI responses were 2.0+/-0.4% (GM) and 1.2+/-0.4% (WM). CBF fMRI responses to 100% O2 were -9.4+/-2% (GM) and -3.9+/-2.6% (WM); BOLD responses were 2.4+/-0.7% (GM) and 0.8+/-0.2% (WM). The use of a separate neck coil for spin labeling significantly increased CBF signal-to-noise ratio and the use of small receive-only surface coil significantly increased signal-to-noise ratio and spatial resolution. This study sets the stage for quantitative perfusion imaging and CBF fMRI for neurological diseases in anesthetized and awake monkeys.

Animals↗

Isolation of bacteria able to grow on both polyethylene glycol (PEG) and polypropylene glycol (PPG) and their PEG/PPG dehydrogenases.

Two bacterial consortia growing on a random copolymer of ethylene glycol and propylene glycol units were obtained by enrichment cultures from various microbial samples. Six major strains included in both consortia were purified and identified as Sphingomonads, Pseudomonas sp. and Stenotrophomonas maltophilia. Three of them (Sphingobium sp. strain EK-1, Sphingopyxis macrogoltabida strain EY-1, and Pseudomonas sp. strain PE-2) utilized both PEG and polypropylene glycol (PPG) as a sole carbon source. Four PEG-utilizing bacteria had PEG dehydrogenase (PEG-DH) activity, which was induced by PEG. PCR products from DNA of these bacteria generated with primers designed from a PEG-DH gene (AB196775 for S. macrogoltabida strain 103) indicated the presence of a sequence that is the homologous to the PEG-DH gene (99% identity). On the other hand, five PPG-utilizing bacteria had PPG dehydrogenase (PPG-DH) activity, but the activity was constitutive. PCR of a PPG-DH gene was performed using primers designed from a polyvinyl alcohol dehydrogenase (PVA-DH) gene (AB190288 for Sphingomonas sp. strain 113P3) because a PPG-DH gene has not been cloned yet, but both PPG-DH and PVA-DH were active toward PPG and PVA (Mamoto et al. 2006). PCR products of the five strains did not have similarity to each other or to oxidoreductases including PVA-DH.

Alcohol Oxidoreductases↗

Activity and effective connectivity of parietal and occipital cortical regions during haptic shape perception.

It is now widely accepted that visual cortical areas are active during normal tactile perception, but the underlying mechanisms are still not clear. The goal of the present study was to use functional magnetic resonance imaging (fMRI) to investigate the activity and effective connectivity of parietal and occipital cortical areas during haptic shape perception, with a view to potentially clarifying the role of top-down and bottom-up inputs into visual areas. Subjects underwent fMRI scanning while engaging in discrimination of haptic shape or texture, and in separate runs, visual shape or texture. Accuracy did not differ significantly between tasks. Haptic shape-selective regions, identified on a contrast between the haptic shape and texture conditions in individual subjects, were found bilaterally in the postcentral sulcus (PCS), multiple parts of the intraparietal sulcus (IPS) and the lateral occipital complex (LOC). The IPS and LOC foci tended to be shape-selective in the visual modality as well. Structural equation modelling was used to study the effective connectivity among the haptic shape-selective regions in the left hemisphere, contralateral to the stimulated hand. All possible models were tested for their fit to the correlations among the observed time-courses of activity. Two equivalent models emerged as the winners. These models, which were quite similar, were characterized by both bottom-up paths from the PCS to parts of the IPS, and top-down paths from the LOC and parts of the IPS to the PCS. We conclude that interactions between unisensory and multisensory cortical areas involve bidirectional information flow.

Adult↗

Attention shift in human verbal working memory: priming contribution and dynamic brain activation.

When multiple items in working memory need to be accessed and manipulated, the internal attention should switch between them and, this switching process is time consuming. However, it is not clear how much of this switching cost is due to the existence or absence of the stimulus identification priming. With a figure identification and counting task, we demonstrate a small but significant priming contribution to this attention-switching cost. Furthermore, through 64-channel event-related potential (ERP) recordings, we found two ERP correlates (at 280 ms and 388 ms) of this internal attention-switching function. Source localization analysis shows dynamic brain activation starts from the temporal-occipital region and finishes in the left prefrontal cortex. The occipital-prefrontal and cingulate-prefrontal co-activations were orderly observed. We discuss the present ERP results along with our previous fMRI findings and suggest a dominant role of the left prefrontal cortex associated with attention shifts in verbal working memory.

Adult↗

Thirsty heroin addicts show different fMRI activations when exposed to water-related and drug-related cues.

