Biomedical subjects

Yong Xiao

Publications and source records attributed to Yong Xiao.

8 recordsLinked to original sources

PubMed2024

Metagenomic insights into ecological risk of antibiotic resistome and mobilome in riverine plastisphere under impact of urbanization.

Microplastics (MPs) are of increasing concern due to their role as reservoirs for antibiotic resistance genes (ARGs) and pathogens. To date, few studies have explored the influence of anthropogenic activities on ARGs and mobile genetic elements (MGEs) within various riverine MPs, in comparison to their natural counterparts. Here an in-situ incubation was conducted along heavily anthropogenically-impacted Houxi River to characterize the geographical pattern of antibiotic resistome, mobilome and pathogens inhabiting MPs- and leaf-biofilms. The metagenomics result showed a clear urbanization-driven profile in the distribution of ARGs, MGEs and pathogens, with their abundances sharply increasing 4.77 to 19.90 times from sparsely to densely populated regions. The significant correlation between human fecal marker crAssphage and ARG (R2 = 0.67, P=0.003) indicated the influence of anthropogenic activity on ARG proliferation in plastisphere and natural leaf surfaces. And mantel tests and random forest analysis revealed the impact of 17 socio-environmental factors, e.g., population density, antibiotic concentrations, and pore volume of materials, on the dissemination of ARGs. Partial least squares-path modeling further unveiled that intensifying human activities not only directly boosted ARGs abundance but also exerted a comparable indirect impact on ARGs propagation. Furthermore, the polyvinylchloride plastisphere created a pathogen-friendly habitat, harboring higher abundances of ARGs and MGEs, while polylactic acid are not likely to serve as vectors for pathogens in river, with a lower resistome risk score than that in leaf-biofilms. This study highlights the diverse ecological risks associated with the dissemination of ARGs and pathogens in varied MPs, offering insights for the policymaking of usage and control of plastics within urbanization.

Urbanization↗

PubMed2006

Major histocompatibility complex class II molecules promote human immunodeficiency virus type 1 assembly and budding to late endosomal/multivesicular body compartments.

Human immunodeficiency virus type 1 (HIV-1) assembly, budding, and release occur mostly at the plasma membrane in T lymphocytes as well as in established nonlymphoid cell lines, while in macrophages these processes occur primarily in intracellular compartments that harbor late endosomal/multivesicular body (LE/MVB) markers, including human leukocyte antigen DR (HLA-DR). Major histocompatibility complex class II molecules (MHC-II), which are expressed in macrophages and activated T cells, have been previously reported to induce the formation of multilaminar and multivesicular endocytic MHC-II-like structures analogous to MVB upon their expression in HEK 293 cells. Here, we have examined the role of MHC-II in HIV-1 Gag targeting as well as in virus assembly and release. Expression of HLA-DR in nonlymphoid cell lines induced a relocation of Gag to intracellular compartments that harbored LE/MVB markers and increased the accumulation of viral particles assembling intracellularly. Consequently, viral production and release from the cell surface was found to be substantially decreased in HLA-DR-expressing cells. This process was specific, since it was not observed with HLA-DR molecules lacking their cytoplasmic tails, nor with structurally related but functionally distinct MHC-II molecules such as HLA-DM or HLA-DO. Importantly, virus released intracellularly in HLA-DR-expressing cells retained infectivity. Overall, these results suggest a role of MHC-II molecules in promoting HIV-1 assembly and budding to LE/MVB and raise the possibility that this activity might be part of a normal pathway of virus production in cell types physiologically expressing MHC-II molecules, such as macrophages.

Cell Line↗

PubMed2006

[Culture medium and grading culture technics for bioflocculant production by Paenibacillus polymyxa GA1].

A bacterial strain named GA1 which can produce bioflocculant with high flocculating activity was isolated from soil. The strain was identified as Paenibacillus polymyxa according to its morphological, physiological and biochemical characters, as well as 16S rDNA sequence (GenBank Accession number: DQ166375) similarity comparison. The results indicated that sucrose and yeast extract were the optimal carbon and nitrogen sources for bioflocculant production. Furthermore, the mass ratio of sucrose to yeast extract and the optimal sucrose concentration were ascertained. The optimum component proportion of medium (g/L) is sucrose 40.0, yeast extract 4.0, K2HPO4 5.0, KH2PO4 2.0, NaCl 0.1, MgSO4 0.2. The culture conditions including initial pH, temperature, agitation rate and inoculation quantity of strain GA1 were ascertained. Based on the relation of bacterium growth and bioflocculant production, grading culture was applied to bioflocculant production of GA1. The experimental result show that grading culture can keep high bioflocculant yield as well as shorten time of flocculant production.

Bacillus↗

PubMed2006

[DNA extraction methods of compost for molecular ecology analysis].

