Biomedical subjects

Zili Liu

Publications and source records attributed to Zili Liu.

12 recordsLinked to original sources

PubMed2025

Genome-wide identification and analysis of paclobutrazol-resistance gene family in cotton and the positive role of GhPRE3 in salt stress and drought stress resistance.

Compared with other transcription factors, much less studies have been performed on paclobutrazol-resistance (PRE), a subgroup of the extensive bHLH transcription factor gene family, and the research in cotton was also limited. By utilizing the PRE genes and their conserved domains identified in Arabidopsis, a total of 23, 22, 11, and 12 PRE genes were identified from two major cultivated cotton species and their two ancestors, respectively. The cotton PRE gene family was categorized into three subgroups based on evolutionary tree analysis. Motif and intron analyses indicated that the PRE gene has remained highly conserved throughout evolution. Collinearity analysis indicated that gene duplication, particularly through fragment replication, has significantly contributed to the expansion of the cotton PRE family. An exploration of the conserved elements within the PRE gene family uncovered numerous elements associated with plant stress resistance. Additionally, cotton transcriptome and qRT-PCR analysis showed that PRE genes were associated with a variety of abiotic stresses, including salt, drought, and cold treatments. Subcellular localization experiments indicated that the GhPRE3 gene is associated with membrane proteins. Finally, we selected the GhPRE3 gene for a VIGS experiment, which revealed that under salt stress and drought stress conditions, the wilting of leaves in the GhPRE3-silenced plants was significantly more severe than that observed in the control group, with T-AOC levels notably lower and MDA levels significantly higher. Overexpression of GhPRE3 enhanced seed germination and root development in transgenic Arabidopsis thaliana under salt stress and drought stresses. This suggests that GhPRE3 plays a positive regulatory role in cotton tolerance to salt and drought stressed, providing a reference for molecular genetic breeding of cotton with salt and drought tolerance.

Gossypium↗

PubMed2006

Computing dynamic classification images from correlation maps.

We used Pearson's correlation to compute dynamic classification images of biological motion in a point-light display. Observers discriminated whether a human figure that was embedded in dynamic white Gaussian noise was walking forward or backward. Their responses were correlated with the Gaussian noise fields frame by frame, across trials. The resultant correlation map gave rise to a sequence of dynamic classification images that were clearer than either the standard method of A. J. Ahumada and J. Lovell (1971) or the optimal weighting method of R. F. Murray, P. J. Bennett, and A. B. Sekuler (2002). Further, the correlation coefficients of all the point lights were similar to each other when overlapping pixels between forward and backward walkers were excluded. This pattern is consistent with the hypothesis that the point-light walker is represented in a global manner, as opposed to a fixed subset of point lights being more important than others. We conjecture that the superior performance of the correlation map may reflect inherent nonlinearities in processing biological motion, which are incompatible with the assumptions underlying the previous methods.

Artifacts↗

PubMed2006

The perceived motion of a stereokinetic stimulus.

An ellipse rotating in the image plane can produce several different percepts. The two-dimensional (2D) percepts are either a rotating rigid ellipse or a constantly deforming non-rigid ellipse. The 3D percept is a rotating rigid circular disk that is tilted relative to the image plane. Stimuli that generate 3D percepts based on purely 2D rotational motion are known as stereokinetic stimuli. We examined the 3D percepts generated by the rotating ellipse stimulus. In theory, the motion of the 3D percept cannot be reliably inferred based on the 2D stimulus. When we quantitatively estimated observers' perceived motion, however, we found that the perceived motion was nearly identical across observers. These results suggest that all observers had similar 3D percepts. We assumed that given the 2D rotating ellipse stimulus the visual system generates a rigid 3D percept that is as slow and smooth as possible. The percepts predicted by these assumptions closely matched the experimental data. These findings suggest that perceptual ambiguity in stereokinetic stimuli is resolved using slow and smooth motion assumptions.

Depth Perception↗

PubMed2006

Learning motion discrimination with suppressed and un-suppressed MT.