Relapse to drug use is frequently preceded or caused by craving, an intense desire for drug. Advances in functional brain imaging techniques make it possible to directly investigate this special mental state in vivo and non-invasively. Extant imaging studies on craving have been mostly on cocaine which is the dominant drug abused in the U.S. Employing functional MRI, we examined substance specificity of the neural circuitry underlying craving for heroin. Heroin is the primary drug abused in south-east Asia and has, particularly, become a serious social problem for China in recent years. Following abstinence from water and drug, 14 active heroin addicts (all male, mean age 33.2 years, average drug use history 7.1 years) underwent scanning inside a 1.5T Philips MR scanner during exposure to water-related, drug-related, and neutral cues. Water-related cues elicited anterior cingulate activation (Brodmann's area BA 32/24). Drug-related cues activated bilateral inferior frontal cortex (BA 44/45), confirming the critical role of prefrontal cortex in drug craving. Results suggest heroin craving may involve different neural substrates than do desire from basic physiological drives, such as thirst. As the first fMRI study of heroin craving, our study adds to the scant but much-needed brain imaging literature on heroin addiction.

Adolescent↗

New double quantum coherence filter for localized detection of glutathione in vivo.

In this work, a new double quantum filter for glutathione (GSH) editing is introduced, combined with the point-resolved spectroscopy localization sequence (PRESS), and demonstrated in vivo. Compared to the conventional double quantum coherence filter, the new filter has two major advantages. First, it eliminates the need for calibration scans for optimizing the signal yield, making it more efficient and convenient for routine use. Second, it removes the influence of water saturation pulses on the GSH yield, further improving its accuracy. With this method, GSH concentrations in the left and right parietal lobes of five healthy volunteers were determined to be 0.91+/-0.16 mM and 0.89+/-0.16 mM, respectively, in agreement with previous studies.

Brain Chemistry↗

Auto-calibrated parallel spiral imaging.

This work describes an auto-calibrated method for parallel imaging with spiral trajectory. The method is a k-space approach where an interpolation kernel, accounting for coil sensitivity factors, is derived from experimental data and used to interpolate the reduced data set in parallel imaging to estimate the missing k-space data. For the case of spiral imaging, this interpolation kernel is defined along radial directions so that missing spiral interleaves can be estimated directly from neighboring interleaves. This kernel is invariant along the radial direction but varies azimuthally. Therefore, the k-space is divided into angular sectors and sector-specific kernels are used. It is demonstrated experimentally that relatively few sectors are sufficient for accurate reconstruction, allowing for efficient implementation. The interpolation kernels can be derived either from a separate calibration scan or self-calibration data available with a dual-density spiral acquisition. The reconstruction method is implemented with two sampling strategies and experimentally demonstrated to be robust.

Image Processing, Computer-Assisted↗

Tissue specificity of nonlinear dynamics in baseline fMRI.

In this work, recent advances in the field of nonlinear dynamics (NLD) were applied to fMRI data to examine the spatio-temporal properties of BOLD resting state fluctuations. Five human subjects were imaged during resting state (visual fixation) at 3T using single-shot gradient echo planar imaging (EPI). Respiration and cardiac signals were concurrently recorded for retrospectively removing fluctuations due to these physiologic activities. Patterns of singularity in the complex plane (PSC) and Lempel-Ziv complexity (LZ) were used to study the deterministic nonlinearity in resting state fMRI data. The results show that there is greater nonlinearity (higher PSC) and determinism (lower LZ) in gray matter compared to white matter and CSF. In addition, the removal of respiratory and cardiac pulsations decreases the nonlinearity and determinism but does not alter the relative difference between gray matter and white matter. Therefore, our results demonstrate that determinism and nonlinearity in the fMRI data are tissue-specific, suggesting that they reflect native physiologic and metabolic fluctuations and are not a result of physiologic artifacts due to respiration and cardiac pulsation.

Algorithms↗

Long-circulating liposomal contrast agents for magnetic resonance imaging.

Contrast-enhanced magnetic resonance imaging (CE-MRI) is a dynamic technique for imaging vasculature. However, the currently used gadolinium (Gd) chelates, such as Gd-DTPA, restrict the time window for image acquisition due to their rapid elimination from blood and their rapid diffusion into the extravascular space, which prevents their use in steady-state imaging, particularly for MR angiography (MRA). The goal of this study was to prepare long-circulating polyethylene glycol-bearing ((PEG)ylated) liposomes encapsulating Gd chelate, and characterize and demonstrate their utility for MRA. The liposomes were prepared by hydrating a mixture of lipids with gadodiamide (Omniscan). The liposomes were sized down to around 100 nm by extruder and exhaustively dialysed to remove the unencapsulated gadodiamide. The Gd liposomes exhibited a significant sustained (>4 hr) contrast enhancement of the vasculature with improved spatial details in a rat model with little leakage relative to Gd-DTPA controls as shown by MRI. We suggest that such long-circulating liposomal formulations allow for high spatial resolution imaging without the confounding effects of clearance and extravascular diffusion of the agent complicating the data and image analysis.

