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Yoshiaki Kobuke

Publications and source records attributed to Yoshiaki Kobuke.

31 records · Page 2Linked to original sources
PubMed2004

Light-harvesting macroring accommodating a tetrapodal ligand based on complementary and cooperative coordinations.

A porphyrin macroring, mimicking the light-harvesting complex of photosynthetic purple bacteria, was synthesized by self-assembling trisporphyrinatoZn(II) complexes with imidazolyl substituents at both molecular terminals. Very strong complementary coordination of imidazolyl to Zn(II) afforded exclusively the cyclic trimer of trisporphyrin under dilute conditions at 27 degrees C in CHCl3/MeOH = 9/1 (v/v). 1H NMR spectra of the macroring indicate the existence of two topological isomers, one symmetric and one asymmetric. Use of three noncoordinated porphyrinatoZn(II) sites allows a tetrapodal ligand to be incorporated into the cavity of the macroring. A Job plot and the clear bending behavior on UV-vis titration indicated the formation a 1:1 complex; the heterogeneity of two topological isomers was not observed, and both isomers similarly accommodated the tetrapodal ligand. The association constant obtained by curve fitting analysis was 8 x 108 M-1 in toluene. This large association constant reflects the cooperative nature of three coordination sites.

Ligands↗
PubMed2004

Dynamic structural change of a twisted hexaporphyrin complex by highly specific molecular recognition.

The highly specific molecular recognition of a twisted hexaporphyrin complex, tris[5,5'-bis[5,10,15-tris[methoxy(ethoxy)(2)carbonylethyl]porphyrinatozinc(II)]-2,2'-bipyridine]ruthenium(II) chloride (2), is described. Complex 2 has two trisporphyrin binding sites and can bind two triamines, tris(2-aminoethyl)amine (3) (K(1) = 3.0 x 10(8) M(-1), K(2) = 3.0 x 10(7) M(-1)), 1,1,1-tris(aminomethyl)ethane (4) (K(1) = 2.0 x 10(7) M(-1), K(2) = 1.4 x 10(6) M(-1)), tris(3-aminopropyl)amine (5) (K(1) = 3.5 x 10(6) M(-1), K(2) = 6.0 x 10(6) M(-1)), and 1,3,5-tris(aminomethyl)benzene (6) (K(1) = 2.9 x 10(6) M(-1), K(2) = 1.2 x 10(6) M(-1)), strongly with its torsional motion. The 1:2 complex between 2 and the best fit triamine 3 showed the nature of the specific rigid structure in the UV-vis, fluorescence, and (1)H NMR spectra and isothermal titration calorimetry (ITC) measurements.

Journal Article↗
PubMed2003

Proofs of macrocyclization of gable porphyrins as mimics of photosynthetic light-harvesting complexes.

Porphyrin macrocycles composed of five and six units of m-gable imidazolylporphyrinatozinc (1-Zn) were synthesized by self-assembled cyclization followed by ring-closing metathesis linkings. Each porphyrin macrocycle was isolated by GPC chromatography, and their molecular weights were determined by MALDI-TOF mass spectroscopy. These structures represent mimics of light-harvesting complexes in photosynthetic bacteria. [structure: see text]

Journal Article↗
PubMed2003

Strong two-photon absorption of self-assembled butadiyne-linked bisporphyrin.

Two-photon absorption (2PA) properties of self-assembled porphyrins were investigated. The butadiyne-linked porphyrin array exhibited a 20 times larger 2PA cross section than the meso-meso-linked self-assembled array due to the expansion of pi-conjugation. Higher-order nonlinear absorption was also observed in the former porphyrin.

Journal Article↗
PubMed2003

Hexameric macroring of gable-porphyrins as a light-harvesting antenna mimic.