Perceptual learning of motion direction discrimination is generally thought to rely on the middle temporal area of the brain (MT/V5). A recent study investigating learning of motion discrimination when MT was psychophysically suppressed found that learning was possible with suppressed MT, but only when the task was sufficiently easy [Lu, H., Qian, N., Liu, Z. (2004). Learning motion discrimination with suppressed MT. Vision Research 44, 1817-1825]. We investigated whether this effect was indeed due to MT suppression or whether it could be explained by task difficulty alone. By comparing learning of motion discrimination when MT was suppressed vs. un-suppressed, at different task difficulties, we found that task difficulty alone could not explain the effects. At the highest difficulty, learning was not possible with suppressed MT, confirming [Lu, H., Qian, N., Liu, Z. (2004). Learning motion discrimination with suppressed MT. Vision Research 44, 1817-1825]. In comparison, learning was possible with un-suppressed MT at the same difficulty level. At the intermediate task difficulty, there was a clear learning disadvantage when MT was suppressed. Only for the easiest level of difficulty, did learning become equally possible for both suppressed and un-suppressed conditions. These findings suggest that MT plays an important role in learning to discriminate relatively fine differences in motion direction.

Discrimination, Psychological↗

PubMed2006

Amodal completion impairs stereoacuity discrimination.

Visual stimulus configuration can influence elementary visual processes. We provide empirical evidence to demonstrate this effect in stereoscopic depth discrimination. Two vertically aligned bars were presented in stereo such that one of them was closer to the human observer. Observers discriminated which of the two was closest. In the first, "occluded" condition, a horizontal bar, positioned closest in depth to the observer, was added to the display such that the two vertical bars perceptually completed to form a whole by connecting together behind the horizontal bar. In the second, control condition, the horizontal bar was placed furthest away from the observer such that there was a visible gap between the two vertical bars, which could no longer complete perceptually. We measured observers' psychometric functions using the method of constant stimuli, and found that their discrimination sensitivity d' was smaller when the two vertical bars perceptually completed than when they did not. We used a simple model to illustrate that when the two vertical bars perceptually completed, they also tended to be perceived as coplanar in the fronto-parallel plane. This consequence of completion made it more difficult to discriminate any difference in depth between the two vertical bars.

Analysis of Variance↗

PubMed2006

Shape recognition alters sensitivity in stereoscopic depth discrimination.

A fundamental question in visual perception is to characterize how information from sensory input is integrated with prior probabilities. The role of prior probabilities is controversial for elementary visual processes, which are often believed to be immune from higher-level influences. In this paper, we demonstrate such influences. We tested human observers' abilities to discriminate stereoscopic depth defined by points embedded in a biological pattern--a human figure. Our results indicate that the internal representation of a walking human figure imposed constraints on depth discrimination of a static stimulus. This constraint was manifested when the stimulus was recognized as a human figure. When the expected human figure configuration (forearms having equal length) was inconsistent with the sensory input information, discrimination of forearm lengths was impaired. In contrast, when there was no inconsistency (the hand-hip distance on the left was not expected to be equal to that on the right), discrimination between the two distances was improved, presumably because the human figure configuration provided a more accurate frame of reference for stereoscopic depth. Both the impairment and improvement were due to changes of discrimination sensitivity rather than decision bias. Our findings support the view that visual perception is an inference process constrained by Bayesian prior probabilities.

Bayes Theorem↗

PubMed2006

The glare effect does not give rise to a longer-lasting afterimage.

The glare effect is an illusion in which a region appears self-luminous when flanked by gradients that decrease in luminance with distance from the region (Zavagno, 1999 Perception 28 835-838). This region also appears brighter than a surface of the same luminance. We investigated, using the paradigm of afterimages, whether a low-level mechanism at the level of the retina or LGN could account for this apparent brighter sensation. We first replicated the result from the literature that brighter and longer-lasting physical stimuli generate longer-lasting afterimages. We then compared the glare-effect stimuli with their counterpart controls, and found that the glare-effect stimuli did not give rise to longer-lasting afterimages. This suggests that the apparent brighter sensation of the glare effect is not due to a retinal or LGN mechanism, but must have a cortical origin.

Afterimage↗

PubMed2005

Symmetry impedes symmetry discrimination.

Objects in the world, natural and artificial alike, are often bilaterally symmetric. The visual system is likely to take advantage of this regularity to encode shapes for efficient object recognition. The nature of encoding a symmetric shape, and of encoding any departure from it, is therefore an important matter in visual perception. We addressed this issue of shape encoding empirically, noting that a particular encoding scheme necessarily leads to a specific profile of sensitivity in perceptual discriminations. We studied symmetry discrimination using human faces and random dots. Each face stimulus was a frontal view of a three-dimensional (3-D) face model. The 3-D face model was a linearly weighted average (a morph) between the model of an original face and that of the corresponding mirror face. Using this morphing technique to vary the degree of asymmetry, we found that, for faces and analogously generated random-dot patterns alike, symmetry discrimination was worst when the stimuli were nearly symmetric, in apparent opposition to almost all studies in the literature. We analyzed the previous work and reconciled the old and new results using a generic model with a simple nonlinearity. By defining asymmetry as the minimal difference between the left and right halves of an object, we found that the visual system was disproportionately more sensitive to larger departures from symmetry than to smaller ones. We further demonstrated that our empirical and modeling results were consistent with Weber-Fechner's and Stevens's laws.

