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PubMed · 11014592

DipoCoup: A versatile program for 3D-structure homology comparison based on residual dipolar couplings and pseudocontact shifts.

J Meiler·W Peti·C Griesinger
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Abstract

A program, DipoCoup, is presented that allows to search the protein data bank for proteins which have a three dimensional fold that is at least partially homologous to a protein under investigation. The three dimensional homology search uses secondary structure alignment based on chemical shifts and dipolar couplings or pseudocontact shifts for the three dimensional orientation of secondary structure elements. Moreover, the program offers additional tools for handling and analyzing dipolar couplings.

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Amino Acid SequenceCyclophilin ADatabases, FactualInsect ProteinsMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein FoldingProtein Structure, SecondaryProteinsSoftwareComparative StudyJournal ArticleResearch Support, Non-U.S. Gov't

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J Meiler, W Peti, C Griesinger. 2000. DipoCoup: A versatile program for 3D-structure homology comparison based on residual dipolar couplings and pseudocontact shifts.. https://doi.org/10.1023/a%3A1008362931964

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