Biomedical subjects

Yoshiyuki Kawazoe

Publications and source records attributed to Yoshiyuki Kawazoe.

At least 19 recordsLinked to original sources

PubMed2006

Excited state properties and quadratic optical nonlinearities in charged organic chromophores: theoretical analysis.

As it has been found experimentally [K. Clays and B. Coe, Chem. Mater. 15, 642 (2003); B. J. Coe et al., 126, 10418 (2004)], elongation of the conjugation path length and N-arylation in stilbazolium chromophores both lead to substantial enhancement of the molecular optical nonlinearities. In the present contribution the authors perform a quantum chemical analysis of the excited state properties and quadratic nonlinear optical responses of a series of this type of dyes. Nonlinear optical responses are estimated by both finite-field and two-state model approaches that demonstrate an excellent qualitative mutual agreement. Time-dependent density functional theory calculations on the isolated cations predict redshift in the energy of the intramolecular charge transfer transition that is overestimated for cations with the longer conjugation path length. At the same time, in comparison with the Stark spectroscopy measurements the differences between the excited and ground state dipole moments are grossly underestimated for all compounds. The inclusion of solvent effect by polarizable continuum model affords a better agreement with experiment for these quantities. The authors' calculations demonstrate the crucial dependence of the electronic excitation properties on the way of the investigated compound geometry optimization. The origin of such dependence is discussed.

Journal Article↗

PubMed2006

The influence of correlation on the interpretation of Hund's multiplicity rule: A quantum Monte Carlo study.

A systematic quantum Monte Carlo study of 2p atoms (C, N, O) and 3p atoms (Si, P, S) is performed to investigate the influence of correlation on the interpretation of Hund's multiplicity rule, which is an extension of our previous study of the carbon atom [J. Chem. Phys. 121, 7144 (2004)] to heavier atoms. The accuracy in the present study is significantly improved as compared with the previous study. A detailed analysis of the correlation contribution to individual energy components of the total energy is given beyond the self-consistent Hartree-Fock calculation. The stability of the highest spin-multiplicity state of all the atoms is ascribed to the greater electron-nucleus attraction energy that is gained at the cost of increasing the electron-electron repulsion energy as well as the kinetic energy. The present study demonstrates that correlation does not change the above conclusion due to the Hartree-Fock theory to support Boyd's less screening mechanism.

Journal Article↗

PubMed2006

[Discovery of silicon fullerene and its application to nanomedicine].

By ab initio supercomputer simulation highly symmetrical cage-structures of silicon with nanometer-sizes were predicted without any experimental parameters. These novel structures, which now are called silicon fullerenes have been produced experimentally following our theoretical predictions. Since silicon is manufactured with ultra-high purity and cheep in cost, and is safe for health, all of these facts make it possible to be used in medical applications. Some of these nanostructured materials have appropriate optical properties emitting strong visible light suitable for cancer detections with additional peptide which has antigen-antibody reaction. Presently we select CdSe nanoparticles for actual in vivo experiments which already commercialized, and successful results to detect the exact position of cancer for mouse from outside of the body have been obtained.

Animals↗

PubMed2005

Clustering of Ti on a C60 surface and its effect on hydrogen storage.

Recent efforts in finding materials suitable for storing hydrogen with large gravimetric density have focused attention on carbon-based nanostructures. Unfortunately, pure carbon nanotubes and fullerenes are unsuitable as hydrogen storage materials because of the weak bonding of the hydrogen molecules to the carbon frame. It has been shown very recently that coating of carbon nanostructures with isolated transition metal atoms such as Sc and Ti can increase the binding energy of hydrogen and lead to high storage capacity (up to 8 wt % hydrogen, which is 1.6 times the U.S. Department of Energy target set for 2005). This prediction has led to a great deal of excitement in the fuel cell community [see The Fuel Cell Review, http://fcr.iop.org/articles/features/2/7/4]. However, this prediction depends on the assumption that the metal atoms coated on the fullerene surface will remain isolated. Using first-principles calculations based on density functional theory, we show that Ti atoms would prefer to cluster on the C60 surface, which can significantly alter the nature of hydrogen bonding, thus affecting not only the amount of stored hydrogen but also their thermodynamics and kinetics.

