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Yasser M Kadah

Publications and source records attributed to Yasser M Kadah.

9 recordsLinked to original sources

Deconvolution-interpolation gridding (DING): accurate reconstruction for arbitrary k-space trajectories.

A simple iterative algorithm, termed deconvolution-interpolation gridding (DING), is presented to address the problem of reconstructing images from arbitrarily-sampled k-space. The new algorithm solves a sparse system of linear equations that is equivalent to a deconvolution of the k-space with a small window. The deconvolution operation results in increased reconstruction accuracy without grid subsampling, at some cost to computational load. By avoiding grid oversampling, the new solution saves memory, which is critical for 3D trajectories. The DING algorithm does not require the calculation of a sampling density compensation function, which is often problematic. DING's sparse linear system is inverted efficiently using the conjugate gradient (CG) method. The reconstruction of the gridding system matrix is simple and fast, and no regularization is needed. This feature renders DING suitable for situations where the k-space trajectory is changed often or is not known a priori, such as when patient motion occurs during the scan. DING was compared with conventional gridding and an iterative reconstruction method in computer simulations and in vivo spiral MRI experiments. The results demonstrate a stable performance and reduced root mean square (RMS) error for DING in different k-space trajectories.

Algorithms↗

Navigator echo motion artifact suppression in synthetic aperture ultrasound imaging.

We develop a simple yet effective technique for motion artifact suppression in ultrasound images reconstructed from multiple acquisitions. Assuming a rigid-body motion model, a navigator echo is computed for each acquisition and then registered to estimate the motion in between acquisitions. By detecting this motion, it is possible to compensate for it in the reconstruction step to obtain images that are free of lateral motion artifacts. The theory and practical implementation details are described and the performance is analyzed using computer simulations as well as real data. The results indicate the potential of the new method for real-time implementation in lower cost ultrasound imaging systems.

Algorithms↗

Enhancing measured diffusion anisotropy in gray matter by eliminating CSF contamination with FLAIR.

In this work, the effect of fluid-attenuated inversion recovery (FLAIR) on measured diffusion anisotropy was investigated in gray matter. DTI data were obtained with and without FLAIR in six normal volunteers. The application of FLAIR was experimentally demonstrated to lead to a consistent increase in fractional anisotropy (FA) in gray-matter regions, which was attributed to suppressed partial volume effects from CSF. In addition to these experimental results, Monte Carlo simulations were performed to ascertain the effect of noise on the measured FA under the experimental conditions of this study. The experimentally observed effect of noise was corroborated by the simulation, indicating that the increase in the measured FA was not due to a noise-related bias but to an actual increase in diffusion anisotropy. This enhanced measurement of diffusion anisotropy can be potentially used to differentiate directionally dependent structure and tracking fibers in gray matter.

Anisotropy↗

Floating navigator echo (FNAV) for in-plane 2D translational motion estimation.

A modification of the classical navigator echo (NAV) technique is presented whereby both 2D translational motion components are computed from a single navigator line. Instead of acquiring the NAV at the center of the k-space, a kx line is acquired off-center in the phase-encoding (ky) direction as a floating NAV (FNAV). It is shown that the translational motion in both the readout and phase-encoding directions can be computed from this line. The algorithm used is described in detail and verified experimentally. The new technique can be readily implemented to replace classic NAV in MRI sequences, with little to no additional cost or complexity. The new method can help suppress 2D translational motion and provide more accurate motion estimates for other motion-suppression techniques, such as the diminishing variance algorithm.

Algorithms↗

Adaptive denoising of event-related functional magnetic resonance imaging data using spectral subtraction.

