Biomedical subjects

Zilvinas Rinkevicius

Publications and source records attributed to Zilvinas Rinkevicius.

6 recordsLinked to original sources

PubMed2006

Time-dependent density functional theory with the generalized restricted-unrestricted approach.

This work presents the derivation, implementation, and first applications of the generalized restricted-unrestricted method based on the density functional Kohn-Sham formalism. By using a spin-restricted Kohn-Sham representation for the reference state the well-known spin contamination problem is avoided, while the unrestricted representation of the perturbation response retains a proper description of spin polarization. The formulation is a generalization of our previous implementation of the restricted-unrestricted method [Z. Rinkevicius et al., J. Chem. Phys. 121, 7614 (2004)], as it accounts for the full unrestricted response instead of describing the spin polarization in terms of triplet operators only. The purpose of this paper is to investigate the role of the generalization employed and demonstrate its numerical performance. For this purpose we focus on isotropic hyperfine coupling constants of a set of organic radicals and transition metal compounds. For both classes of molecules we observe that the effect of neglecting singlet excitation operators in the response part of restricted-unrestricted formalism changes the calculated hyperfine coupling parameters by a few MHz. The obtained results confirm the validity of the approximation used in the simplified restricted-unrestricted approach, i.e. spin polarization can, in most cases, be adequately described by an account of only triplet operators in the response term.

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PubMed2005

Density functional theory study of indirect nuclear spin-spin coupling constants with spin-orbit corrections.

This work outlines the calculation of indirect nuclear spin-spin coupling constants with spin-orbit corrections using density functional response theory. The nonrelativistic indirect nuclear spin-spin couplings are evaluated using the linear response method, whereas the relativistic spin-orbit corrections are computed using quadratic response theory. The formalism is applied to the homologous systems H2X (X=O,S,Se,Te) and XH4 (X=C,Si,Ge,Sn,Pb) to calculate the indirect nuclear spin-spin coupling constants between the protons. The results confirm that spin-orbit corrections are important for compounds of the H2X series, for which the electronic structure allows for an efficient coupling between the nuclei mediated by the spin-orbit interaction, whereas in the case of the XH4 series the opposite situation is encountered and the spin-orbit corrections are negligible for all compounds of this series. In addition we analyze the performance of the density functional theory in the calculations of nonrelativistic indirect nuclear spin-spin coupling constants.

Journal Article↗

PubMed2005

Two-photon absorption in solution by means of time-dependent density-functional theory and the polarizable continuum model.

We present the first study of two-photon absorption (TPA) of solvated molecules based on direct evaluation of TPA cross sections from the quadratic response of time-dependent perturbations. A set of prototypical two-photon (TP) chromophores has been selected and analyzed: a pure pi system (t-stilbene) and its substituted homologs obtained employing a donor (D) and an acceptor (A) group to probe the solvent effects along the series pi, D-pi-D, A-pi-D, and A-pi-A. For the selected systems we have calculated the TPA cross sections in different environments by means of the polarizable continuum model. The data have been analyzed to evaluate how the structural and environmental parameters contribute to the final two-photon absorption cross section. These include molecular structure, geometry relaxation in solution, polarity, and refractive index of the solvent. The performances of the three common functionals SVWN, BLYP, and B3LYP have been compared. The results show a significant solvent dependence of the TPA cross section and an unusual trend when passing from cyclohexane to water. The data have also been rationalized in terms of the main orbital excitations leading to the transitions. Finally, trends along the series have been described and comparison with experiments and previous calculations has been drawn.

Absorption↗

PubMed2005

Time-dependent density-functional theory calculations of triplet-triplet absorption.

We present density-functional theory calculations of triplet-triplet absorption by three different approaches based on time-dependent density-functional theory (DFT): unrestricted DFT linear response, open-shell restricted DFT linear response applied to the triplet state, and quadratic response with triplet excitations applied to the ground state. Comparison is also made with corresponding results obtained by Hartree-Fock and multiconfiguration self-consistent-field response theory. Two main conclusions concerning triplet-triplet transitions are drawn in this study: First, the very good agreement between unrestricted and restricted DFT results indicates that spin contamination of the triplet state is not a serious problem when computing triplet-triplet spectra of common organic molecules. Second, DFT response calculations of triplet-triplet transitions can be affected by triplet instability problems, especially for the combination of DFT quadratic response with functionals containing fractional exact Hartree-Fock exchange.

Journal Article↗

PubMed2004

Density functional theory for hyperfine coupling constants with the restricted-unrestricted approach.

This work presents derivation, implementation, and the first applications of the restricted-unrestricted approach based on restricted Kohn-Sham formalism for evaluation of hyperfine coupling constants. By using the spin-restricted Kohn-Sham method the well-known spin contamination problem existing in the unrestricted Kohn-Sham formalism is avoided and a proper description of spin polarization is achieved via the restricted-unrestricted approach without introducing spin contamination into the evaluation of the hyperfine coupling constants. The performance of the proposed formalism is evaluated for a set of organic radicals and transition metal compounds. The results of this investigation indicate promising accuracy of the restricted-unrestricted approach for calculation of the isotropic hyperfine coupling constants in organic radicals as well as transition metal compounds.

Journal Article↗

PubMed2004

Electronic g-tensors of solvated molecules using the polarizable continuum model.

We present the implementation of density functional response theory combined with the polarizable continuum model (PCM), enabling first principles calculations of molecular g-tensors of solvated molecules. The calculated g-tensor shifts are compared with experimental g-tensor shifts obtained from electron paramagnetic resonance spectra for a few solvated species. The results indicate qualitative agreement between the calculations and the experimental data for aprotic solvents, whereas PCM fails to reproduce the electronic g-tensor behavior for protic solvents. This failure of PCM for protic solvents can be resolved by including into the model those solvent molecules which are involved in hydrogen bonding with the solute. The results for the protic solvents show that the explicit inclusion of the solvent molecules of the first solvation sphere is not sufficient in order to reproduce the behavior of the electronic g-tensor in protic solvents, and that better agreement with experimental data can be obtained by including the long-range electrostatic effects accounted for by the PCM approach on top of the explicit hydrogen-bonded complexes.

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