Crystallography, X-Ray↗

PubMed2005

Field emission patterns from first-principles electronic structures: application to pristine and cesium-doped carbon nanotubes.

A general approach is introduced to calculate field emission properties of any kind of nanostructure based on the first-principles local density of states (LDOS) and effective potentials. The experimental field emission spectroscopy images are explained as LDOS at the structure-vacuum barrier, weighted by the probability of electron tunneling. The method excellently reproduces the experimental field emission patterns of pristine capped carbon nanotubes. We show that cesium adsorbates even with a low doping ratio of one dopant per nanotube increase the emission current around 2.5 times, due to a generated dipole field.

Journal Article↗

PubMed2005

Thorium encapsulated caged clusters of germanium: Th@Ge(n), n = 16, 18, and 20.

We report from ab initio calculations that thorium encapsulation can be used to stabilize highly symmetric cages of germanium with 16 and 20 atoms. The lowest energy structures of these clusters are different from the recently found silicon fullerenes and are similar to clusters found in bulk metallic alloys. The binding energies of these clusters are higher compared with the values for the elemental germanium clusters of comparable sizes, and this suggests a strong possibility of their experimental realization in large quantities. Also, Th@Ge(16) has a large highest occupied-lowest unoccupied molecular orbital (HOMO-LUMO) gap of 1.72 eV that makes it interesting for optoelectronic applications.

Letter↗

PubMed2005

Evolution of the electronic structure of Be clusters.

Using a modified symbiotic genetic algorithm approach and many-body interatomic potential derived from first principles, we have calculated equilibrium geometries and binding energies of the ground-state and low-lying isomers of Be clusters containing up to 41 atoms. Molecular-dynamics study was also carried out to study the frequency of occurrence of the various geometrical isomers as these clusters are annealed during the simulation process. For a selected group of these clusters, higher-energy isomers were more often found than their ground-state structures due to large catchment areas. The accuracy of the above ground-state geometries and their corresponding binding energies were verified by carrying out separate ab initio calculations based on molecular-orbital approach and density-functional theory with generalized gradient approximation for exchange and correlation. The atomic orbitals were represented by a Gaussian 6-311G** basis, and the geometry optimization was carried out using the GAUSSIAN 98 code without any symmetry constraint. While the ground-state geometries and their corresponding binding energies obtained from ab initio calculations do not differ much from those obtained using the molecular-dynamics approach, the relative stability of the clusters and the energy gap between the highest occupied and the lowest unoccupied molecular orbitals show significant differences. The energy gaps, calculated using the density-functional theory, show distinct shell closure effects, namely, sharp drops in their values for Be clusters containing 2, 8, 20, 34, and 40 electrons. While these features may suggest that small Be clusters behave free-electron-like and, hence, are metallic, the evolution of the structure, binding energies, coordination numbers, and nearest-neighbor distances do not show any sign of convergence towards the bulk value. We also conclude that molecular-dynamics simulation based on many-body interatomic potentials may not always give the correct picture of the evolution of the structure and energetics of clusters although they may serve as a useful tool for obtaining starting geometries by efficiently searching a large part of the phase space.

Journal Article↗

PubMed2005

Highly controlled acetylene accommodation in a metal-organic microporous material.

Metal-organic microporous materials (MOMs) have attracted wide scientific attention owing to their unusual structure and properties, as well as commercial interest due to their potential applications in storage, separation and heterogeneous catalysis. One of the advantages of MOMs compared to other microporous materials, such as activated carbons, is their ability to exhibit a variety of pore surface properties such as hydrophilicity and chirality, as a result of the controlled incorporation of organic functional groups into the pore walls. This capability means that the pore surfaces of MOMs could be designed to adsorb specific molecules; but few design strategies for the adsorption of small molecules have been established so far. Here we report high levels of selective sorption of acetylene molecules as compared to a very similar molecule, carbon dioxide, onto the functionalized surface of a MOM. The acetylene molecules are held at a periodic distance from one another by hydrogen bonding between two non-coordinated oxygen atoms in the nanoscale pore wall of the MOM and the two hydrogen atoms of the acetylene molecule. This permits the stable storage of acetylene at a density 200 times the safe compression limit of free acetylene at room temperature.

