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RNase cleavage-based methods for mutation/SNP detection, past and present.

M M Goldrick
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Abstract

Mutation detection based on ribonuclease cleavage of basepair mismatches in single-stranded RNA probes hybridized to DNA targets was first described over 15 years ago. The original methods relied on RNase A for mismatch cleavage; however, this enzyme fails to cleave many mismatches and has other drawbacks. More recently, a new method for RNase-cleavage-based mutation scanning has been developed, which takes advantage of the ability of RNase 1 and RNase T1 to cleave mismatches in duplex RNA targets, when these enzymes are used in conjunction with nucleic acid intercalating dyes. The method, called NIRCA, is relatively low-cost in terms of materials and equipment required. It is being used to detect mutations and SNPs in a wide variety of genes involved in human genetic disease and cancer, as well as in disease-related viral and bacterial genes. This review describes historical and recently developed RNase cleavage-based methods for mutation/SNP scanning.

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DNADNA Mutational AnalysisHumansMutationNucleic Acid HeteroduplexesPolymorphism, Single NucleotideRNARibonuclease T1Ribonuclease, PancreaticRibonucleasesJournal ArticleReview

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M M Goldrick. 2001. RNase cleavage-based methods for mutation/SNP detection, past and present.. https://doi.org/10.1002/humu.1175

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