Construction of a self-assembled supramolecular macroring that has distances and orientations of porphyrin dimer units in close analogy to those of the natural light-harvesting complexes was achieved. In natural light-harvesting complexes, bacteriochlorophyll-a's are arranged in macroring structures by coordination from imidazolyl side chains. A structural determination of a light-harvesting antenna complex (LH2) elucidated the arrangement of 18 bacteriochlorophyll-a's in a slipped-cofacial way with C9 symmetry in B850 in 1995. To obtain such an elegant macroring architecture as an artificial light-harvesting complex, we connected slipped-cofacial dimers of imidazolylporphyrins in a gable-porphyrin orientation. The introduction of zinc assembled by coordination porphyrins with originally a broad molecular weight distribution (MWD). When coordination bonds were cleaved and reorganized under high dilution conditions using chloroform/methanol solution, the MWD was perfectly converged. This crop gave particle images of a uniform height by atomic force microscopy measurements. Further purification was successfully achieved by gel permeation chromatography, and the first eluting component gave a diameter corresponding to the cyclic hexamer of gable-porphyrins from a small-angle X-ray scattering measurement with synchrotron radiation. In summary, porphyrin assemblies in a macroring arrangement were constructed using the gable-porphyrin motif, and their photophysical properties are highly interesting.

Biomimetic Materials↗
PubMed2003

Structural regulation of a peptide-conjugated graft copolymer: a simple model for amyloid formation.

The self-assembly of peptides and proteins into beta-sheet-rich high-order structures has attracted much attention as a result of the characteristic nanostructure of these assemblies and because of their association with neurodegenerative diseases. Here we report the structural and conformational properties of a peptide-conjugated graft copolymer, poly(gamma-methyl-L-glutamate) grafted polyallylamine (1) in a water-2,2,2-trifluoroethanol solution as a simple model for amyloid formation. Atomic force microscopy revealed that the globular peptide 1 self-assembles into nonbranching fibrils that are about 4 nm in height under certain conditions. These fibrils are rich in beta-sheets and, similar to authentic amyloid fibrils, bind the amyloidophilic dye Congo red. The secondary and quaternary structures of the peptide 1 can be controlled by manipulating the pH, solution composition, and salt concentration; this indicates that the three-dimensional packing arrangement of peptide chains is the key factor for such fibril formation. Furthermore, the addition of carboxylic acid-terminated poly(ethylene glycol), which interacts with both of amino groups of 1 and hydrophobic PMLG chains, was found to obviously inhibit the alpha-to-beta structural transition for non-assembled peptide 1 and to partially cause a beta-to-alpha structural transition against the 1-assembly in the beta-sheet form. These findings demonstrate that the amyloid fibril formation is not restricted to specific protein sequences but rather is a generic property of peptides. The ability to control the assembled structure of the peptide should provide useful information not only for understanding the amyloid fibril formation, but also for developing novel peptide-based material with well-defined nanostructures.

Amyloid↗
PubMed2002

Amyloid formation of native folded protein induced by peptide-based graft copolymer.

We report here that a native folded holo-myoglobin, when incubated with a synthetic amyloidogenic peptide in aqueous solutions, forms fibrils. These fibrils took a cross-beta form (inter-strand spacing: 4.65 A and inter-sheet spacing: 10.65 A) and bound the amyloidophilic dye Congo red as did the authentic amyloid fibrils. In contrast such fibril formation of myoglobin did not occur in the absence of the peptide. These results suggest the possibility that inter-molecular interaction of native protein with the amyloidogenic peptide trigger the amyloid formation even for the non-pathogenic native protein like myoglobin, which itself exists as a globular form, under certain conditions.

Amyloid↗
PubMed2002

Photocurrent generation system incorporated with antenna function.

Porphyrin accumulation onto a self-assembled monolayer (SAM) of imidazole-substituted porphyrins by a supramolecular method to form a chain structure leads to significant increase of light absorption in the visible light region and therefore photocurrents.

Journal Article↗
PubMed2002

Large third-order optical nonlinearity of self-assembled porphyrin oligomers.

Third-order nonlinear optical properties of two series of self-assembled porphyrin wires, one being terminated by zinc porphyrin and the other by free base porphyrin, were measured by femtosecond time-resolved optical Kerr effect. The hyperpolarizability values of the latter series were extremely large ranging from 10-30 to 10-29 esu, 10 times larger than the former. The behavior is accounted for by the contribution of terminal free base porphyrin to enhance the molecular polarization by acceptor nature toward central metalloporphyrin array.

Journal Article↗