Molecular ecology provides new techniques for studying compost microbes, and the DNA extraction is the basis of molecular techniques. Because of the contamination of humic acids, it turns to be more difficult for compost microbial DNA extraction. Three different approaches, named as lysozyme lysis, ultrasonic lysis and proteinase K lysis with CTAB, were used to extract the total DNA from compost. The detection performed on a nucleic acids and protein analyzer showed that all the three approaches produced high DNA yields. The agarose gel electrophoresis showed that the DNA fragments extracted from compost had a length of about 23 kb. A eubacterial 16S rRNA gene targeted primer pair (27F and 1 495R) was used for PCR amplification, and all the samples got almost the full length 16S rDNA sequence (about 1.5 kb). After digested by restriction endonucleases (Hae Ill and Alu I), the restriction map showed relatively identical microbial diversity in the DNA, which was extracted by the three different approaches. All the compost microbial DNA extracted by the three different approaches could be used for molecular ecological study, and researchers should choose the right approach for extracting microbial DNA from compost based on the facts.

Bacteria↗

PubMed2005

Identification of prior candidate genes for Sclerotinia local resistance in Brassica napus using Arabidopsis cDNA microarray and Brassica-Arabidopsis comparative mapping.

Arabidopsis cDNA arrays were used to screen the local-defense-associated genes in oilseed rape (Brassica napus L.) at the challenge of Sclerotinia sclerotiorum. 61 genes with two-fold expression changes were screened out from the local tissue around the necrosis. Among them, 36 unique genes were up-regulated and 25 unique genes were down-regulated. RT-PCR and Northern blot results were consistent with the array results, suggesting Arabidopsis arrays were useful for transcriptional profiling of B. napus genes. Some of these genes were located in the interval of some QTLs for Sclerotinia resistance in B. napus by Brassica-Arabidopsis comparative mapping. These genes may have priority to be pursued for more intensive research.

Arabidopsis↗

PubMed2003

Two-loop renormalization group equations in the standard model.

Two-loop renormalization group equations in the standard model are recalculated. A new coefficient is found in the beta function of the quartic coupling and a class of gauge invariants is found to be absent in the beta functions of hadronic Yukawa couplings. The two-loop beta function of the Higgs mass parameter is presented in complete form.

Journal Article↗

PubMed2003

Isotropic susceptibility shift under MAS: the origin of the split water resonances in 1H MAS NMR spectra of cell suspensions.

Bulk susceptibility variations in a multiphase system such as cultured cells and tissue have two manifestations: a dipolar field component outside the regular heterogenous region which introduces linebroadening, and an isotropic field part which results in a frequency shift. Previous NMR studies have emphasized the utility of magic angle spinning for averaging the dipolar component, particularly if the spins of interest are limited to one phase of a multiphase system such as a sample of liquid with air pockets or glass beads. However, in analyzing spectra from complex multiphase systems, such as cell suspensions and tissues, etc., the isotropic part is often neglected, leading to questionable interpretation of experimental results. The present study demonstrates that under magic angle spinning, the water resonance in NMR experiments of cell suspensions is split into two resolved peaks due to the isotropic susceptibility shift. These two peaks are assigned to a central core of cell free water and an outer cylindrical ring of tightly packed cells in close association with water. A comprehensive theory for this splitting is provided based on a coaxis cylinder model with different susceptibilities. The frequency difference is shown to be dependent on the susceptibility difference and also on the angle of the rotor in the magnetic field. The splitting distance of the two water peaks can be used to measure the susceptibility difference of water in these two phases. The susceptibility difference was measured for three different cell types: 3T3 F442A preadipocyte cells, mouse embryonic stem cells, and human red blood cells.

3T3 Cells↗

PubMed2003

An evaluation of the serological and epidemiological effects of the outer envelope vaccine to leptospira.

BACKGROUND: The Shanghai Institute of Biological Products manufactured successfully a new outer envelope vaccine for leptospira in 1978. It has been confirmed by using animal tests and a number of human body trials that this vaccine is safe and effective, However, results regarding serological and epidemiological effects of the vaccine in population has not been reported. The objective of this study was to evaluate serological and epidemiological effects of this vaccine. METHODS: From May 1998 to May 1999, an evaluation of the serological and epidemiological effects of the outer envelope vaccine for leptospira made by Shanghai Institute of Biological Products was conducted among agricultural population aged 5 to approximately 60 years in an epidemic area of leptospirosis, in Jingzhou District, Jingzhou City, Hubei Province, China by microscopic agglutination test (MAT), cohort study, matched case-control study and screening method. RESULTS: The serological surveillance results of 77 students immunized showed that the successful rates of vaccination with the outer envelope vaccine of L. icterohaemorrhagiae sero-group and L. hebdomadis sero-group leptospira were 79.22% and 77.92%, respectively, the antibody geometric mean titer (GMT) of the two groups were 1:106.71 and 1:63.31, respectively, with 6.7-fold and 4.7-fold rises comparing with the group of those of the antibody before inoculation, and the antibody protective rates of the two groups of outer membrane protein vaccine of leptospira all were 100% at one month after immunization. Higher level antibody against L. icterohaemorrhagiae sero-group leptospira was still maintained at one year after injection. The results of cohort analysis showed that the protective rate of the outer envelope vaccine of leptospira for the same serological groups of leptospira was 75.17%, and the effective index of the vaccine was 4.03. The protective rate of vaccines obtained from 1:2 matched case-control studies was 81.25%, while that estimated by screening method was 75%. CONCLUSIONS: The study results showed that the serological and epidemiological efficiencies of leptospira vaccine all were ideal. In addition, this vaccine had partly protective effect against other sero-groups of leptospira.

Adolescent↗