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PubMed · 10328266

Assigning secondary structure from protein coordinate data.

S M King·W C Johnson
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Abstract

We have developed a program to convert the three dimensional coordinates describing protein structure in the Brookhaven Data Bank into an assignment of secondary structure. The program assigns secondary structure in the same way a person assigns structure visually. It uses two angles and three distances to assign alpha-helix, 3(10)-helix, beta-strand, hydrogen-bonded beta-turn, non-hydrogen-bonded beta-turn, and poly (L-proline) II type 3(1)-helix. The program is concerned with amide-amide interactions and should be particularly useful to spectroscopists.

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Amino Acid SequenceAnimalsDatabases, FactualHumansHydrogen BondingMolecular Sequence DataProtein Structure, SecondaryJournal ArticleResearch Support, U.S. Gov't, P.H.S.

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S M King, W C Johnson. 1999-05-15. Assigning secondary structure from protein coordinate data.. https://pubmed.ncbi.nlm.nih.gov/10328266/

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