Animals↗

Off-resonance saturation as a means of generating contrast with superparamagnetic nanoparticles.

This work demonstrates an alternative approach, termed off-resonance saturation (ORS), for generating contrast that is sensitive to superparamagnetic particles. This method leads to a calculated contrast that increases with superparamagnetic nanoparticle concentration. Experimental data demonstrate that in the presence of superparamagnetic particles, an off-resonance effect exists that is distinct from the magnetization transfer (MT) effect and is highly dependent on diffusion. Data show that the dependence on water diffusion becomes most significant at rates of 0.5 x 10(-9) m(2)/s and slower. We investigated the dependence of the off-resonance effect on off-resonance frequency and particle concentration. The data suggest a useful frequency offset range of 500 Hz < |Deltaomega| < 1500 Hz at 3T. This approach may be especially useful in organs and diseases in which diffusion may be altered by pathologies.

Contrast Media↗

Memory in early adolescents born prematurely: a functional magnetic resonance imaging investigation.

This study employed functional magnetic resonance imaging to examine the functional neuroanatomy of the hippocampus and head of the caudate nucleus during 2 different types of memory tasks in a sample of 9 early adolescent children who were born preterm (neonatal intensive care unit [NICU] sample) and a group of 9 age-matched control children who were born at term. The investigation employed delayed match to sample (DMS), delayed nonmatch to sample (DNMS), and spatial memory span tasks, as well as 2 analogous perceptuomotor tasks that placed no demands on memory. The general question examined was whether preterm children show different levels of hippocampal and caudate activation during these tasks when compared to children born at term. The findings indicated that the 2 groups did not differ in functional activation of the hippocampus during the DMS and DNMS tasks. During the encoding phase of the spatial memory span task, the DMS perceptuomotor task, and the spatial memory span perceptuomotor task, the NICU sample showed greater activation change in the right caudate nucleus, and less right caudate activation change during the test phase. During the spatial span perceptuomotor task, the preterm group showed reduced activation change in the left caudate nucleus during both the encoding and test phase. Also, during the DMS perceptuomotor task, the NICU group showed increased activation change in the left caudate nucleus during encoding and decreased activation change at test. The implications of these findings for understanding the functional neuroanatomy of memory deficits are discussed, as is the potential for distinguishing the effects of neural plasticity from those of typical brain maturational processes.

Adolescent↗

Anti-SARS-CoV immunity induced by a novel CpG oligodeoxynucleotide.

To develop CpG oligodeoxynucleotides (CpG ODNs) based therapy for prevention and treatment of severe acute respiratory syndrome (SARS), we selected a novel CpG ODN (BW001), which displays B-type CpG ODN structure feature at the 5' and A-type CpG ODN structure feature at the 3', and tested for its anti-SARS-CoV activity. We found that the supernatants of human PBMCs stimulated by BW001 significantly protected Vero cells from SARS-CoV infection. BW001 could stimulate human PBMCs and pDCs to secrete high level of IFN-alpha and promote human PBMCs and B cells to proliferate. Furthermore, we demonstrated that BW001 could activate CD19+ B cells and CD56+ NK cells in human PBMCs. In addition, BW001 could enhance NK cytotoxicity and IFN-gamma secretion in human PBMCs. Together, BW001 represents a novel type of CpG ODN and may have potential for the development of treatment and prevention for SARS as well as other viral associated diseases.

Adjuvants, Immunologic↗

Short-term visual deprivation alters neural processing of tactile form.

Blindness is known to alter the responsiveness of visual cortex. Recently, reversible visual deprivation by blindfolding has been shown to affect non-visual abilities as well as visual cortical function. Here we investigated the effect of 2 h of blindfolding on cerebral cortical activation patterns during tactile form perception, using functional magnetic resonance imaging. Two form tasks were used, one requiring discrimination of global stimulus form and the other, detection of a gap in a bar. Blindfolded subjects showed significant deactivation during these tasks in regions that are intermediate in the hierarchy of visual shape processing: probable V3A and ventral intraparietal sulcus (vIPS). These regions lacked signal changes in controls. There were also task-specific increases in activation in blindfolded relative to control subjects, favoring the form over the gap task, along the IPS and in regions of frontal and temporal cortex. We also found alterations of functional connectivity that corresponded to the activity differences, with the emergence of correlated activity between the vIPS and V3A in blindfolded subjects. We conclude that blindfolding sighted individuals for a 2-h period induces significant changes in the neural processing of tactile form, probably reflecting short-term neural plasticity.