Journal Article↗

PubMed2005

Novel method for site-controlled surface nanodot fabrication by ion beam synthesis.

By using a Ga FIB system to spatially control the implantation of Ga into SiO(2) followed by vacuum annealing, we have fabricated self-assembled surface Ga nanodots with a high degree of control of nucleation location. The morphology of the Ga nanodots is closely related to Ga dose, showing a critical dose needed for nucleation that results in Ga nanodot formation just below the surface, while at higher doses Ga nanodots form on the surface as metallic Ga droplets. Possible applications include defining nucleation sites for subsequent growth, use as Ga source for GaN or GaAs quantum dots, or as catalyst for nanowire growth.

Journal Article↗

PubMed2005

Pristine semiconducting [110] silicon nanowires.

We report results of ab initio calculations on silicon nanowires oriented along the [110] direction and show for the first time that these pristine silicon nanowires are indirect band gap semiconductors. The nanowires have bulk Si core and are bounded by two (100) and two (110) planes in lateral directions. The (100) planes are atomically reconstructed with dimerization in a manner similar to the (100) surface of bulk Si but the dimer arrays are perpendicular to each other on the two (100) planes. An interesting consequence of surface reconstruction is the possibility of polytypism in thicker nanowires. We discuss its effects on the electronic structure. These findings could have important implications for the use of silicon nanowires in nanoscale devices as experimentally [110] nanowires have been found to grow preferentially in the small diameter range.

Journal Article↗

PubMed2004

Origin of spontaneous electric dipoles in homonuclear niobium clusters.

Surprisingly large, spontaneous electric dipole moments recently observed in homonuclear niobium clusters below 100 K are explained using first-principles electronic structure calculations. The calculated moments for Nb(n) (n < or =15) generally agree with the experimental data. A strong correlation is found between the geometrical asymmetry of the cluster and electric dipole: its magnitude is proportional to the spread in the principal moments of inertia and its direction aligns with the axis of the largest principal moment. Charge deformation densities reveal directional, partially covalent bonds that stabilize structural asymmetry. Classical simulations of the deflection of a cluster in a molecular beam reveal that the electronic dipole may persist at higher temperatures, but is masked by the rotational dynamics of the cluster.

Journal Article↗

PubMed2004

Interpretation of Hund's multiplicity rule for the carbon atom.

Hund's multiplicity rule is investigated for the carbon atom using quantum Monte Carlo methods. Our calculations give an accurate account of electronic correlation and obey the virial theorem to high accuracy. This allows us to obtain accurate values for each of the energy terms and therefore to give a convincing explanation of the mechanism by which Hund's rule operates in carbon. We find that the energy gain in the triplet with respect to the singlet state is due to the greater electron-nucleus attraction in the higher spin state, in accordance with Hartree-Fock calculations and studies including correlation. The method used here can easily be extended to heavier atoms.

Journal Article↗

PubMed2004

Thermodynamic properties of the Cu-Au system using a face-centered-cubic lattice model with a renormalized potential.

A Monte Carlo simulation is carried out to study thermodynamic properties of Cu-Au alloys using a face-centered-cubic (fcc) lattice-gas model. To obtain quantitatively accurate results, a Finnis-Sinclair-type potential, which has been widely used for molecular dynamics (MD) simulations, is employed. To overcome some shortcomings of lattice-gas models such as neglecting vibrational entropy, the potential is mapped onto the fcc lattice using the renormalization technique. The renormalized potential gives an improved Cu-Au phase diagram compared to the original MD potential applied directly on the lattice.

Journal Article↗

PubMed2004

First-principles study of the electronic structures of icosahedral TiN (N=13,19,43,55) clusters.

