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PubMed · 11754340

RNA solvation: a molecular dynamics simulation perspective.

P Auffinger·E Westhof
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Abstract

With the availability of accurate methods to treat the electrostatic long-range interactions, molecular dynamics simulations have resulted in refined dynamical models of the structure of the hydration shell around RNA motifs. The models reviewed here range from basic Watson-Crick to more specific noncanonical base pairs, from "simple" double helices to RNA molecules displaying more complex tertiary folds, and from DNA/RNA hybrid double helices to RNA hybrids formed with a chemically modified strand.

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Base PairingComputer SimulationHydrogen BondingIonsModels, MolecularRNASolventsStatic ElectricityThermodynamicsWaterJournal Article

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BibTeXRIS

P Auffinger, E Westhof. RNA solvation: a molecular dynamics simulation perspective.. https://doi.org/10.1002/1097-0282(2000)56%3A4%3C266%3A%3Aaid-bip10027%3E3.0.co%3B2-3

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