bioWidgets: data interaction components for genomics.

S Fischer; J Crabtree; B Brunk; M Gibson; G C Overton

doi:10.1093/bioinformatics/15.10.837

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PubMed · 10705436

bioWidgets: data interaction components for genomics.

S Fischer·J Crabtree·B Brunk·M Gibson·G C Overton

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Abstract

MOTIVATION: The presentation of genomics data in a perspicuous visual format is critical for its rapid interpretation and validation. Relatively few public database developers have the resources to implement sophisticated front-end user interfaces themselves. Accordingly, these developers would benefit from a reusable toolkit of user interface and data visualization components. RESULTS: We have designed the bioWidget toolkit as a set of JavaBean components. It includes a wide array of user interface components and defines an architecture for assembling applications. The toolkit is founded on established software engineering design patterns and principles, including componentry, Model-View-Controller, factored models and schema neutrality. As a proof of concept, we have used the bioWidget toolkit to create three extendible applications: AnnotView, BlastView and AlignView.

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Amino Acid Sequence Base Sequence Computational Biology Computer Graphics Computer Simulation DNA Databases, Factual Genome Molecular Sequence Data Proteins Sequence Alignment User-Computer Interface Journal Article Research Support, U.S. Gov't, Non-P.H.S.Research Support, U.S. Gov't, P.H.S.

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S Fischer, J Crabtree, B Brunk, M Gibson, G C Overton. 1999. bioWidgets: data interaction components for genomics.. https://doi.org/10.1093/bioinformatics%2F15.10.837

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