TRES: comparative promoter sequence analysis.

M V Katti; M K Sakharkar; P K Ranjekar; V S Gupta

doi:10.1093/bioinformatics/16.8.739

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TRES: comparative promoter sequence analysis.

M V Katti·M K Sakharkar·P K Ranjekar·V S Gupta

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Abstract

Comparative promoter analysis is a promising strategy for elucidation of common regulatory modules conserved in evolutionarily related sequences or in genes showing common expression profiles. To facilitate such analysis, we have developed a software tool that detects conserved transcription factor binding sites, cis-elements, palindromes and k-tuples simultaneously in a set of sequences, and thus helps to identify putative motifs for designing further experiments.

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Animals Binding Sites Humans Promoter Regions, Genetic Sequence Analysis, DNA Software Transcription Factors Journal Article Research Support, Non-U.S. Gov't

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M V Katti, M K Sakharkar, P K Ranjekar, V S Gupta. 2000. TRES: comparative promoter sequence analysis.. https://doi.org/10.1093/bioinformatics%2F16.8.739

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