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Xue-Cheng Tai

Publications and source records attributed to Xue-Cheng Tai.

3 recordsLinked to original sources
PubMed2006

Automated detection of tunneling nanotubes in 3D images.

BACKGROUND: This paper presents an automated method for the identification of thin membrane tubes in 3D fluorescence images. These tubes, referred to as tunneling nanotubes (TNTs), are newly discovered intercellular structures that connect living cells through a membrane continuity. TNTs are 50-200 nm in diameter, crossing from one cell to another at their nearest distance. In microscopic images, they are seen as straight lines. It now emerges that the TNTs represent the underlying structure of a new type of cell-to-cell communication. METHODS: Our approach for the identification of TNTs is based on a combination of biological cell markers and known image processing techniques. Watershed segmentation and edge detectors are used to find cell borders, TNTs, and image artifacts. Mathematical morphology is employed at several stages of the processing chain. Two image channels are used for the calculations to improve classification of watershed regions into cells and background. One image channel displays cell borders and TNTs, the second is used for cell classification and displays the cytoplasmic compartments of the cells. The method for cell segmentation is 3D, and the TNT detection incorporates 3D information using various 2D projections. RESULTS: The TNT- and cell-detection were applied to numerous 3D stacks of images. A success rate of 67% was obtained compared with manual identification of the TNTs. The digitalized results were used to achieve statistical information of selected properties of TNTs. CONCLUSION: To further explore these structures, automated detection and quantification is desirable. Consequently, this automated recognition tool will be useful in biological studies on cell-to-cell communication where TNT quantification is essential.

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PubMed2006

A binary level set model and some applications to Mumford-Shah image segmentation.

In this paper, we propose a PDE-based level set method. Traditionally, interfaces are represented by the zero level set of continuous level set functions. Instead, we let the interfaces be represented by discontinuities of piecewise constant level set functions. Each level set function can at convergence only take two values, i.e., it can only be 1 or -1; thus, our method is related to phase-field methods. Some of the properties of standard level set methods are preserved in the proposed method, while others are not. Using this new method for interface problems, we need to minimize a smooth convex functional under a quadratic constraint. The level set functions are discontinuous at convergence, but the minimization functional is smooth. We show numerical results using the method for segmentation of digital images.

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PubMed2004

Noise removal using smoothed normals and surface fitting.

In this work, we use partial differential equation techniques to remove noise from digital images. The removal is done in two steps. We first use a total-variation filter to smooth the normal vectors of the level curves of a noise image. After this, we try to find a surface to fit the smoothed normal vectors. For each of these two stages, the problem is reduced to a nonlinear partial differential equation. Finite difference schemes are used to solve these equations. A broad range of numerical examples are given in the paper.

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