Adult↗

PubMed2004

Learning motion discrimination with suppressed MT.

We studied perceptual learning in motion discrimination when the brain's middle temporal area (MT/V5) was functionally suppressed. This was achieved by using the "paired-dots" motion stimulus where the two dots in a pair always move in counter-phase over a short distance [J. Neurosci. 14 (1994) 7357]. The motion directional signal of the stimulus is therefore always 0 on average. As a result, this stimulus activates MT in Rhesus monkeys no more than flicker noise does [J. Neurosci. 14 (1994) 7367]. We added a new manipulation to eliminate the Glass pattern in the original stimulus that would have otherwise provided a static orientation cue. Two such new motion stimuli were presented sequentially, in a 2AFC task. Subjects decided if the global motion-axis of the stimuli changed clockwise or counter-clockwise. When the task difficulty was set at 60% correct, none of the subjects could learn with feedback, even though their performance was well above chance. However, when the task difficulty was set instead at 70% correct, a new group of subjects was able to learn. Hence, learning motion discrimination was possible when MT was presumably eliminated.

Discrimination Learning↗

PubMed2004

[Extraction of ferulic acid from enzymatic hydrolysate by ion-exchange adsorption].

Anion-exchange resin, D201 was used to prepare ferulic acid from the enzymatic hydrolysate of wheat-bran and the influence of adsorption and desorption operation was researched. The optimal technology is as follows: under the room-temperature, the concentration of ferulic acid in the extraction solution is 2000 mg/L to approximately 3000 mg/L, pH and flow velocity were kept around 9.0 and 1 ml/min respectively; elution solution is composed of ethanol: water: HCl in ratio 60:36:4 (v/v), and the velocity of elution is 1 ml/min. Under optimal conditions,the recovery percent of ferulic acid from enzymatic hydrolysate exceed 97% and the purification production is in evidence.

Adsorption↗

PubMed2003

On the principle of minimal relative motion--the bar, the circle with a dot, and the ellipse.

Beghi, Xausa, & Zanforlin (1991a) and Beghi, Xausa, De Biasio, & Zanforlin (1991b) have presented visual stereokinetic phenomena. When a bar is rotated in the image plane, it appears to be slanted in depth. Likewise, when a circle with an off-centered dot is rotated, a three-dimensional (3-D) cone is perceived. Finally, when an ellipse is rotated in the image plane, an ellipsoid is perceived that is tilted in depth. To explain these phenomena, Beghi et al. (1991a,b) offer an analytic model that assumes that the visual system nullifies the speed differences between all stimulus points. I critique this analytic model, and show that it cannot explain the perceptual phenomena.

Depth Perception↗

PubMed2003

Three-dimensional symmetric shapes are discriminated more efficiently than asymmetric ones.

Objects with bilateral symmetry, such as faces, animal shapes, and many man-made objects, play an important role in everyday vision. Because they occur frequently, it is reasonable to conjecture that the brain may be specialized for symmetric objects. We investigated whether the human visual system processes three-dimensional (3D) symmetric objects more efficiently than asymmetric ones. Human subjects, having learned a symmetric wire object, discriminated which of two distorted copies of the learned object was more similar to the learned one. The distortion was achieved by adding 3D Gaussian positional perturbations at the vertices of the wire object. In the asymmetric condition, the perturbation was independent from one vertex to the next. In the symmetric condition, independent perturbations were added to only half of the object; perturbations on the other half retained the symmetry of the object. We found that subjects' thresholds were higher in the symmetric condition. However, since the perturbation in the symmetric condition was correlated, a stimulus image provided less information in the symmetric condition. Taking this in to consideration, an ideal-observer analysis revealed that subjects were actually more efficient at discriminating symmetric objects. This reversal in interpretation underscores the importance of ideal-observer analysis. A completely opposite, and wrong, conclusion would have been drawn from analyzing only human discrimination thresholds. Given the same amount of information, the visual system is actually better able to discriminate symmetric objects than asymmetric ones.

Differential Threshold↗