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PubMed · 11524378

Multi-query sequence BLAST output examination with MuSeqBox.

L Xing·V Brendel
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Abstract

SUMMARY: MuSeqBox is a program to parse BLAST output and store attributes of BLAST hits in tabular form. The user can apply a number of selection criteria to filter out hits with particular attributes. MuSeqBox provides a powerful annotation tool for large sets of query sequences that are simultaneously compared against a database with any of the standard stand-alone or network-client BLAST programs. We discuss such application to the problem of annotation and analysis of EST collections. AVAILABILITY: The program was written in standard C++ and is freely available to noncommercial users by request from the authors. The program is also available over the web at http://bioinformatics.iastate.edu/bioinformatics2go/mb/MuSeqBox.html.

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Alternative SplicingComputational BiologyDatabases, GeneticExpressed Sequence TagsOpen Reading FramesSequence AnalysisSoftwareZea maysJournal ArticleResearch Support, U.S. Gov't, Non-P.H.S.

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L Xing, V Brendel. 2001. Multi-query sequence BLAST output examination with MuSeqBox.. https://doi.org/10.1093/bioinformatics%2F17.8.744

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