Adult↗

Age-dependent brain activation during forward and backward digit recall revealed by fMRI.

In this study, brain activation associated with forward and backward digit recall was examined in healthy old and young adults using functional MRI. A number of areas were activated during the recall. In young adults, greater activation was found in the left prefrontal cortex (BA9) and the left occipital visual cortex during backward digit recall than forward digit recall. In contrast, the activation in the right inferior frontal gyrus (BA 44/45) was more extensive in forward digit recall than in backward digit recall. In older adults, backward recall generated stronger activation than forward recall in most areas, including the frontal, the parietal, the occipital, and the temporal cortices. In the backward recall condition, the right inferior frontal gyrus (BA44/45) showed more activation in the old group than in the young group. These results suggest that different neural mechanisms may be involved in forward and backward digit recall and brain functions associated with these two types of recall are differentially affected by aging.

Adult↗

Support vector machines for temporal classification of block design fMRI data.

This paper treats support vector machine (SVM) classification applied to block design fMRI, extending our previous work with linear discriminant analysis [LaConte, S., Anderson, J., Muley, S., Ashe, J., Frutiger, S., Rehm, K., Hansen, L.K., Yacoub, E., Hu, X., Rottenberg, D., Strother S., 2003a. The evaluation of preprocessing choices in single-subject BOLD fMRI using NPAIRS performance metrics. NeuroImage 18, 10-27; Strother, S.C., Anderson, J., Hansen, L.K., Kjems, U., Kustra, R., Siditis, J., Frutiger, S., Muley, S., LaConte, S., Rottenberg, D. 2002. The quantitative evaluation of functional neuroimaging experiments: the NPAIRS data analysis framework. NeuroImage 15, 747-771]. We compare SVM to canonical variates analysis (CVA) by examining the relative sensitivity of each method to ten combinations of preprocessing choices consisting of spatial smoothing, temporal detrending, and motion correction. Important to the discussion are the issues of classification performance, model interpretation, and validation in the context of fMRI. As the SVM has many unique properties, we examine the interpretation of support vector models with respect to neuroimaging data. We propose four methods for extracting activation maps from SVM models, and we examine one of these in detail. For both CVA and SVM, we have classified individual time samples of whole brain data, with TRs of roughly 4 s, thirty slices, and nearly 30,000 brain voxels, with no averaging of scans or prior feature selection.

Algorithms↗

Functional connectivity changes with concentration of sevoflurane anesthesia.

Low-frequency oscillations (<0.08 Hz) have been detected in functional magnetic resonance imaging studies, and appear to be synchronized between functionally related areas. The effect of anesthetic agents on cortical activity is not completely characterized. This study assessed the effect of anesthesia on the temporal relations in activity in the motor cortices. Resting-state magnetic resonance data were acquired on six volunteers under different anesthetic states (using 0.0%, 2.0% and 1.0% stable end-tidal sevoflurane). Across all volunteers, the number of significant voxels (p<2.5 x 10) in the functional connectivity maps was reduced by 78% for light anesthesia and by 98% for deep anesthesia, compared with the awake state. Additionally, significant correlations in the connectivity maps were bilateral in the awake state but unilateral in the light anesthesia state.

Adult↗

Connectivity exploration with structural equation modeling: an fMRI study of bimanual motor coordination.

The present fMRI study explores the connectivity among motor areas in a bimanual coordination task using the analysis framework of structural equation modeling (SEM). During bimanual finger tapping at different frequency ratios, temporal correlations of activations between left/right primary motor cortices (MI), left/right PMdc (caudal dorsal premotor area) and supplementary motor cortex (SMA) were detected and used as inputs to the SEM analysis. SEM was extended from its traditional role as a confirmatory analysis to be used as an exploratory technique to determine the most statistically significant connectivity model given a set of cortical areas based on anatomic constraints. The resultant network exhibits coupling from left MI to right MI, links from both PMs to the two MIs, a negative interaction from left PM to right PM, and functional influence from SMA to right MI and right PM, revealing contributions of these areas to bimanual coordination.

Adolescent↗