We have studied the electronic structures of icosahedral Ti(N) clusters (N=13, 19, 43, and 55) by using a real-space first-principles cluster method with generalized gradient approximation for exchange-correlation potential. The hexagonal close-packed and fcc close-packed clusters have been studied additionally for comparisons. It is found that the icosahedral structures are the most stable ones except for Ti(43), where fcc close-packed structure is favorable in energy. We present and discuss the variation of bond length, the features of the highest occupied molecular orbitals and the lowest unoccupied molecular orbital, the evolution of density of states, and the magnetic moment in detail. The results are in good agreement with the predictions from the collision-induced dissociation and size-selected anion photoelectron spectroscopy experiments.

Journal Article↗

PubMed2004

Ultra-stable nanoparticles of CdSe revealed from mass spectrometry.

Nanoparticles under a few nanometres in size have structures and material functions that differ from the bulk because of their distinct geometrical shapes and strong quantum confinement. These qualities could lead to unique device applications. Our mass spectral analysis of CdSe nanoparticles reveals that (CdSe)(33) and (CdSe)(34) are extremely stable: with a simple solution method, they grow in preference to any other chemical compositions to produce macroscopic quantities. First-principles calculations predict that these are puckered (CdSe)(28)-cages, with four- and six-membered rings based on the highly symmetric octahedral analogues of fullerenes, accommodating either (CdSe)(5) or (CdSe)(6) inside to form a three-dimensional network with essentially heteropolar sp(3)-bonding. This is in accordance with our X-ray and optical analyses. We have found similar mass spectra and atomic structures in CdS, CdTe, ZnS and ZnSe, demonstrating that mass-specified and macroscopically produced nanoparticles, which have been practically limited so far to elemental carbon, can now be extended to a vast variety of compound systems.

Cadmium Compounds↗

PubMed2003

Magnetism in transition-metal-doped silicon nanotubes.

Using first-principles density functional calculations, we show that hexagonal metallic silicon nanotubes can be stabilized by doping with 3d transition metal atoms. Finite nanotubes doped with Fe and Mn have high local magnetic moments, whereas Co-doped nanotubes have low values and Ni-doped nanotubes are mostly nonmagnetic. The infinite Si24Fe4 nanotube is found to be ferromagnetic with nearly the same local magnetic moment on each Fe atom as in bulk iron. Mn-doped nanotubes are antiferromagnetic, but a ferrromagnetic state lies only 0.03 eV higher in energy with a gap in the majority spin bands near the Fermi energy. These materials are interesting for silicon-based spintronic devices and other nanoscale magnetic applications.

Journal Article↗

PubMed2003

Hemocytes of Ciona intestinalis express multiple genes involved in innate immune host defense.

Ascidians, which are classified as urochordata, appear to employ a primitive system of host defense that is considered to be a prototype of vertebrate innate immunity. We performed a cDNA/EST study to identify the genes expressed in the hemocytes of Ciona intestinalis. We obtained 3357 one-path reads that were then grouped into 1889 independent clusters. Although two thirds of the clusters could not be assigned to any particular gene, the remaining 530 clusters had significant homology to genes with known function. Of these, 62 clusters appeared to be related to host defense mechanisms. These include transcripts whose products are probably involved in cytotoxicity, detoxification, inflammation, and apoptosis. As expected, elements of acquired immunity were not detected. Thus, Ciona hemocytes appear to express a number of host defense-related genes involved in innate immune mechanisms.

Animals↗

PubMed2003

Hydrogenated silicon fullerenes: effects of H on the stability of metal-encapsulated silicon clusters.

Ab initio calculations of H interaction on Si12M, Si18M2 (M=Cr, Mo, and W), and Zr@Si(16) fullerene (f) show relatively weak binding of H in agreement with experimental results of H free Si12M and Si18M2 clusters. Adsorption of H enhances sp(3) bonding between the Si atoms, weakens the M-Si cage interactions, and leads to distortions in the cages. Si12CrH12 has 4 mu(B) magnetic moment in contrast to zero for Si12Cr. Removal of the M atom leads to stable empty cages of Si12H12, f-Si16H16, and f-Si20H20 with large highest occupied-lowest unoccupied molecular orbital gaps of 2.5-3.0 eV, making them attractive for optoelectronic applications.

Journal Article↗