A new adaptive signal-preserving technique for noise suppression in event-related functional magnetic resonance imaging (fMRI) data is proposed based on spectral subtraction. The proposed technique estimates a parametric model for the power spectrum of random noise from the acquired data based on the characteristics of the Rician statistical model. This model is subsequently used to estimate a noise-suppressed power spectrum for any given pixel time course by simple subtraction of power spectra. The new technique is tested using computer simulations and real data from event-related fMRI experiments. The results show the potential of the new technique in suppressing noise while preserving the other deterministic components in the signal. Moreover, we demonstrate that further analysis using principal component analysis and independent component analysis shows a significant improvement in both convergence and clarity of results when the new technique is used. Given its simple form, the new method does not change the statistical characteristics of the signal or cause correlated noise to be present in the processed signal. This suggests the value of the new technique as a useful preprocessing step for fMRI data analysis.

Algorithms↗

Determination of the optical properties of a two-layer tissue model by detecting photons migrating at progressively increasing depths.

We have investigated a method for solving the inverse problem of determining the optical properties of a two-layer turbid model. The method is based on deducing the optical properties (OPs) of the top layer from the absolute spatially resolved reflectance that results from photon migration within only the top layer by use of a multivariate calibration model. Then the OPs of the bottom layer are deduced from relative frequency-domain (FD) reflectance measurements by use of the two-layer FD diffusion model. The method was validated with Monte Carlo FD reflectance profiles and experimental measurements of two-layer phantoms. The results showed that the method is useful for two-layer models with interface depths of >5 mm; the OPs were estimated, within a relatively short time (<1 min), with a mean error of <10% for the Monte Carlo reflectance profiles and with errors of <25% for the phantom measurements.

Algorithms↗

Study of features based on nonlinear dynamical modeling in ECG arrhythmia detection and classification.

We present a study of the nonlinear dynamics of electrocardiogram (ECG) signals for arrhythmia characterization. The correlation dimension and largest Lyapunov exponent are used to model the chaotic nature of five different classes of ECG signals. The model parameters are evaluated for a large number of real ECG signals within each class and the results are reported. The presented algorithms allow automatic calculation of the features. The statistical analysis of the calculated features indicates that they differ significantly between normal heart rhythm and the different arrhythmia types and, hence, can be rather useful in ECG arrhythmia detection. On the other hand, the results indicate that the discrimination between different arrhythmia types is difficult using such features. The results of this work are supported by statistical analysis that provides a clear outline for the potential uses and limitations of these features.

Algorithms↗

Real-time speckle reduction and coherence enhancement in ultrasound imaging via nonlinear anisotropic diffusion.

This paper presents a novel approach for speckle reduction and coherence enhancement of ultrasound images based on nonlinear coherent diffusion (NCD) model. The proposed NCD model combines three different models. According to speckle extent and image anisotropy, the NCD model changes progressively from isotropic diffusion through anisotropic coherent diffusion to, finally, mean curvature motion. This structure maximally low-pass filters those parts of the image that correspond to fully developed speckle, while substantially preserving information associated with resolved-object structures. The proposed implementation algorithm utilizes an efficient discretization scheme that allows for real-time implementation on commercial systems. The theory and implementation of the new technique are presented and verified using phantom and clinical ultrasound images. In addition, the results from previous techniques are compared with the new method to demonstrate its performance.

Algorithms↗

A new real-time retinal tracking system for image-guided laser treatment.

A new system is proposed for tracking sensitive areas in the retina for computer-assisted laser treatment of choroidal neovascularization (CNV). The system consists of a fundus camera using red-free illumination mode interfaced to a computer that allows real-time capturing of video input. The first image acquired is used as the reference image and utilized by the treatment physician for treatment planning. A grid of seed contours over the whole image is initiated and allowed to deform by splitting and/or merging according to preset criteria until the whole vessel tree is demarcated. Then, the image is filtered using a one-dimensional Gaussian filter in two perpendicular directions to extract the core areas of such vessels. Faster segmentation can be obtained for subsequent images by automatic registration to compensate for eye movement and saccades. An efficient registration technique is developed whereby some landmarks are detected in the reference frame then tracked in the subsequent frames. Using the relation between these two sets of corresponding points, an optimal transformation can be obtained. The implementation details of proposed strategy are presented and the obtained results indicate that it is suitable for real-time location determination and tracking of treatment positions.

Algorithms↗