Biomedical subjects

Zhiyong Yang

Publications and source records attributed to Zhiyong Yang.

6 recordsLinked to original sources

PubMed2003

A statistical explanation of visual space.

The subjective visual space perceived by humans does not reflect a simple transformation of objective physical space; rather, perceived space has an idiosyncratic relationship with the real world. To date, there is no consensus about either the genesis of perceived visual space or the implications of its peculiar characteristics for visually guided behavior. Here we used laser range scanning to measure the actual distances from the image plane of all unoccluded points in a series of natural scenes. We then asked whether the differences between real and apparent distances could be explained by the statistical relationship of scene geometry and the observer. We were able to predict perceived distances in a variety of circumstances from the probability distribution of physical distances. This finding lends support to the idea that the characteristics of human visual space are determined probabilistically.

Humans↗

PubMed2003

A population threshold for functional polymorphisms.

We sequenced 114 genes (for DNA repair, cell cycle arrest, apoptosis, and detoxification)in a mixed human population and observed a sudden increase in the number of functional polymorphisms below a minor allele frequency of approximately 6%. Functionality is assessed by considering the ratio in the number of nonsynonymous single nucletide polymorphisms (SNPs)to the number of synonymous or intron SNPs. This ratio is steady from below 1% in frequency-that regime traditionally associated with rare Mendelian diseases-all the way up to about 6% in frequency, after which it falls precipitously. We consider possible explanations for this threshold effect. There are four candidates as follows: (1). deleterious variants that have yet to be purified from the population, (2). balancing selection, in which a selective advantage accrues to the heterozygotes, (3). population-specific functional polymorphisms, and (4). adaptive variants that are accumulating in the population as a response to the dramatic environmental changes of the last 7000 approximately 17000 years.

Animals↗

PubMed2003

Image/source statistics of surfaces in natural scenes.

Perceiving surfaces in a manner that accords with their physical properties is essential for successful behaviour. Since, however, a given retinal image can have been generated by an infinite variety of natural surfaces with different geometrical and/or physical qualities, the corresponding percepts cannot be determined by the stimulus per se. Rather, resolution of this quandary requires a strategy of vision that incorporates the statistical relationship of the information in retinal images to its sources in representative environments. To examine this probabilistic relationship with respect to the features of object surfaces, we analysed a database of range images in which the distances of all the objects in a series of natural scenes were measured with respect to the image plane by a laser range scanner. By taking any particular scene obtained in this way to be made up of a set of concatenated surface patches, we were able to explore the statistics of scene roughness, size-distance relationships, surface orientation and local curvature, as well as the independent components of natural surfaces. The relevance of these statistics to both perception and the neuronal organization of the underlying visual circuitry is discussed.

Nature↗

PubMed2002

Dual regulatory role of human cytomegalovirus immediate-early protein in IL1B transcription is dependent upon Spi-1/PU.1.

Activation of IL1B gene transcription has been shown to play a crucial role in human cytomegalovirus (HCMV) infection. We previously reported that HCMV immediate-early (IE) proteins vigorously transactivate IL1B expression without the need for a normally essential upstream enhancer. This activation appears to depend upon protein-protein tethering between IE2, which provides a transcription activation domain (TAD), and the DNA-binding domain of the transcription factor Spi-1. We now show a distinct mechanism by which IE1 and IE2 mediate both weak Spi-1-independent and vigorous Spi-1-dependent IL1B transcription from the -59 to +12 IL1B core promoter. These results demonstrate that in contrast to non-viral, enhancer-mediated, transactivation of IL1B, the IE mechanism is not absolutely dependent upon Spi-1. However, Spi-1 is required for vigorous transcription. Additionally, we have discovered that IE1, which cooperates with IE2 to transactivate IL1B, has minimal activity in the absence of IE2 and Spi-1. Furthermore, IE1 is a dual-acting factor, which can either activate or repress IL1B, depending on the presence of both IE2 and the Spi-1 TADs. Therefore, the relative expression of IE1 and IE2, which varies during HCMV infection, may provide a molecular mechanism by which IL1B can be repressed, thus, avoiding clearance by the host.

Cytomegalovirus↗

PubMed2002

Perception of objects that are translating and rotating.

The motion of objects that are both translating and rotating can be decomposed into an infinite number of translational and rotational combinations. How, then, do such stimuli routinely elicit specific percepts and behavioral responses that are usually appropriate? A possible answer is that motion percepts are fully determined by the probability distributions of all the possible correspondences and differences in the stimulus sequence. To test the merits of this conceptual framework, we investigated the perceived motion elicited by a line that is both translating and rotating behind an aperture. When stimuli are presented such that a particular sequence of appearance and disappearance occurs at the aperture boundary, subjects report that the line is rotating only; furthermore, the perceived centers of rotation appear to describe a cycloidal trajectory, even when one aperture shape is replaced by another. These and other perceptual effects elicited by translating and rotating stimuli are all accurately predicted by the probability distribution of the possible sources of the physical movements, supporting the conclusion that motion perception is indeed generated by a wholly probabilistic strategy.

Discrimination Learning↗

PubMed2002

Minimal introns are not "junk".

Intron-size distributions for most multicellular (and some unicellular) eukaryotes have a sharp peak at their "minimal intron" size. Across the human population, these minimal introns exhibit an abundance of insertion-deletion polymorphisms, the effect of which is to maintain their optimal size. We argue that minimal introns affect function by enhancing the rate at which mRNA is exported from the cell nucleus.

Active Transport, Cell Nucleus↗